3300009408: Marine microbial mats from Loihi Seamount, Hawaii, USA. Combined Assembly of Gp0139187, Gp0139188, Gp0139189, Gp0139190, Gp0139191, Gp0139192

Overview

Basic Information

• IMG/M Taxon OID: 3300009408
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118692 | Gp0139187 | Ga0117756
• Sample Name: Marine microbial mats from Loihi Seamount, Hawaii, USA. Combined Assembly of Gp0139187, Gp0139188, Gp0139189, Gp0139190, Gp0139191, Gp0139192
• Sequencing Status: Permanent Draft
• Sequencing Center: Oregon Health and Science University (OHSU), Western Washington University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 289114522
• Sequencing Scaffolds: 41
• Novel Protein Genes: 43
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria	3
Not Available	13
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	1
All Organisms → Viruses → Predicted Viral	11
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR0-AD1-C239	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium	1
All Organisms → cellular organisms → Archaea	1
All Organisms → Viruses → environmental samples → uncultured virus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Mats From Loihi Seamount, Hawaii, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: Loihi Seamount, Hawaii, USA
• Coordinates
  • Lat. (^o): 18.903
  • Long. (^o): -155.257
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001651	Metagenome / Metatranscriptome	657	Y
F003635	Metagenome / Metatranscriptome	476	Y
F004905	Metagenome / Metatranscriptome	419	Y
F007086	Metagenome / Metatranscriptome	358	Y
F013312	Metagenome	272	Y
F017722	Metagenome / Metatranscriptome	239	Y
F027204	Metagenome	195	N
F038410	Metagenome / Metatranscriptome	166	Y
F041287	Metagenome / Metatranscriptome	160	Y
F043986	Metagenome	155	Y
F064876	Metagenome / Metatranscriptome	128	N
F067779	Metagenome / Metatranscriptome	125	Y
F080507	Metagenome / Metatranscriptome	115	N
F088125	Metagenome	109	Y
F097602	Metagenome / Metatranscriptome	104	Y
F099328	Metagenome / Metatranscriptome	103	Y
F099485	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0117756_1000110	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	120327
Ga0117756_1001307	All Organisms → cellular organisms → Bacteria	19997
Ga0117756_1001326	Not Available	19877
Ga0117756_1005351	All Organisms → cellular organisms → Bacteria	7447
Ga0117756_1007709	Not Available	5557
Ga0117756_1009520	All Organisms → cellular organisms → Bacteria	4685
Ga0117756_1010924	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	4185
Ga0117756_1011888	All Organisms → Viruses → Predicted Viral	3894
Ga0117756_1012262	All Organisms → Viruses → Predicted Viral	3799
Ga0117756_1013865	All Organisms → Viruses → Predicted Viral	3440
Ga0117756_1015238	All Organisms → Viruses → Predicted Viral	3179
Ga0117756_1018427	All Organisms → Viruses → Predicted Viral	2728
Ga0117756_1018596	All Organisms → Viruses → Predicted Viral	2707
Ga0117756_1022531	All Organisms → Viruses → Predicted Viral	2314
Ga0117756_1028841	All Organisms → Viruses → Predicted Viral	1885
Ga0117756_1028945	All Organisms → Viruses → Predicted Viral	1880
Ga0117756_1029025	All Organisms → Viruses → Predicted Viral	1876
Ga0117756_1037621	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR0-AD1-C239	1512
Ga0117756_1040280	Not Available	1427
Ga0117756_1040317	Not Available	1426
Ga0117756_1044506	All Organisms → Viruses → Predicted Viral	1312
Ga0117756_1045138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1296
Ga0117756_1046124	Not Available	1272
Ga0117756_1049260	Not Available	1201
Ga0117756_1054734	Not Available	1096
Ga0117756_1061042	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	997
Ga0117756_1066413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8	926
Ga0117756_1068271	Not Available	904
Ga0117756_1070341	Not Available	881
Ga0117756_1077983	Not Available	803
Ga0117756_1078079	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	802
Ga0117756_1082427	Not Available	765
Ga0117756_1087161	Not Available	728
Ga0117756_1091503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium	697
Ga0117756_1092021	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	693
Ga0117756_1095115	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	673
Ga0117756_1097594	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	657
Ga0117756_1109383	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	593
Ga0117756_1121636	Not Available	540
Ga0117756_1124982	All Organisms → cellular organisms → Archaea	527
Ga0117756_1128031	All Organisms → Viruses → environmental samples → uncultured virus	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0117756_1000110	Ga0117756_100011028	F007086	MKTSAIIKIINEEIENVKWGRVNENLDSEDIEKIRSIIRKEVSAIFFDLFKKRRSWGG*
