Basic Information | |
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IMG/M Taxon OID | 2049941003 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045864 | Gp0051629 | Ga0010727 |
Sample Name | Hydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California, Sample 420 |
Sequencing Status | Permanent Draft |
Sequencing Center | Pennsylvania State University |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 50490754 |
Sequencing Scaffolds | 43 |
Novel Protein Genes | 48 |
Associated Families | 45 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 29 |
All Organisms → Viruses → Predicted Viral | 4 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 2 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus | 2 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 2 |
All Organisms → cellular organisms → Archaea | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Hydrothermal Vent Microbial Communities From Guaymas And Carmen Basins, Gulf Of California |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Hydrothermal Vent Microbial Communities From Guaymas And Carmen Basins, Gulf Of California |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
Location Information | ||||||||
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Location | Gulf of California | |||||||
Coordinates | Lat. (o) | 27.823 | Long. (o) | -111.4 | Alt. (m) | N/A | Depth (m) | 1996 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000615 | Metagenome / Metatranscriptome | 984 | Y |
F001334 | Metagenome / Metatranscriptome | 720 | Y |
F003091 | Metagenome / Metatranscriptome | 508 | Y |
F003285 | Metagenome / Metatranscriptome | 496 | Y |
F004643 | Metagenome / Metatranscriptome | 429 | Y |
F005399 | Metagenome / Metatranscriptome | 402 | Y |
F005429 | Metagenome / Metatranscriptome | 401 | Y |
F005608 | Metagenome / Metatranscriptome | 395 | Y |
F005685 | Metagenome / Metatranscriptome | 393 | Y |
F006640 | Metagenome / Metatranscriptome | 368 | Y |
F006959 | Metagenome / Metatranscriptome | 361 | Y |
F007004 | Metagenome / Metatranscriptome | 360 | Y |
F007055 | Metagenome / Metatranscriptome | 359 | Y |
F008561 | Metagenome / Metatranscriptome | 331 | Y |
F010477 | Metagenome / Metatranscriptome | 303 | Y |
F010876 | Metagenome / Metatranscriptome | 298 | Y |
F012162 | Metagenome / Metatranscriptome | 283 | Y |
F013899 | Metagenome / Metatranscriptome | 267 | Y |
F015261 | Metagenome / Metatranscriptome | 256 | Y |
F015265 | Metagenome / Metatranscriptome | 256 | Y |
F016619 | Metagenome / Metatranscriptome | 246 | Y |
F016675 | Metagenome / Metatranscriptome | 245 | Y |
F016731 | Metagenome / Metatranscriptome | 245 | Y |
F017326 | Metagenome / Metatranscriptome | 241 | N |
F019388 | Metagenome / Metatranscriptome | 230 | N |
F021856 | Metagenome / Metatranscriptome | 217 | Y |
F021857 | Metagenome / Metatranscriptome | 217 | Y |
F026028 | Metagenome / Metatranscriptome | 199 | Y |
F027016 | Metagenome / Metatranscriptome | 196 | Y |
F028526 | Metagenome / Metatranscriptome | 191 | Y |
F032311 | Metagenome / Metatranscriptome | 180 | Y |
F035798 | Metagenome / Metatranscriptome | 171 | Y |
F036737 | Metagenome / Metatranscriptome | 169 | Y |
F037503 | Metagenome / Metatranscriptome | 168 | Y |
F041256 | Metagenome / Metatranscriptome | 160 | Y |
F045151 | Metagenome / Metatranscriptome | 153 | N |
F047304 | Metagenome / Metatranscriptome | 150 | Y |
F055778 | Metagenome / Metatranscriptome | 138 | Y |
F058538 | Metagenome / Metatranscriptome | 135 | N |
F062152 | Metagenome / Metatranscriptome | 131 | Y |
F070217 | Metagenome / Metatranscriptome | 123 | N |
F070560 | Metagenome / Metatranscriptome | 123 | N |
F072442 | Metagenome / Metatranscriptome | 121 | Y |
F084730 | Metagenome / Metatranscriptome | 112 | Y |
F099328 | Metagenome / Metatranscriptome | 103 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
GB_4MN_4MetaGsffNew_c11667 | Not Available | 1615 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c12863 | All Organisms → Viruses → Predicted Viral | 1874 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c13566 | Not Available | 681 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c13670 | Not Available | 707 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c14669 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 720 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c16331 | Not Available | 668 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c1638 | All Organisms → Viruses → Predicted Viral | 1129 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c16891 | Not Available | 985 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c19436 | Not Available | 919 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c19494 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus | 883 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c20889 | Not Available | 1406 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c23495 | Not Available | 626 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c24111 | Not Available | 580 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c26595 | Not Available | 555 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c27235 | Not Available | 535 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c27988 | All Organisms → Viruses → Predicted Viral | 1071 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c28617 | Not Available | 628 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c2872 | Not Available | 1854 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c304 | All Organisms → cellular organisms → Bacteria | 1526 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c3078 | Not Available | 1523 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c31419 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis | 656 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c32204 | Not Available | 616 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c35155 | Not Available | 536 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c35227 | Not Available | 553 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c4037 | Not Available | 757 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c42071 | Not Available | 748 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c4250 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 670 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c45645 | Not Available | 542 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c47016 | Not Available | 583 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c4784 | All Organisms → Viruses → Predicted Viral | 1553 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c4875 | Not Available | 632 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c561 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus | 4307 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c5723 | Not Available | 523 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c61693 | Not Available | 504 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c6374 | Not Available | 665 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c6762 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 971 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c692 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 818 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c7134 | Not Available | 1504 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c8300 | All Organisms → cellular organisms → Archaea | 598 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c8643 | Not Available | 564 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c8938 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1256 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c91801 | Not Available | 629 | Open in IMG/M |
GB_4MN_4MetaGsffNew_c9744 | Not Available | 1247 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
GB_4MN_4MetaGsffNew_c11667 | GB_4MN_00242260 | F012162 | MLLTEEQTKYYLTDMIQFYGEKEHNTKGNFSWQRSEAEYRRKTFEDMKIVLFGDDYNEDQRAKFT |
GB_4MN_4MetaGsffNew_c12863 | GB_4MN_00782480 | F004643 | LNDLAKYYDKEFWEENGWVSCFECDIIFEDLEKLYEHQDLHLEEEKK |
GB_4MN_4MetaGsffNew_c13566 | GB_4MN_00455730 | F007004 | MKNLLIGISLLLFVGCANSNAYERPTVRIVGEAQMTKLPNGNYEVTPRWIKDRFNTENSMVKQLEDCRENK |
GB_4MN_4MetaGsffNew_c13670 | GB_4MN_00159940 | F016731 | LAISLILTSCAKHNTDDKVHNDLGSGDKSKLPVSLDLLIEHAEYCKAIYDSGGSQKDEVAFRSKTRKWNNNYCY |
GB_4MN_4MetaGsffNew_c14542 | GB_4MN_00191410 | F070217 | SAASMVISESQAKEAMGANFDPNCFSDSCAIAVGKSFNLSNVITFGIINVKKIADSTDVDTLLAEKDSIITATIIMKNFHIGTGQIASEMTFPFEGNTEKLLMTARRMVWTAVGVEPPPGRFPEDLIDNKVSLKKRILDFYYGTVVPWVQDNTEMTMIIGGILIISGGWLIFGGSGDGGGFDGPPDFPDDPPSMVQL |
GB_4MN_4MetaGsffNew_c14669 | GB_4MN_00072630 | F013899 | LSAAINSLFPDTCAIEEGERGQFELFQSGKSFMSAGYGKFFDLEDVKKKLTESGQDLFTN |
