NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2049941003

2049941003: Hydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California, Sample 420



Overview

Basic Information
IMG/M Taxon OID2049941003 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0045864 | Gp0051629 | Ga0010727
Sample NameHydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California, Sample 420
Sequencing StatusPermanent Draft
Sequencing CenterPennsylvania State University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size50490754
Sequencing Scaffolds43
Novel Protein Genes48
Associated Families45

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available29
All Organisms → Viruses → Predicted Viral4
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHydrothermal Vent Microbial Communities From Guaymas And Carmen Basins, Gulf Of California
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Hydrothermal Vent Microbial Communities From Guaymas And Carmen Basins, Gulf Of California

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biomemarine hydrothermal venthydrothermal fluid
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationGulf of California
CoordinatesLat. (o)27.823Long. (o)-111.4Alt. (m)N/ADepth (m)1996
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F001334Metagenome / Metatranscriptome720Y
F003091Metagenome / Metatranscriptome508Y
F003285Metagenome / Metatranscriptome496Y
F004643Metagenome / Metatranscriptome429Y
F005399Metagenome / Metatranscriptome402Y
F005429Metagenome / Metatranscriptome401Y
F005608Metagenome / Metatranscriptome395Y
F005685Metagenome / Metatranscriptome393Y
F006640Metagenome / Metatranscriptome368Y
F006959Metagenome / Metatranscriptome361Y
F007004Metagenome / Metatranscriptome360Y
F007055Metagenome / Metatranscriptome359Y
F008561Metagenome / Metatranscriptome331Y
F010477Metagenome / Metatranscriptome303Y
F010876Metagenome / Metatranscriptome298Y
F012162Metagenome / Metatranscriptome283Y
F013899Metagenome / Metatranscriptome267Y
F015261Metagenome / Metatranscriptome256Y
F015265Metagenome / Metatranscriptome256Y
F016619Metagenome / Metatranscriptome246Y
F016675Metagenome / Metatranscriptome245Y
F016731Metagenome / Metatranscriptome245Y
F017326Metagenome / Metatranscriptome241N
F019388Metagenome / Metatranscriptome230N
F021856Metagenome / Metatranscriptome217Y
F021857Metagenome / Metatranscriptome217Y
F026028Metagenome / Metatranscriptome199Y
F027016Metagenome / Metatranscriptome196Y
