NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025431

3300025431: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_100m_DNA (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025431 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046785 | Gp0091332 | Ga0209449
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_100m_DNA (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size208687104
Sequencing Scaffolds38
Novel Protein Genes41
Associated Families40

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → environmental samples → uncultured virus1
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia → Candidatus Brocadia sinica1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium1
Not Available13
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus adriaticus1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → Phycisphaeraceae → Phycisphaera → unclassified Phycisphaera → Phycisphaera sp. TMED1511
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomecoastal inletsea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001156Metagenome / Metatranscriptome763Y
F001887Metagenome / Metatranscriptome622Y
F002902Metagenome / Metatranscriptome522Y
F005546Metagenome / Metatranscriptome397Y
F007087Metagenome / Metatranscriptome358N
F008648Metagenome330Y
F011736Metagenome / Metatranscriptome287N
F014445Metagenome / Metatranscriptome263Y
F015265Metagenome / Metatranscriptome256Y
F016736Metagenome / Metatranscriptome245Y
F022202Metagenome / Metatranscriptome215N
F028657Metagenome / Metatranscriptome191Y
F033867Metagenome176Y
F042172Metagenome158Y
F043089Metagenome / Metatranscriptome157N
F044540Metagenome / Metatranscriptome154Y
F046847Metagenome / Metatranscriptome150N
F049290Metagenome147N
F054344Metagenome140Y
F058538Metagenome / Metatranscriptome135N
F059474Metagenome / Metatranscriptome134Y
F060599Metagenome132N
F061392Metagenome / Metatranscriptome132N
F061863Metagenome / Metatranscriptome131Y
F062497Metagenome130N
F063767Metagenome129N
F066454Metagenome / Metatranscriptome126N
F070212Metagenome123Y
F071971Metagenome121N
F078263Metagenome / Metatranscriptome116N
F080488Metagenome115N
F083345Metagenome113N
F087322Metagenome110Y
F093982Metagenome / Metatranscriptome106N
F096688Metagenome / Metatranscriptome104N
F098166Metagenome / Metatranscriptome104N
F099328Metagenome / Metatranscriptome103Y
F102126Metagenome / Metatranscriptome102N
F105334Metagenome / Metatranscriptome100Y
F106105Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209449_1001779All Organisms → Viruses → environmental samples → uncultured virus10147Open in IMG/M
Ga0209449_1003197All Organisms → cellular organisms → Bacteria → Proteobacteria6449Open in IMG/M
Ga0209449_1004566All Organisms → Viruses → Predicted Viral4921Open in IMG/M
Ga0209449_1006358All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3776Open in IMG/M