Ga0117756_1001307	Ga0117756_100130717	F041287	MEVCIKCGRPAAYICPYCDRKFCKSHMELRYVGPNRGFKSRYMCPVCWKKKQVVLNENMVKAREYRAKKYFYGP*
Ga0117756_1001326	Ga0117756_10013263	F088125	MMYLIDAGRVTLFSIFLVATLRFFYLAWQTRNTHSDDVVVQQHFMEHAVAAAFAFIGSLIGTLYSIVHLFSVEQGRLPEMPFTVALFFLLVSGVAFMIHMIKEQTPHHPFYVRENGDDA*
Ga0117756_1005351	Ga0117756_10053519	F088125	MMYLLDAGRVTLFSIFLVATLRFFYLAWQTHNAHSDDAVVQQHFLEHAVASSFAFIGSLIGVLYSIVHLFSAEQGTMPEIPFTVALFFLLVSGIAFMVHMIKEQSPSHPFYVRENGEDE*
Ga0117756_1007709	Ga0117756_10077098	F088125	MMYLLDAGRVTLFSIFLVATLRFFYLAWQTHNAHSDDTVVQQHFLEHAIASSFAFIGSLLGVLYSLVHLFSIEQGVMSEIPFTVSLFFLLVSGIAFMVHMIKEQNPSHPFYVRENGLDEAALKAKVEELESMSNV*
Ga0117756_1009520	Ga0117756_10095207	F088125	MMYLLDAGRVTLFSIFLVATLRFFYLAWHTRNAHSDDVVVQQHFMEHAVAASFAFTGSLIGVLYSIVHLFSIEQGIMSEMPFTWSLFFLLVSGIAFMVHMIKEQSPHHPFYVRENGQDE*
Ga0117756_1010924	Ga0117756_10109244	F088125	MMYLLDAGRVTLFSIFIVATLRFFYLAWQTRNAHSDDIIVQQHFMEHAIAASFAFTGSLIGVLYSIVHLFSVDQGVMSEIPFTASLFFLLASGIAFMVHMIKEQSPHHPFYVRENGEDE*
Ga0117756_1011888	Ga0117756_10118882	F088125	MMYLLDAGRVTLFSIFLVATLRFFYLAWQTHNAHADDAVVQQHFLEHAIASSLAFTGSLLGAIYSIVHLFSVEQGTMSEIPFTASLFFLLVSGIAFMVHMIKEQNPSHPFYVRENGLNEVVLKARIKELESMSNV*
Ga0117756_1012262	Ga0117756_10122624	F088125	MMYLLDAGRVALFSIFLVATLRFFYLAWQTHNAHSDDAVVQQHFLEHAIASSLAFTGSLLGVIYSIVHLFSIEQGIMSETPFTASLFFLLVSGIAFMVHMIKEQNPSHPFYVRENGLDEAALKARIEELESMSNV*
Ga0117756_1013865	Ga0117756_10138655	F088125	MMHLLDAGRVTLFSVFLVATVRFFYLAWQTRNAHSDDVVVQQHFMEHAVAASLAFIGSLLGTLYSIVHLFSAEQGMLSEIPFTISVLFLLISGIAFMIHMIKEQSPHHPFYVRENSEDD*
Ga0117756_1015238	Ga0117756_10152382	F088125	MMYLLDAGRVTLFSIFLVATLRFFYLAWQTHNAHSDDAVVQQHFLEHAIASSFAFIGSLLGAIYSIVHLFSVEQGTMSEIPFTASLFFLLLSGIAFMVHMIKEQNPSHPFYVRENGLNEVVLKARIKELESMSNV*
Ga0117756_1018427	Ga0117756_10184272	F088125	MMYLLDAGRVTLFSIFLVATLRFFYLAWQTRNAHSDDIVVQQHFLEHAIAASFAFIGSLLGVLYSIVHLFSIEQGVMSEIPFTASLFFLLASGIAFMVHMIKEQSPHHPFYVRENGEDD*
Ga0117756_1018596	Ga0117756_10185965	F088125	MMYLIDAGRVALFSIFLVATLRFFYLAWQTHNAHSDDVVVQQHFLEHAIASSFAFIGSLLGMLYSLVHLFSVEQGVLSEIPFTISMLFLLISGIAFMVHMIKEQTPHHPFYVRENGEDE*
Ga0117756_1022531	Ga0117756_10225315	F088125	MMYLLDAGRVTLFSIFLVATVRFFYLAWQTRNAHSDDVVVQQYFMEHAVAASLAFIGSLLGTLYSIVHLFSAEQGVLSEMPFTISVLFLLISGIAFMIHMIKEQTPHHLFYIRENGEDD*
Ga0117756_1028841	Ga0117756_10288412	F088125	MMYLLDAGRVALFSIFIAATLRFFYLAWQTRNAHSDDAVVQQHFLEHAIAASFAFIGSLLGVIYSIVHLFSIEQGTMSEMPFTVALFFLLVSGIAFMVHMIKEQNPSHPFYVRENGLNEAELKARIKELESMSNV*
Ga0117756_1028945	Ga0117756_10289453	F088125	MMYLLDAGRVTLFSIFLVATLRFFYLAWQTRNAHSDDAVVQQHFLEHAIASSFAFIGSLLGVLYSLVHLFSIEQGVMSEMPFTVSLFFLLVSGIAFMVHMIKEQNPSHPFYVRENGLDEAALKAKVEELESMSNV*
Ga0117756_1029025	Ga0117756_10290252	F088125	MMYLLDAGRVVLFAAFLVATLQFFYLSWQTRNAHSDDVVVQQHFLEHAIAAAFAFIGSLLGVLYSIVHLFSVEQGVLSETPFTVSMLFMLISGVAFMIHMIKEQTPHHPFYIRENNEDD*
Ga0117756_1037621	Ga0117756_10376212	F017722	MDQGEMDTFRRLVDEAQVTMTKADEIDAAASQVRKLRGEFNQPLNAIPVTSNDVAVYNAMDTTARIKNDYKPASYIKGLPAMAQPLWVQEQMGDNVKDEARFMSDTFVKWMRSPSDDMFWKTATPDEAKAMQEDTDKLLCPVN*
Ga0117756_1040280	Ga0117756_10402802	F088125	MTLLDAGRVALFSVFLVATLRFFYLSWQTRDAHSDDVVVQQHFMEHVVAAAFAFIGSLLGVLYSIVHLFSTEQGVLSEMPFTVSLVFLLVSGVAFMIHMIKEQTPHHPFYIRENNEDD*
Ga0117756_1040317	Ga0117756_10403173	F088125	MYLLDAGRVTLFSIFFVATVRFFYLAWQTHNIHSDDVVVQQHFMEHAIAAVFAFIGSLIGVLYSLVHLFSIEQGVLSEMPFSISMLFLLISGIAFMVHMIKEQTPHHPFYVRENGEDE*
Ga0117756_1044506	Ga0117756_10445062	F088125	MMYLLDAGRVALFTVFLVATLKFFYLAWQTRNAHSDDPVVQQHFLEHAVAAAFAFVGSLIGAIYSIVHLFSVEQGGLPEMPFTAALFFLLLSGIAFMLHMIKEQTPYHPFYVRENGDDD*
Ga0117756_1045138	Ga0117756_10451382	F097602	VTILAGEGPSDLGRCNCDTLSPKRCSDVVVMNRGSADEAVVIVKFGADEFMVTWRRVKHRIRDRKSEVKGGTRKRPWPLIKDWWFEISLTGAIHYLRRKQ*
Ga0117756_1046124	Ga0117756_10461242	F088125	MMYLLDAGRVTLFSMFIAATLRFFYLAWQTRNAHSDDAVVQQHFLEHAIASSLAFIGSLLGAIYSIVHLFSVEQGTMSEIPFTASLFFLLVSGIAFMVHMIKEQNPSHPFYVRENGINEAELKAKIEELESMSNV*
Ga0117756_1049260	Ga0117756_10492602	F088125	MMYLLDAGRVALFSIFLVATLRFFYLAWQTHNAHSDDAVVQQHFLEHAIASSFAFIGSLLGVIYSIVHLFSIEQGIMSETPFTASLFFLLLSGIAFMVHMIKEQNPSHPFYVRENGLNEAVLKARIKELESMSNV*
Ga0117756_1054734	Ga0117756_10547343	F088125	VTLFSIFLVATLRFFYLAWQTRNAHSDDIVVQQHFLEHAIAASFAFIGSLLGVLYSIVHLFSVEQGTMSEIPFTASLFFLLASGIAFMVHMIKEQSPHHPFYVRENGEDD*
Ga0117756_1061042	Ga0117756_10610422	F088125	MMYLLDAGRVTLFSAFLIATLRFFYLAWQTRNAHSDDAVVQQHFMEHAMASSFAFIGSLIGVVYSIVHLFSIKQGIMSEIPFTVSLFFLLASGIAFMIHMIKEQTPHHLFYIRENGEDD*
Ga0117756_1066413	Ga0117756_10664131	F064876	MATYTDRVEKSVTHYEPGPLPSDPESLGVYTVDELKRLGNVLFNQATFRLERTNVVPDKPRPGDIRYFDGTNADPVGNGIEGLYVYKKGSHWVNVLALDEGTVEITGASGDLALEIDNNVANSANLKIRCDAGSLRSDFYVDNEVHITLKGQRVGILDTSPTYTLDVFGYGRFVQQLTVDDGIACADTVVSRPRFTDYAE
Ga0117756_1068271	Ga0117756_10682711	F043986	IILSLFIVLLLGGCDFKNVRHKIGFTTKPFSKNDGFENSTKMNYTIIFGVVRPKEDDD*
Ga0117756_1070341	Ga0117756_10703414	F027204	MRNDYKPWKKGIRVAKQFGGALAGQLGAAARPIARTLGYKKGERVYKKGGSAK*
Ga0117756_1077983	Ga0117756_10779831	F088125	SLARHYTSYARRCKMMYLLDAGRVTLFSIFLVATLRFFYLAWQTRNAHSDDAVVQQHFLEHAIAASFAFIGSLIGVLYSIVHLFSVEQGTMSEMPFTASLFFLLASGIAFMVHMIKEQSPHHPFYVRENGEDD*
Ga0117756_1078079	Ga0117756_10780791	F004905	MRRKVNFQQSEYIQDGEVVCFGVSEHFFEESKHKWSEKAQKDLNVLQSWFSRDKFDEVATRPVYRSDFNWTSYHTRAQLRVLLGLAFIRELPIRNFYIRCWIAYSYIVFFVIRGIGRGMTVARPIVMYNNGIHAKTLANYPDLFWWNIGRRLPKATPVPDVHREWQTRQTPVFHQYHKTAYRYRNRKPRYVPWDGTTSQPVMPYLHDDGTDVINGTFKRNCNSAPHLH*
Ga0117756_1082427	Ga0117756_10824272	F013312	LLKAGISPGVNNITLFIQRNQAYVVTILGLISSADNTTCNLFAVAAVTFIISLSATTSGAESSSDVPLAEIALTLKRLKTASSVSVIVIVIVSAFPESSDTRIDLITAVVAVGTVYNVVADVLVKSTFLFTNVLAIMP*
Ga0117756_1087161	Ga0117756_10871612	F088125	MMYLLDAGRVALFSIFLVATLRFFYLAWQTHNAHSDDAVVQQHFLEHAIASSFAFIGSLLGAIYSIVHLFSVEQGTMSEIPFTASLFFLLVSGIAFMVHMIKEQNPSHPFYVRENGLNEAALKAKIKELESMSNV*
Ga0117756_1091503	Ga0117756_10915031	F001651	MKMAGATEQAIADQLGVSRAQVWNDVKRRLAEVRRDDKEAVQQEYNLQRSRYERLLLRWWSQATGPDDTQAARATGIVLDILRRLDTIGGLIPEKPLIQLQQQNVMVGGVTFADLLREAMDGAGQIVEGERVDMGTDLAVEN*
Ga0117756_1092021	Ga0117756_10920212	F088125	MMYLIDAGRVALFVVFLVATLRFFYLAWQTRNAHSDDTVVQQHFLEHAIAAAFAFMGSLLGTLYSIVHLFSVEQGMMAEVPFTASLFFLLASGIAFMLHMIKEQTPHHPFYVRENGDDA*
Ga0117756_1095115	Ga0117756_10951151	F004905	MRRKVNFQQSEYIQDGEVVCFGVSEHFFEESKHKWSEKAQKDLNVLQSWFSRDKFDEVATRPVYRSDFNWTSYHTRAQLRVLLGLAFIRELPIRNFYIRCWIAYSYIVFFVIRGIGRGMTVARPIVMYNNGIHAKTLANYPDLFWWNIGRRLPKATPVPDVHREWQTRQTPVFHQYHKTAYRYRNRKPRYVPWDGTTSQPVMPYLHDD
Ga0117756_1097594	Ga0117756_10975942	F067779	MKNPMSYMYWKTQTLHSQNRVRIIWVLLWFHLYSSFVAFVFIKNKKEGMMDHWRHAIGDINKTTGSIHNDQRMPADHKKNYVRYSNFHQVRRNKKLSMIWLNWWCRDQSFRKYFEMRKRHGIKPSLSGFSHEHIY
Ga0117756_1099306	Ga0117756_10993061	F099328	VLTLLLVLRIIQAGTADVCFVFFNRRIFRGEDLRAAIEFQARRALFK*
Ga0117756_1109383	Ga0117756_11093831	F038410	MQFYHTFSIMRPIFSRFMTVTQGPLNYSGLLSFTFFTIFVWSRFRFIRGRDFVAFNQQDNPEFWFARYEMMFPPNFLHNRISAHYIEINHIFSFEMIRKYQLVRKQVLEEREHASDKDKRTKYITNSNYVYEPLG*
Ga0117756_1121636	Ga0117756_11216362	F088125	MFIAATLRFFYLAWQTRNAHSDDVVVQQHFLEHAIASSLAFIGSLLGVLYSIVHLFSVEQGTMSEIPFTASLFFLLVSGIAFMVHMIKEQNPSHPFYVRENGLNE
Ga0117756_1122530	Ga0117756_11225302	F080507	LDTKELRSQAGALLDQAQVAMDQGEMDTFRRLVDEAQVTMTKADEIDAAASQVRKLRGEFNQPLNAIPVTSNDVAIYNAMDTTARIKNDYKPASFIKGLPAMAQPLWVQEQMGDNVKDEARFM
Ga0117756_1124982	Ga0117756_11249821	F099485	MKQQIIHNWQHSPSKTQVARTPVKVVSKPLQQSQTITNEDLMGLSWILFEESD*
Ga0117756_1128031	Ga0117756_11280312	F003635	MNEKNTDQLLKLMDDLIKLVGKNVDNINRLGEEIAELKKDKQ*