F028526Metagenome / Metatranscriptome191Y
F032311Metagenome / Metatranscriptome180Y
F035798Metagenome / Metatranscriptome171Y
F036737Metagenome / Metatranscriptome169Y
F037503Metagenome / Metatranscriptome168Y
F041256Metagenome / Metatranscriptome160Y
F045151Metagenome / Metatranscriptome153N
F047304Metagenome / Metatranscriptome150Y
F055778Metagenome / Metatranscriptome138Y
F058538Metagenome / Metatranscriptome135N
F062152Metagenome / Metatranscriptome131Y
F070217Metagenome / Metatranscriptome123N
F070560Metagenome / Metatranscriptome123N
F072442Metagenome / Metatranscriptome121Y
F084730Metagenome / Metatranscriptome112Y
F099328Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
GB_4MN_4MetaGsffNew_c11667Not Available1615Open in IMG/M
GB_4MN_4MetaGsffNew_c12863All Organisms → Viruses → Predicted Viral1874Open in IMG/M
GB_4MN_4MetaGsffNew_c13566Not Available681Open in IMG/M
GB_4MN_4MetaGsffNew_c13670Not Available707Open in IMG/M
GB_4MN_4MetaGsffNew_c14669All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote720Open in IMG/M
GB_4MN_4MetaGsffNew_c16331Not Available668Open in IMG/M
GB_4MN_4MetaGsffNew_c1638All Organisms → Viruses → Predicted Viral1129Open in IMG/M
GB_4MN_4MetaGsffNew_c16891Not Available985Open in IMG/M
GB_4MN_4MetaGsffNew_c19436Not Available919Open in IMG/M
GB_4MN_4MetaGsffNew_c19494All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus883Open in IMG/M
GB_4MN_4MetaGsffNew_c20889Not Available1406Open in IMG/M
GB_4MN_4MetaGsffNew_c23495Not Available626Open in IMG/M
GB_4MN_4MetaGsffNew_c24111Not Available580Open in IMG/M
GB_4MN_4MetaGsffNew_c26595Not Available555Open in IMG/M
GB_4MN_4MetaGsffNew_c27235Not Available535Open in IMG/M
GB_4MN_4MetaGsffNew_c27988All Organisms → Viruses → Predicted Viral1071Open in IMG/M
GB_4MN_4MetaGsffNew_c28617Not Available628Open in IMG/M
GB_4MN_4MetaGsffNew_c2872Not Available1854Open in IMG/M
GB_4MN_4MetaGsffNew_c304All Organisms → cellular organisms → Bacteria1526Open in IMG/M
GB_4MN_4MetaGsffNew_c3078Not Available1523Open in IMG/M
GB_4MN_4MetaGsffNew_c31419All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis656Open in IMG/M
GB_4MN_4MetaGsffNew_c32204Not Available616Open in IMG/M
GB_4MN_4MetaGsffNew_c35155Not Available536Open in IMG/M
GB_4MN_4MetaGsffNew_c35227Not Available553Open in IMG/M
GB_4MN_4MetaGsffNew_c4037Not Available757Open in IMG/M
GB_4MN_4MetaGsffNew_c42071Not Available748Open in IMG/M