Ga0209449_1008463All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique3009Open in IMG/M
Ga0209449_1008536All Organisms → cellular organisms → Bacteria → Proteobacteria2990Open in IMG/M
Ga0209449_1009621All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis2727Open in IMG/M
Ga0209449_1015983All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1835Open in IMG/M
Ga0209449_1016025All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia → Candidatus Brocadia sinica1831Open in IMG/M
Ga0209449_1016074All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium1827Open in IMG/M
Ga0209449_1016402Not Available1800Open in IMG/M
Ga0209449_1025221All Organisms → Viruses → Predicted Viral1282Open in IMG/M
Ga0209449_1029112All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade1143Open in IMG/M
Ga0209449_1029242All Organisms → Viruses → Predicted Viral1139Open in IMG/M
Ga0209449_1031176Not Available1085Open in IMG/M
Ga0209449_1031218Not Available1084Open in IMG/M
Ga0209449_1033111All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801035Open in IMG/M
Ga0209449_1051104All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis744Open in IMG/M
Ga0209449_1051596All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium739Open in IMG/M
Ga0209449_1053996All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon714Open in IMG/M
Ga0209449_1058658Not Available672Open in IMG/M
Ga0209449_1059246All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus adriaticus667Open in IMG/M
Ga0209449_1059854All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → Phycisphaeraceae → Phycisphaera → unclassified Phycisphaera → Phycisphaera sp. TMED151662Open in IMG/M
Ga0209449_1059867All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter662Open in IMG/M
Ga0209449_1060339Not Available658Open in IMG/M
Ga0209449_1062584Not Available641Open in IMG/M
Ga0209449_1062894Not Available639Open in IMG/M
Ga0209449_1067349All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium607Open in IMG/M
Ga0209449_1067856Not Available604Open in IMG/M
Ga0209449_1067908Not Available603Open in IMG/M
Ga0209449_1069578All Organisms → cellular organisms → Bacteria593Open in IMG/M
Ga0209449_1074918All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium561Open in IMG/M
Ga0209449_1075176All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium560Open in IMG/M
Ga0209449_1077492Not Available548Open in IMG/M
Ga0209449_1079133Not Available539Open in IMG/M
Ga0209449_1083947All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon516Open in IMG/M
Ga0209449_1085917Not Available508Open in IMG/M
Ga0209449_1087816Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209449_1001779Ga0209449_100177916F102126MGSKGKDVQLGKDAERFVNDPLYKTAFAETKEELIKMLLQTKISEETERDRIYITIKALGLIDEHIQSVINTGKLAEGQQEFYSEHY
