Sample 3300002533

Overview

Basic Information
IMG/M Taxon OID	3300002533 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0099541 \| Gp0056853 \| Ga0006234
Sample Name	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_80
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	32367701
Sequencing Scaffolds	9
Novel Protein Genes	10
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → environmental samples → uncultured marine thaumarchaeote AD1000_06_F06	1
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → intertidal zone → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Monterey Bay, California, USA
Coordinates	Lat. (^o)	36.25	Long. (^o)	-122.2099	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F011338	Metagenome / Metatranscriptome	292	N
F022427	Metagenome / Metatranscriptome	214	N
F029246	Metagenome / Metatranscriptome	189	Y
F070936	Metagenome / Metatranscriptome	122	Y
F072758	Metagenome	121	Y
F073088	Metagenome	120	N
F090256	Metagenome	108	N
F099328	Metagenome / Metatranscriptome	103	Y
F105359	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F011338

Metagenome / Metatranscriptome

292

F022427

Metagenome / Metatranscriptome

214

F029246

Metagenome / Metatranscriptome

189

F070936

Metagenome / Metatranscriptome

122

F072758

Metagenome

121

F073088

Metagenome

120

F090256

Metagenome

108

F099328

Metagenome / Metatranscriptome

103

F105359

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
JGI24925J35515_1001042	Not Available	2155	Open in IMG/M
JGI24925J35515_1001776	Not Available	1583	Open in IMG/M
JGI24925J35515_1001993	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1482	Open in IMG/M
JGI24925J35515_1002809	Not Available	1222	Open in IMG/M
JGI24925J35515_1005615	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → environmental samples → uncultured marine thaumarchaeote AD1000_06_F06	821	Open in IMG/M
JGI24925J35515_1006337	All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	771	Open in IMG/M
JGI24925J35515_1009990	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	601	Open in IMG/M
JGI24925J35515_1011227	Not Available	566	Open in IMG/M
JGI24925J35515_1011782	Not Available	552	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI24925J35515_1001042

Not Available

2155

Open in IMG/M

JGI24925J35515_1001776

Not Available

1583

Open in IMG/M

JGI24925J35515_1001993

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

1482

Open in IMG/M

JGI24925J35515_1002809

Not Available

1222

Open in IMG/M

JGI24925J35515_1005615

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → environmental samples → uncultured marine thaumarchaeote AD1000_06_F06

821

Open in IMG/M

JGI24925J35515_1006337

All Organisms → Viruses → environmental samples → uncultured Mediterranean phage

771

Open in IMG/M

JGI24925J35515_1009990

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

601

Open in IMG/M

JGI24925J35515_1011227

Not Available

566

Open in IMG/M

JGI24925J35515_1011782

Not Available

552

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI24925J35515_1001042	JGI24925J35515_10010424	F070936	MALDNIHSQLQEMRDRMELKEKWNEKMSIKGLGEFRKAYETLKKSGVDKRFVASMEKFYDDLVIGGMYSSRAAEDAGIVKIDGKTKYKNANW*
JGI24925J35515_1001776	JGI24925J35515_10017763	F072758	MEELYREFEQLAAKNEPLQCAGIMMAQALKIYKAALSEDEFKMITSKILESRDDINVERPTLN*
JGI24925J35515_1001993	JGI24925J35515_10019932	F090256	VQSNTSTVTIDTGEIGEQLVEEFFPKAERTDDWFDSTKDGTIREKTYEVKTFRLNNRDQGFWVDSSQFRKLDNVDILYFVKIPESLEEGATIYECMEHKNEDAYEAFKLGPIKQMRCYFLDNCKKITNIRDERTDALYHNSVSLSKHNRYV*
JGI24925J35515_1002722	JGI24925J35515_10027223	F099328	LVLTXLLVLRIIQAGTADACFVFFNNRIFLGEDLRAAIVCQARKALFK*
JGI24925J35515_1002809	JGI24925J35515_10028092	F029246	MGSNLGLIAFGLIALFATSMIKIAAIAALGWGVYKAYRDWGAM*
JGI24925J35515_1005615	JGI24925J35515_10056152	F073088	MQVNQQIHLIQIQFDQFVFLNNTYYLKPEFQSTQKNVIENELNIFIDFKEIGTIVGVKIIKYRKIEEIHKI*
JGI24925J35515_1006337	JGI24925J35515_10063372	F022427	SGHAVFNTDGTILGQTSSGLAGAGGTYDIDQTSTGTINLDVNGASANVSIEQTSSGTVHIDAAGSAFTADIDQDNASTLSLHHDGASADYVILQTGGSGDILTLTVNGASANVDIIQRD*
JGI24925J35515_1009990	JGI24925J35515_10099901	F105359	MNNIDKIAKLIATLDNDGLNKIIPIFKAHRKTLAHATKLDLRVGMKVSWGAMAHGTIDKINRTKCVCTRNDGQKWTVPITMMRVQ*
JGI24925J35515_1011227	JGI24925J35515_10112271	F011338	RVKNLSDRAFTTFSANNAITLEGGAGDGEIILENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSNVDGETMRLSDINGTKSSQNHRINFAFPTEVTKSA*
JGI24925J35515_1011782	JGI24925J35515_10117822	F070936	EMREAIELKEKWNEKMSIKGLGEFRKAYETLKKSGVDKRFVASMEKFYDDLVIGGMYSSRAAEDAGIVKIDGKTKYKNANW*