GB_4MN_4MetaGsffNew_c4250All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote670Open in IMG/M
GB_4MN_4MetaGsffNew_c45645Not Available542Open in IMG/M
GB_4MN_4MetaGsffNew_c47016Not Available583Open in IMG/M
GB_4MN_4MetaGsffNew_c4784All Organisms → Viruses → Predicted Viral1553Open in IMG/M
GB_4MN_4MetaGsffNew_c4875Not Available632Open in IMG/M
GB_4MN_4MetaGsffNew_c561All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus4307Open in IMG/M
GB_4MN_4MetaGsffNew_c5723Not Available523Open in IMG/M
GB_4MN_4MetaGsffNew_c61693Not Available504Open in IMG/M
GB_4MN_4MetaGsffNew_c6374Not Available665Open in IMG/M
GB_4MN_4MetaGsffNew_c6762All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria971Open in IMG/M
GB_4MN_4MetaGsffNew_c692All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria818Open in IMG/M
GB_4MN_4MetaGsffNew_c7134Not Available1504Open in IMG/M
GB_4MN_4MetaGsffNew_c8300All Organisms → cellular organisms → Archaea598Open in IMG/M
GB_4MN_4MetaGsffNew_c8643Not Available564Open in IMG/M
GB_4MN_4MetaGsffNew_c8938All Organisms → cellular organisms → Bacteria → Proteobacteria1256Open in IMG/M
GB_4MN_4MetaGsffNew_c91801Not Available629Open in IMG/M
GB_4MN_4MetaGsffNew_c9744Not Available1247Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
GB_4MN_4MetaGsffNew_c11667GB_4MN_00242260F012162MLLTEEQTKYYLTDMIQFYGEKEHNTKGNFSWQRSEAEYRRKTFEDMKIVLFGDDYNEDQRAKFT
GB_4MN_4MetaGsffNew_c12863GB_4MN_00782480F004643LNDLAKYYDKEFWEENGWVSCFECDIIFEDLEKLYEHQDLHLEEEKK
GB_4MN_4MetaGsffNew_c13566GB_4MN_00455730F007004MKNLLIGISLLLFVGCANSNAYERPTVRIVGEAQMTKLPNGNYEVTPRWIKDRFNTENSMVKQLEDCRENK
GB_4MN_4MetaGsffNew_c13670GB_4MN_00159940F016731LAISLILTSCAKHNTDDKVHNDLGSGDKSKLPVSLDLLIEHAEYCKAIYDSGGSQKDEVAFRSKTRKWNNNYCY
GB_4MN_4MetaGsffNew_c14542GB_4MN_00191410F070217SAASMVISESQAKEAMGANFDPNCFSDSCAIAVGKSFNLSNVITFGIINVKKIADSTDVDTLLAEKDSIITATIIMKNFHIGTGQIASEMTFPFEGNTEKLLMTARRMVWTAVGVEPPPGRFPEDLIDNKVSLKKRILDFYYGTVVPWVQDNTEMTMIIGGILIISGGWLIFGGSGDGGGFDGPPDFPDDPPSMVQL
GB_4MN_4MetaGsffNew_c14669GB_4MN_00072630F013899LSAAINSLFPDTCAIEEGERGQFELFQSGKSFMSAGYGKFFDLEDVKKKLTESGQDLFTN
GB_4MN_4MetaGsffNew_c16331GB_4MN_00856340F062152MGAHYTNALVNHINKLNQQTIDRGAVGILTNDPSHWAGYGVYTIGDFQLYLEREHERNMYKSQLGE
GB_4MN_4MetaGsffNew_c16353GB_4MN_00534160F099328MIQAGTGDVCLVFLSRRIFLGEDLRAAIDFQARRALFK
GB_4MN_4MetaGsffNew_c1638GB_4MN_00569910F000615VRRNQNNIVSGLERPVNIMCRIRSFYECSDGTMGFAEMVVSYDEDIAGLIRHWGTGGRMVITEHVEMTV
GB_4MN_4MetaGsffNew_c16891GB_4MN_01108770F045151MDKLVDAGVGHISVVDNLFDIEDMGDDIENMEDVEDTMSVIKSCVESLQIENKESLNLLMQNLYNEALTVETI
GB_4MN_4MetaGsffNew_c19436GB_4MN_01285210F070560YYKHYLQNIMLMTNQTQQFKQLVSSAKPETQIPKTESMVTVSSLMSTADQVQFGKGLSSIFVDVPHHTSGESQIFSVRPQQLVPRSAVIQRDESSQLVGISAVSGG
GB_4MN_4MetaGsffNew_c19494GB_4MN_00677580F015265MYPDHITKKPKLIERNAIVNLNNVGLPVFLNPMYDIIPMASPTKNPIRLSIFSNKNSNVA
GB_4MN_4MetaGsffNew_c20889GB_4MN_00164830F047304MEIKPQYYGAVITGNMVTEKELKKLKKNGGFVKCPTRKAQGSKNARWGQVGK
GB_4MN_4MetaGsffNew_c23495GB_4MN_00227390F021856MKDKKLIELFKDSAERLTKKAKNNSSAIHTMGGYGEIEHGRVCPFRSVPFEDCPLCILDSLDKL
GB_4MN_4MetaGsffNew_c24111GB_4MN_00907240F005685MKKFNEYSSFEDKILGTLKRGPCDLMTLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKRTKKS
GB_4MN_4MetaGsffNew_c26595GB_4MN_00168220F008561MKFDELIEHYERAIGFNSTVKGVPMSEENLELCREFVTDIHDCPRQDVRVMYRGPRTSYAHATLRKDALSFDVYHTPRYS
GB_4MN_4MetaGsffNew_c27235GB_4MN_01070990F032311MKPNKPAFKFPSPNSDMMIHVFLRPMKGKKGMMAFNYQMEDK
GB_4MN_4MetaGsffNew_c27988GB_4MN_01020120F036737MSVILVTVGLVFGAYLYQPLWFDSGPYHYVSSHEALADCEKAKLGNEHAVCANGELYMKDSSVSKTXKVETIEVNDFVFTIDKQDSTDTTMKSHWNE
GB_4MN_4MetaGsffNew_c28617GB_4MN_00411890F003091MSTHPVKPITKPGEGNERQKYLSEEKYLEERYQISAGLRGPKRLEKESHEDFHLRRKAENGLLKEYRRGVWMTDGECTAANPPCRNCE
GB_4MN_4MetaGsffNew_c2872GB_4MN_00045650F010876MEIDKTAVNYNSSPLYRFLLTDGKFKGVEFYFKNVELDHHNTPGSFDISYGYEIIGGNYRNDGWEEDMEHMNRIVNEKNKDQFEVEIGKILKNLLILNDPRVILHKGKDA
GB_4MN_4MetaGsffNew_c304GB_4MN_00508490F001334MKFKEYLQLNADDSIEQVMDGEWILKSRTTWKATDDEDNKIEIHNDGHDPELNGESWSVHTNTFAPKAFAFFCKQFIKEAKPSEVTHARSRIYPQPSN
GB_4MN_4MetaGsffNew_c304GB_4MN_00508500F003285MPDQESIHNLQTEIQTLKIKDEFRTKELDALMKKLSDTSSKLNELSENIGRLLAGQDLHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTEAKIDSDISLLNKKVDSLEKWRWITIGIATAIAWLLTNIIPKFLNN
GB_4MN_4MetaGsffNew_c3078GB_4MN_00423670F010477MKIYVQIRYLVFIPYLIFIGMMGGNILAESIVVGIALAIYDFFFDNDG
GB_4MN_4MetaGsffNew_c3078GB_4MN_00423680F026028MSICSNCYHRIKHKKAIEVGQLWNNEPFLGVVCSDKCKEEIEKKVADGTWMVMRSFPKITEEEDGLPTALTDKQFGTT
GB_4MN_4MetaGsffNew_c3078GB_4MN_00423700F007055MTVIWIAIVMTWNPVIYTIDKEFSSEVNCWNYYDNGAGESEMRSRYGTQVLDHQDNKPDKDYMKKHRPAHREYPTRIYKNHGGWMVWLTCDIKEGMKDYD
GB_4MN_4MetaGsffNew_c31419GB_4MN_01187360F037503MHLGAASRLIVIEVELLIGCGGFTAYQILTNSECYNIYSAVRAWVLRSMSERERTQTIS
GB_4MN_4MetaGsffNew_c32204GB_4MN_00258410F041256MNLNEYLIENDRYIGDVVLLFSVGTALDKISGDTFPMLLGGKIGVDEPMNLMEMDFNDDSWEWYNALGFGDKGIVDEVMEDLKNESEYKSKQV
GB_4MN_4MetaGsffNew_c35155GB_4MN_00662270F016619FILFMAITIVHNADHKSLTGKTLSIQSELTSKLKTTIVDVTYAAGDNYATNGNTVDLSLGSRINTVIGAEILHCNKGLLLQYAPAAAGAAATGKIKAFGHTPTSATATVVALEELDNADTAVNSMTIRIRVIGF
GB_4MN_4MetaGsffNew_c35227GB_4MN_00805750F005608IEVLEEGELIFGSPTAGKYFVRRYEDGEEMGGGFFKTKKEALTHAREYKKSE
GB_4MN_4MetaGsffNew_c4037GB_4MN_00601200F005399MKTAIELDVFQEMKLDENSGEIVMRPMAEMMDAPLDYIDEEDEPDWASLLKVLTETMIDPYTVSASTEVPNEKDYHMMVAASEDLFSVANDFARKVEELHTIDPKEYQERMKRFEQGTFWPSENHGSVEEE
GB_4MN_4MetaGsffNew_c42071GB_4MN_00069950F015261MPVNIVWEDGDATISILCDGCDKEYEILSKDTDGLEMCPFCGHYLEVDSESGEVNESEEDSWD
GB_4MN_4MetaGsffNew_c4250GB_4MN_00536590F017326MIMNDYEKVKIEINESVTSDNFKEHLRKNYHNSYDEYLDDTRHIDLDVYYEKNSIPINQLVPKGMTIKEYFGKEQRLLRGENISYVKFDD
GB_4MN_4MetaGsffNew_c45645GB_4MN_00560680F047304MSEIKPQYYGAVITNNMVSDKDIKRLKKEGGFIKCPTRXAKGSKNARWGQCK
GB_4MN_4MetaGsffNew_c47016GB_4MN_00448530F028526LKLVKKVSKPDYTMHFMEDRYGRKAMFYNYKGVEIKKDECCILKATIAEHRRSKFDNGKPLTYLNRVTVHRNLGTKENPKIVFGEEGX
GB_4MN_4MetaGsffNew_c4784GB_4MN_00137850F005429MRQETVDEYLKRGGTIEQIPEVLDTLGSWWGYQARYQTESLKDGTQQVVSWKSVQPDERFDTEDDDRKYWNKLNKRCDQLLKKMKVK
GB_4MN_4MetaGsffNew_c4875GB_4MN_00741490F021857MTIIDKKEVKIKVRSRFCAICDSQFRWQCKCPNNKVMVEQVNRSFKAGKRYRGKRALEYCNTLEEELKQDENI
GB_4MN_4MetaGsffNew_c561GB_4MN_01080230F055778MFNNVDFPEPELPTIKTTSPCSIEKDTSSRALTLLSPSP
GB_4MN_4MetaGsffNew_c5723GB_4MN_00178650F019388SLKGTVMRTEQNPYLVETKKGQILKFSRIDADNEAVSKQLDGDDVEVYHDGKLQYKLHGIEQGKLF
GB_4MN_4MetaGsffNew_c61693GB_4MN_00563410F007004LFVGCANSNAYERPTVRIVGEAQMTKLPNGNYEVTPRWIKDRFNAENSMVKQLEDCRENK
GB_4MN_4MetaGsffNew_c6374GB_4MN_00524230F035798NADLYEISKEEKLAHDTALISEAGDDMCSIPLEKLKSKIMRDRHKKMCVTPKKVNTKSIWSKAAQKAAGGRHKLYNSLEEGPDDNLVVLIRDITSQMIGAIKKKDQKN
GB_4MN_4MetaGsffNew_c6762GB_4MN_00273470F058538MYSQYETTVINRRRLHDLLAWVNQKYYLEYEVVQENRDVFYVIFHDLSIKQTVSIQHQIKGSSQPEHFDLH
GB_4MN_4MetaGsffNew_c692GB_4MN_00869040F084730VEPVFTVGYFSYLNCIASGVYLYDLGNRIYGYGTPKRALIFFNSFYK
GB_4MN_4MetaGsffNew_c7134GB_4MN_01189350F021857MTIIDKKEIKIKVRSRFCAICDSQFRWQCKCPNNKVMAKQVKKSFHDGKRYRGKRALEYCYETEKDEKL
GB_4MN_4MetaGsffNew_c8300GB_4MN_00526900F006959MYYETQVVFTEEIDTKNGVKEKKVRRNYLIECDSVSVAEAKVTEFLKDSAFFFEVKVDKG
GB_4MN_4MetaGsffNew_c8643GB_4MN_01073500F072442MKTFKEFFQLGVTKPSKFDVQNYLNSLGTRLMQLPDIKKKIIKHFKNIKNLKLDSFGKKVLSFEEYIPEEITKRDIK
GB_4MN_4MetaGsffNew_c8938GB_4MN_00032020F006640MIELLIFGLVLLSVICLWLLIEGRKSPKFLVWFIPLVLILVSSTYVTYTSILGYPRIAKPKEGLYLKHYIDEPN
GB_4MN_4MetaGsffNew_c91801GB_4MN_01078450F027016MLAEVKNLIDDINEPKPTHLRQFIHPQWGTILGSEKDIRIAALKDEVEIWEQRVEDDPDSIPYLGYIRDTLKSRIEELKGH
GB_4MN_4MetaGsffNew_c9744GB_4MN_00593430F016675MKNFEVDYETTLPPWHIGHEKIEAEDLDTVKRMFHSKHEAARLRKITEVLFVAPL

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