3300010969: Microbial communities from the outside layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.out

Overview

Basic Information

• IMG/M Taxon OID: 3300010969
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121629 | Gp0157202 | Ga0139246
• Sample Name: Microbial communities from the outside layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.out
• Sequencing Status: Permanent Draft
• Sequencing Center: Hellenic Centre for Marine Research (HCMR)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 196554973
• Sequencing Scaffolds: 24
• Novel Protein Genes: 25
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium fuliginis	1
All Organisms → cellular organisms → Bacteria → Nitrospirae	1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon MnTg01	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Inactive Hydrothermal Chimney Metagenome Study
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Chimney Microbial Mat → Inactive Hydrothermal Chimney Metagenome Study

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent chimney → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: Kolumbo submarine Volcano, Hellenic Volcanic Arc, Aegean Sea, Greece
• Coordinates
  • Lat. (^o): 36.52
  • Long. (^o): 25.48
  • Alt. (m): N/A
  • Depth (m): 503

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005815	Metagenome / Metatranscriptome	389	Y
F015265	Metagenome / Metatranscriptome	256	Y
F025141	Metagenome / Metatranscriptome	203	Y
F035771	Metagenome / Metatranscriptome	171	Y
F039145	Metagenome / Metatranscriptome	164	Y
F040633	Metagenome / Metatranscriptome	161	Y
F055778	Metagenome / Metatranscriptome	138	Y
F082105	Metagenome / Metatranscriptome	113	Y
F083231	Metagenome / Metatranscriptome	113	Y
F087322	Metagenome	110	Y
F087396	Metagenome / Metatranscriptome	110	Y
F095691	Metagenome	105	Y
F099328	Metagenome / Metatranscriptome	103	Y
F102416	Metagenome	101	N
F105196	Metagenome / Metatranscriptome	100	Y
F105201	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0139246_1002564	All Organisms → cellular organisms → Bacteria	5733
Ga0139246_1007923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2717
Ga0139246_1008286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	939
Ga0139246_1009184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2147
Ga0139246_1014521	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	1482
Ga0139246_1016707	All Organisms → cellular organisms → Bacteria → Proteobacteria	1864
Ga0139246_1018073	All Organisms → cellular organisms → Bacteria	782
Ga0139246_1037437	Not Available	1507
Ga0139246_1040778	All Organisms → cellular organisms → Bacteria	1282
Ga0139246_1055789	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	809
Ga0139246_1067332	Not Available	2375
Ga0139246_1068927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium fuliginis	930
Ga0139246_1069828	All Organisms → cellular organisms → Bacteria → Nitrospirae	773
Ga0139246_1073376	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon MnTg01	937
Ga0139246_1096775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1224
Ga0139246_1097539	Not Available	992
Ga0139246_1099564	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	1057
Ga0139246_1110099	All Organisms → cellular organisms → Bacteria	1156
Ga0139246_1112868	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	2775
Ga0139246_1122267	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	4476
Ga0139246_1125507	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	625
Ga0139246_1125948	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	1363
Ga0139246_1126094	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	865
Ga0139246_1128351	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1056