GB_4MN_4MetaGsffNew_c16331 | GB_4MN_00856340 | F062152 | MGAHYTNALVNHINKLNQQTIDRGAVGILTNDPSHWAGYGVYTIGDFQLYLEREHERNMYKSQLGE |
GB_4MN_4MetaGsffNew_c16353 | GB_4MN_00534160 | F099328 | MIQAGTGDVCLVFLSRRIFLGEDLRAAIDFQARRALFK |
GB_4MN_4MetaGsffNew_c1638 | GB_4MN_00569910 | F000615 | VRRNQNNIVSGLERPVNIMCRIRSFYECSDGTMGFAEMVVSYDEDIAGLIRHWGTGGRMVITEHVEMTV |
GB_4MN_4MetaGsffNew_c16891 | GB_4MN_01108770 | F045151 | MDKLVDAGVGHISVVDNLFDIEDMGDDIENMEDVEDTMSVIKSCVESLQIENKESLNLLMQNLYNEALTVETI |
GB_4MN_4MetaGsffNew_c19436 | GB_4MN_01285210 | F070560 | YYKHYLQNIMLMTNQTQQFKQLVSSAKPETQIPKTESMVTVSSLMSTADQVQFGKGLSSIFVDVPHHTSGESQIFSVRPQQLVPRSAVIQRDESSQLVGISAVSGG |
GB_4MN_4MetaGsffNew_c19494 | GB_4MN_00677580 | F015265 | MYPDHITKKPKLIERNAIVNLNNVGLPVFLNPMYDIIPMASPTKNPIRLSIFSNKNSNVA |
GB_4MN_4MetaGsffNew_c20889 | GB_4MN_00164830 | F047304 | MEIKPQYYGAVITGNMVTEKELKKLKKNGGFVKCPTRKAQGSKNARWGQVGK |
GB_4MN_4MetaGsffNew_c23495 | GB_4MN_00227390 | F021856 | MKDKKLIELFKDSAERLTKKAKNNSSAIHTMGGYGEIEHGRVCPFRSVPFEDCPLCILDSLDKL |
GB_4MN_4MetaGsffNew_c24111 | GB_4MN_00907240 | F005685 | MKKFNEYSSFEDKILGTLKRGPCDLMTLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKRTKKS |
GB_4MN_4MetaGsffNew_c26595 | GB_4MN_00168220 | F008561 | MKFDELIEHYERAIGFNSTVKGVPMSEENLELCREFVTDIHDCPRQDVRVMYRGPRTSYAHATLRKDALSFDVYHTPRYS |
GB_4MN_4MetaGsffNew_c27235 | GB_4MN_01070990 | F032311 | MKPNKPAFKFPSPNSDMMIHVFLRPMKGKKGMMAFNYQMEDK |
GB_4MN_4MetaGsffNew_c27988 | GB_4MN_01020120 | F036737 | MSVILVTVGLVFGAYLYQPLWFDSGPYHYVSSHEALADCEKAKLGNEHAVCANGELYMKDSSVSKTXKVETIEVNDFVFTIDKQDSTDTTMKSHWNE |
GB_4MN_4MetaGsffNew_c28617 | GB_4MN_00411890 | F003091 | MSTHPVKPITKPGEGNERQKYLSEEKYLEERYQISAGLRGPKRLEKESHEDFHLRRKAENGLLKEYRRGVWMTDGECTAANPPCRNCE |
GB_4MN_4MetaGsffNew_c2872 | GB_4MN_00045650 | F010876 | MEIDKTAVNYNSSPLYRFLLTDGKFKGVEFYFKNVELDHHNTPGSFDISYGYEIIGGNYRNDGWEEDMEHMNRIVNEKNKDQFEVEIGKILKNLLILNDPRVILHKGKDA |
GB_4MN_4MetaGsffNew_c304 | GB_4MN_00508490 | F001334 | MKFKEYLQLNADDSIEQVMDGEWILKSRTTWKATDDEDNKIEIHNDGHDPELNGESWSVHTNTFAPKAFAFFCKQFIKEAKPSEVTHARSRIYPQPSN |
GB_4MN_4MetaGsffNew_c304 | GB_4MN_00508500 | F003285 | MPDQESIHNLQTEIQTLKIKDEFRTKELDALMKKLSDTSSKLNELSENIGRLLAGQDLHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTEAKIDSDISLLNKKVDSLEKWRWITIGIATAIAWLLTNIIPKFLNN |
GB_4MN_4MetaGsffNew_c3078 | GB_4MN_00423670 | F010477 | MKIYVQIRYLVFIPYLIFIGMMGGNILAESIVVGIALAIYDFFFDNDG |
GB_4MN_4MetaGsffNew_c3078 | GB_4MN_00423680 | F026028 | MSICSNCYHRIKHKKAIEVGQLWNNEPFLGVVCSDKCKEEIEKKVADGTWMVMRSFPKITEEEDGLPTALTDKQFGTT |
GB_4MN_4MetaGsffNew_c3078 | GB_4MN_00423700 | F007055 | MTVIWIAIVMTWNPVIYTIDKEFSSEVNCWNYYDNGAGESEMRSRYGTQVLDHQDNKPDKDYMKKHRPAHREYPTRIYKNHGGWMVWLTCDIKEGMKDYD |
GB_4MN_4MetaGsffNew_c31419 | GB_4MN_01187360 | F037503 | MHLGAASRLIVIEVELLIGCGGFTAYQILTNSECYNIYSAVRAWVLRSMSERERTQTIS |
GB_4MN_4MetaGsffNew_c32204 | GB_4MN_00258410 | F041256 | MNLNEYLIENDRYIGDVVLLFSVGTALDKISGDTFPMLLGGKIGVDEPMNLMEMDFNDDSWEWYNALGFGDKGIVDEVMEDLKNESEYKSKQV |
GB_4MN_4MetaGsffNew_c35155 | GB_4MN_00662270 | F016619 | FILFMAITIVHNADHKSLTGKTLSIQSELTSKLKTTIVDVTYAAGDNYATNGNTVDLSLGSRINTVIGAEILHCNKGLLLQYAPAAAGAAATGKIKAFGHTPTSATATVVALEELDNADTAVNSMTIRIRVIGF |
GB_4MN_4MetaGsffNew_c35227 | GB_4MN_00805750 | F005608 | IEVLEEGELIFGSPTAGKYFVRRYEDGEEMGGGFFKTKKEALTHAREYKKSE |
GB_4MN_4MetaGsffNew_c4037 | GB_4MN_00601200 | F005399 | MKTAIELDVFQEMKLDENSGEIVMRPMAEMMDAPLDYIDEEDEPDWASLLKVLTETMIDPYTVSASTEVPNEKDYHMMVAASEDLFSVANDFARKVEELHTIDPKEYQERMKRFEQGTFWPSENHGSVEEE |
GB_4MN_4MetaGsffNew_c42071 | GB_4MN_00069950 | F015261 | MPVNIVWEDGDATISILCDGCDKEYEILSKDTDGLEMCPFCGHYLEVDSESGEVNESEEDSWD |
GB_4MN_4MetaGsffNew_c4250 | GB_4MN_00536590 | F017326 | MIMNDYEKVKIEINESVTSDNFKEHLRKNYHNSYDEYLDDTRHIDLDVYYEKNSIPINQLVPKGMTIKEYFGKEQRLLRGENISYVKFDD |
GB_4MN_4MetaGsffNew_c45645 | GB_4MN_00560680 | F047304 | MSEIKPQYYGAVITNNMVSDKDIKRLKKEGGFIKCPTRXAKGSKNARWGQCK |
GB_4MN_4MetaGsffNew_c47016 | GB_4MN_00448530 | F028526 | LKLVKKVSKPDYTMHFMEDRYGRKAMFYNYKGVEIKKDECCILKATIAEHRRSKFDNGKPLTYLNRVTVHRNLGTKENPKIVFGEEGX |
GB_4MN_4MetaGsffNew_c4784 | GB_4MN_00137850 | F005429 | MRQETVDEYLKRGGTIEQIPEVLDTLGSWWGYQARYQTESLKDGTQQVVSWKSVQPDERFDTEDDDRKYWNKLNKRCDQLLKKMKVK |
GB_4MN_4MetaGsffNew_c4875 | GB_4MN_00741490 | F021857 | MTIIDKKEVKIKVRSRFCAICDSQFRWQCKCPNNKVMVEQVNRSFKAGKRYRGKRALEYCNTLEEELKQDENI |
GB_4MN_4MetaGsffNew_c561 | GB_4MN_01080230 | F055778 | MFNNVDFPEPELPTIKTTSPCSIEKDTSSRALTLLSPSP |
GB_4MN_4MetaGsffNew_c5723 | GB_4MN_00178650 | F019388 | SLKGTVMRTEQNPYLVETKKGQILKFSRIDADNEAVSKQLDGDDVEVYHDGKLQYKLHGIEQGKLF |
GB_4MN_4MetaGsffNew_c61693 | GB_4MN_00563410 | F007004 | LFVGCANSNAYERPTVRIVGEAQMTKLPNGNYEVTPRWIKDRFNAENSMVKQLEDCRENK |
GB_4MN_4MetaGsffNew_c6374 | GB_4MN_00524230 | F035798 | NADLYEISKEEKLAHDTALISEAGDDMCSIPLEKLKSKIMRDRHKKMCVTPKKVNTKSIWSKAAQKAAGGRHKLYNSLEEGPDDNLVVLIRDITSQMIGAIKKKDQKN |
GB_4MN_4MetaGsffNew_c6762 | GB_4MN_00273470 | F058538 | MYSQYETTVINRRRLHDLLAWVNQKYYLEYEVVQENRDVFYVIFHDLSIKQTVSIQHQIKGSSQPEHFDLH |
GB_4MN_4MetaGsffNew_c692 | GB_4MN_00869040 | F084730 | VEPVFTVGYFSYLNCIASGVYLYDLGNRIYGYGTPKRALIFFNSFYK |
GB_4MN_4MetaGsffNew_c7134 | GB_4MN_01189350 | F021857 | MTIIDKKEIKIKVRSRFCAICDSQFRWQCKCPNNKVMAKQVKKSFHDGKRYRGKRALEYCYETEKDEKL |
GB_4MN_4MetaGsffNew_c8300 | GB_4MN_00526900 | F006959 | MYYETQVVFTEEIDTKNGVKEKKVRRNYLIECDSVSVAEAKVTEFLKDSAFFFEVKVDKG |
GB_4MN_4MetaGsffNew_c8643 | GB_4MN_01073500 | F072442 | MKTFKEFFQLGVTKPSKFDVQNYLNSLGTRLMQLPDIKKKIIKHFKNIKNLKLDSFGKKVLSFEEYIPEEITKRDIK |
GB_4MN_4MetaGsffNew_c8938 | GB_4MN_00032020 | F006640 | MIELLIFGLVLLSVICLWLLIEGRKSPKFLVWFIPLVLILVSSTYVTYTSILGYPRIAKPKEGLYLKHYIDEPN |
GB_4MN_4MetaGsffNew_c91801 | GB_4MN_01078450 | F027016 | MLAEVKNLIDDINEPKPTHLRQFIHPQWGTILGSEKDIRIAALKDEVEIWEQRVEDDPDSIPYLGYIRDTLKSRIEELKGH |
GB_4MN_4MetaGsffNew_c9744 | GB_4MN_00593430 | F016675 | MKNFEVDYETTLPPWHIGHEKIEAEDLDTVKRMFHSKHEAARLRKITEVLFVAPL |
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