Ga0209449_1003197Ga0209449_10031978F011736MENKNIFLMIFFYCTINLSYAKDLDMNSKMTQGDNKQFENIYQDWEVDKFENIVRYSTHGRVVHGHRFGWIKKAGNCDFDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL
Ga0209449_1004566Ga0209449_10045664F066454MSIRFDVLILINSGVTDRSEIVERLGINIRSVSNCVRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDDVTRSELINLWNELTDYYLPYEGDKEFTGSNDFFSL
Ga0209449_1006358Ga0209449_10063586F106105MGALPYDDKHENEKVLVDCDVCSKRFLLYQDRVPTCTNCLTDKTIRKNRSKQGTPIAFLFLD
Ga0209449_1008463Ga0209449_10084631F044540MIKGATETNAEADKLHHGVIEEFRATILTGNNCTSVKVKMNAKKKSIHPNIIQNIPATINPGIEFGRTTLKNAX
Ga0209449_1008536Ga0209449_10085361F043089MTRLHENYLLWLLREIQKSDSLWKDELGYAVRLIQQT
Ga0209449_1009621Ga0209449_10096211F015265YPDHMTKNPKLIDANAIVNLNNVGLPVFLNPIYAIIPMASPTKNPTRFSIFSNKNSNGV
Ga0209449_1015983Ga0209449_10159834F087322LQALRFGLVLTALFVLRIIQAGTGDACLVFFNRRIFRGEDLRAAIEFQARRALFK
Ga0209449_1016025Ga0209449_10160252F061392VVVKRLSMICAFFTVGIFLSLQTFAGESDKPDPTFRLNATLYPIDGGQLYIGDVNKDKKTFRLHLRHIGKDGKWVYYYASASAPVNEDGDVEADSAVASIEYPQYIASVIGNTFRKARVRVLFSHRGDGEGFFKEAGQVIFQECATKTFEAKNWNCTGWEYLGTLPGFQ
Ga0209449_1016074Ga0209449_10160741F058538MYSQYETTVINRRRLHDLLTWVNRKYHLEYEVVQENRDVFYVIFHDLNIKQTIAIQKQIKGSSQPEHFDMH
Ga0209449_1016402Ga0209449_10164021F061863MKIDTNLLIQTSIAACLVIFGVVTKNSFEQLGFPNHPIGKPLGMGMFIMGWIYTAYIFSINKPNKLAFILPSIGIVIAVMMMKQYMVKKQTPPMVFPVIFALSWIILGLNAGNHLSGNQKYLGLFASFLVLLSMMQILPYQRTHNIVDGPGQPLFVIAWGILIMLNSNR
Ga0209449_1025221Ga0209449_10252211F060599MNMEWDVVISKSIEDQNEDLGIFNWNFKSSNAHLGLNTLVSEKVKDREWALRVNSSLLHGIEDGSEVWAQEIFLIPKTNEKKSYSDKTKIFYSKSLQTIGDQIGLIELVNNEIKEGIWDIKHNPLCFNIHNREPCWHIRLHKISNAEEE
Ga0209449_1025738Ga0209449_10257381F078263MELLHDSDGLEGSLDCQLKRLEEKIETSQPVALMKDLHRIDDEIKHFKDVEITTNTVVSSVKEHEETIKKLEERTRDKFAEMTSQNKATEAMVTDKHNDL
Ga0209449_1029112Ga0209449_10291122F022202MKNKDQKILQNWIDTLQGISVRGMDSKSRLEARLLKKAWLEESKKIENKIPDQDPAFYQNIKEALKKKKDKTASKNLWTSFFENKFKAFLVVILGTGVVYASKKTYDGLVSVAEELNHVVLAKDTTKTKAENEIEENGFWDEHFDRHGGFTGFWS
Ga0209449_1029242Ga0209449_10292422F059474MAFKAIDRNDTKEFVSSEDPAIDIANSDIEAYKESHNIKHLSFKDGESPTVFHMGTITFMKFAEIKDKHISFDLGSDGQEINTNLFGLTADSLRHSLKKADNLPFPIKIERGRLSDTTMDKLARLGIVEELGNIALNLNGFGDDDEKK
Ga0209449_1031176Ga0209449_10311762F002902MADVTNNAKATAGNGIGSRTRIINLAKTDMTQAELDAALLYLATGDVAGTNDAHSIAGVSVLTESGVFTTGTTDAVQVAIQGTGVATMASDFGTGSTGVTATLIAEFID
Ga0209449_1031218Ga0209449_10312183F098166MNILVSKDEEQSIYTTAMRFTLSDGDMLLTATTEEIDKVGAWLGKNGLTGVYTDIEEDDFIECNDFMFTSSDIDINSDNHLTFIRLLK
Ga0209449_1033111Ga0209449_10331111F007087EGEESNYRNDVLENTSKASLTLHVRDDSIVIDSMTYKNKTFDYGAIKGLSKYVKEDAQIVLETTQVSNECDTALLNVKLNRSNGMIESTAKRIGACDGSSFTTSTKFKGKCK
Ga0209449_1051104Ga0209449_10511043F015265AMYPAHITKNPKLIEKNAIVNLNNVGLPVFLNPINDITPMMSPIKNPTRLSIFSNKNSNC
Ga0209449_1051596Ga0209449_10515963F083345VLPYEDVPDEIKDKAKGNTWEVSDEDADALLQIGAVSMIKRGLKVAEEEDYYAKLQKLADTDEWESDDDKEGM
Ga0209449_1053996Ga0209449_10539961F093982INKSKNRTLIKYFKEYEKARLKLSQAGSMLTRAFNLEK
Ga0209449_1058658Ga0209449_10586583F070212MKPIQKILTDLVQHIENEEPIHKHEYSYDRMDWVKKSLSKQDDLYSVGIENLRVLVYQLSLFNKHIL
Ga0209449_1059246Ga0209449_10592462F071971LITIAVCYNAESTINAINNTAKYGLENLNKVHAAFSMGLNMTQTDNPIINAPDAIAVHRYTSLTISSPVSVVMKNGAIENNTITT
Ga0209449_1059854Ga0209449_10598542F028657QKLLIERNKADQENADADRKSSTASADAAAKRVGNDPFAKLTRRIFVLSMVALGAWAMMGSLTGLDIVVPVTQETGFNFLGLIDTKNTVTEYLRFENAIVHFEWLKISILAAGSFYLGKS
Ga0209449_1059867Ga0209449_10598671F014445QELLREKNLVEEKLEEASSSLKDNFFLNLNCYNKLCLRLMH
Ga0209449_1060339Ga0209449_10603391F096688MRIIKGLAVVGCASIMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDPSEPFVQCHVAVNEAYNVAWNKWRWQKIWSRAIEIISARTLQLLG
Ga0209449_1062584Ga0209449_10625842F063767GDDRPVFCKLYPLVENKSNRLVMNNWGYLHCPKSQHYELDKIVEGKYHYKLKPKVRKHNKREELILDDEIDNVVHQIWLQSKDSIIQRYGQEYYNRIKNEMKQTIKHEFF
Ga0209449_1062894Ga0209449_10628941F046847MPDVDKTVEVETPKTENEVVLSQSKLDKLIDKGFSKGANRAKTELAEQLGVDSIEQARELINAKRENDEANKSDLDKAAELIQTLNSTIEGLESNNKNMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFIDQLKGDKPYLFSGGDVQPKRVDATSNRASLDVGERVKSAKTMA
Ga0209449_1067349Ga0209449_10673492F062497MIKMKELLSLNEDVEKDIKRNIDELGQLDREIEELQKKLKPLRKQYGELVDNVLPVLENLGKEQYKTQNYIIRIIRKGYERQSFQYKEGFNKALDKVNSNIKQILREILEDTKKMVKVSASFQVKPIEIKESSFTDWIKKYTRKVVRKIIPYMKVIVKTNNDLRKMI
Ga0209449_1067856Ga0209449_10678561F008648EVRGTSLSGLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDGDGVRNIAKLQGKKKQISAFFSMFSRYMEVGVATQGGVHSVLEMDADVLLSAKGDVMSHLDQNGRRWTSISDLKETSRWTKFTAVEKDLEKMFDALVKKYLKRGEFQENATVWELWRMAERKVDKKTMSMIIKDYMDGMEKVIKKNIDTFENA
Ga0209449_1067908Ga0209449_10679081F105334MTKVAFHRAGIPFFDRDTFLTPFDKIFDQMIGSQFP
Ga0209449_1069578Ga0209449_10695781F042172NNDKKSSKTFFIKELKIVDLEIKARVSSIKKDFLNKKIPLIVIKNIGSETTGASPEFILESVILKIDDNLETVFDFKSLKTDIRNNVNKIIDKLKGVKKDNSGKEKIDHKKIINNLKDLF
Ga0209449_1070729Ga0209449_10707291F049290QADKKYKFTSEDCVMVMFTTFNRMSYVDNNNFYIYNLGDIIDDNLKDHPMGKTYNFATAVYDSCIVIQSIKSILDSKNVKYEFLQSMKHNFGHGNFKMRGDVKQELDYCLNLFKYPVMENWCYENYDFEKEKITWQDNGSRDGHPPMKHNFDYVKEFFPQYITDKVIEYYNINQEKFTDESEMKQENIYRGLKKE
Ga0209449_1074918Ga0209449_10749182F016736VKFFLLKVLTLFSIGVYLIDQLGPTYKQLQTGVREKEKAETKGESDTKSRQ
Ga0209449_1075176Ga0209449_10751762F054344IDKSGNDNHAKIHGALQKEKELRIGSLALIPNRRDGKFTCLEHEENGWSQTKFTHWETRENQLRFFNKVRRGLSSIKEDGLSSLKYEISHNEEFLDKHEFISVI
Ga0209449_1077492Ga0209449_10774921F033867GNMEYMEQYGIHIQTATKIIADYIASEDKMIAEGKMPTVNHLYAFLDRMAETFHDAHKDVIKRIGIKELIKDEFLYLEKKDDDS
Ga0209449_1079133Ga0209449_10791331F005546CYYLIKGTGTITLSASSEENDLTLTGKGKYGLRPNQLKYGNDKIFKLTTDNQVKSYLLVTEFRRN
Ga0209449_1083947Ga0209449_10839471F001887MISLKSMLKTVKEARIAKPRKGRETPLDSKVQIPGFGVMTRKQMQGSIQRYLKEVTNYIKKGDAEKAYNTLYKREVLKGFLET
Ga0209449_1084509Ga0209449_10845091F099328LVLTALLVLRIIQAGTADACFVFFNNRIFLGEDLRAAIVCQ
Ga0209449_1085917Ga0209449_10859172F001156EILERIVGTKSKATLAEAFKVAFAEKYDVKRDEIKQGIVDKVYNNEKVDK
Ga0209449_1087816Ga0209449_10878162F080488MEYKEWYSVGVEQGYLRKYSTNLVDGLASNIQILEKAFTQSVQDKLGKGGTEKMEKYGHQLYWLMIQRDMMDNVRYWKETDV

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