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0139246_1002564	Ga0139246_10025647	F039145	MRIFLSSLLVSLTLLAGCSQEAINGPPELRPFIAELRENGVDGTLLLRAPFNKDMEYVAEYEISRYASTRVISLFKFKDAEKAEKNLQGAMXNDKLSGQARNGVFVIAATFYPPDEEAAGKIKELFLAHKFE*
Ga0139246_1007923	Ga0139246_10079234	F005815	MTMNSTRLTTYWTIDDAATVIDFLDLLRDALWXTYGDQIXQMYREAYDDRFQDPNQCELEFDDDIPF*
Ga0139246_1008286	Ga0139246_10082861	F005815	NKTPRTKTSHVTEPAMTMNSTRLTTYWTIDDAATVIDFLDLLRDALWETYGDQITQMYREAYDDRFQXPNQCELEFDDDIPF*
Ga0139246_1009184	Ga0139246_10091841	F005815	KTSHVTEPAMTMNSTRLTTYWTIDDAATVIDFLDLLRDALWETYGDQITQMYREAYDDRFQDPNQCELEFDDDIPF*
Ga0139246_1014521	Ga0139246_10145215	F015265	SAMYPDQITKNPTLIEKNAIVNLNNVGLPVFLNPIYDIIPIASPTKNPTKLRIFSNRNSNDD*
Ga0139246_1016707	Ga0139246_10167071	F105196	MPIIDRCRDPYGVLSDSRRALLEQLLKAPDQCLWERARGLIIRAIPIVTLENAXRAVRRNADAESAPDPFTLY
Ga0139246_1018073	Ga0139246_10180732	F005815	RTKTSHVTEPAMTMNSTRLTTYWTIDDAATVIDFLDLLRDALWETYGDQITQMYREAYDDRFQDPNQCELEFDDDIPF*
Ga0139246_1037437	Ga0139246_10374372	F055778	NPIMFRSVDFPEPELPTIRTNSPLLIENDTLSRAFTLLAPSP*
Ga0139246_1040778	Ga0139246_10407781	F035771	CGNVAKSRQRRSRHCVMLTYYEYAPRVKMAAALLDELF*
Ga0139246_1055789	Ga0139246_10557892	F105201	MLFHDEELDEEELNKCFAKFDSKTIELIXKEXTND*
Ga0139246_1067332	Ga0139246_10673321	F083231	MASKDGKXFXTIVLIGLAVNVLTAAYLLLMYFEVI*
Ga0139246_1068927	Ga0139246_10689272	F040633	MSVIGVRRAKAAFPSGCKSHPAILLQPEAIGAVMEVTK
Ga0139246_1069828	Ga0139246_10698281	F035771	NVEKSRQRRSRPFAVLTYWEYAPRIKRAAALLNGLF*
Ga0139246_1073376	Ga0139246_10733761	F102416	MGEIATNGDINMGENDWGMISKNPPMYESGVDNAVIEVTDIENKNHKITFKKGGVLNLGREGNTLYLAWDDSDTI*
Ga0139246_1096775	Ga0139246_10967752	F082105	MFIAPMAVLIWRDPHRCAEPPSVTVQRVVAGTIMRIDSAASGRANEKKYQK*
Ga0139246_1097539	Ga0139246_10975392	F095691	SIKIAWHADRFEALRVRARFRPSEELEGYASGVADVALLERSLADLRRALRKQYPGEFDLVTREPLSASWQVIISFHPPRGEPNPDPW*
Ga0139246_1099564	Ga0139246_10995642	F105201	MLFHDXELDXEELNKYFAKFDSKTIELIQKEYTNDR*
Ga0139246_1110099	Ga0139246_11100992	F087396	MEAAXCHDLSLTLEGFVLDEPTLVNSAVLSYLAMVASLIERRPIGREELLHWLRRSMRQRSMGQSLRREYVLRYLHQHPP*
Ga0139246_1112868	Ga0139246_11128683	F025141	MVPYYMIQCEYCPRGFIETANGLAEKTFHELLHEPEVVNK*
Ga0139246_1122267	Ga0139246_11222679	F105201	MLFHDEDLDEEEXNKCFAKXDSKTIELIQKEYXNDR*
Ga0139246_1123784	Ga0139246_11237841	F099328	TPRLVLRIIHAGTAEVCLVFFRRRIFLGEDLRAAIDFQARGALFK*
Ga0139246_1125507	Ga0139246_11255072	F015265	MYPDQITKNPALIEKNAIVNLNNVGLPVFLNPIYDIIPIASPTKNPAKLRIFSNRNSNDD
Ga0139246_1125948	Ga0139246_11259483	F105201	MLFHDEELDEEELNKYFAKFDSKTIELIQKEYTND*
Ga0139246_1126094	Ga0139246_11260941	F015265	PDFVTRSSAMYPDQITKNPTLIEKNAIVNLNNVGLPVFLNPIYDIIPIASPTKNPIKLRIFSNRNSNDD*
Ga0139246_1128351	Ga0139246_11283513	F087322	DLQALRFGLVLTPRLVLRIIHAGTAEVCLVFFRRRIFLGEDLRAAIDFQARGALFK*