Scaffold ID

Protein ID

Family

Sequence

JGI24925J35515_1001042

JGI24925J35515_10010424

F070936

MALDNIHSQLQEMRDRMELKEKWNEKMSIKGLGEFRKAYETLKKSGVDKRFVASMEKFYDDLVIGGMYSSRAAEDAGIVKIDGKTKYKNANW*

JGI24925J35515_1001776

JGI24925J35515_10017763

F072758

MEELYREFEQLAAKNEPLQCAGIMMAQALKIYKAALSEDEFKMITSKILESRDDINVERPTLN*

JGI24925J35515_1001993

JGI24925J35515_10019932

F090256

VQSNTSTVTIDTGEIGEQLVEEFFPKAERTDDWFDSTKDGTIREKTYEVKTFRLNNRDQGFWVDSSQFRKLDNVDILYFVKIPESLEEGATIYECMEHKNEDAYEAFKLGPIKQMRCYFLDNCKKITNIRDERTDALYHNSVSLSKHNRYV*

JGI24925J35515_1002722

JGI24925J35515_10027223

F099328

LVLTXLLVLRIIQAGTADACFVFFNNRIFLGEDLRAAIVCQARKALFK*

JGI24925J35515_1002809

JGI24925J35515_10028092

F029246

MGSNLGLIAFGLIALFATSMIKIAAIAALGWGVYKAYRDWGAM*

JGI24925J35515_1005615

JGI24925J35515_10056152

F073088

MQVNQQIHLIQIQFDQFVFLNNTYYLKPEFQSTQKNVIENELNIFIDFKEIGTIVGVKIIKYRKIEEIHKI*

JGI24925J35515_1006337

JGI24925J35515_10063372

F022427

SGHAVFNTDGTILGQTSSGLAGAGGTYDIDQTSTGTINLDVNGASANVSIEQTSSGTVHIDAAGSAFTADIDQDNASTLSLHHDGASADYVILQTGGSGDILTLTVNGASANVDIIQRD*

JGI24925J35515_1009990

JGI24925J35515_10099901

F105359

MNNIDKIAKLIATLDNDGLNKIIPIFKAHRKTLAHATKLDLRVGMKVSWGAMAHGTIDKINRTKCVCTRNDGQKWTVPITMMRVQ*

JGI24925J35515_1011227

JGI24925J35515_10112271

F011338

RVKNLSDRAFTTFSANNAITLEGGAGDGEIILENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSNVDGETMRLSDINGTKSSQNHRINFAFPTEVTKSA*

JGI24925J35515_1011782

JGI24925J35515_10117822

F070936

EMREAIELKEKWNEKMSIKGLGEFRKAYETLKKSGVDKRFVASMEKFYDDLVIGGMYSSRAAEDAGIVKIDGKTKYKNANW*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002533: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_80

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences