NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025468

3300025468: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_120m (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025468 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046785 | Gp0111040 | Ga0209685
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_120m (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size237760051
Sequencing Scaffolds48
Novel Protein Genes50
Associated Families44

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available36
All Organisms → cellular organisms → Archaea2
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium Athens0714_161
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium BACL14 MAG-120920-bin581
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → environmental samples → uncultured marine thaumarchaeote AD1000_06_F061

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomecoastal inletsea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)N/ADepth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008781Metagenome / Metatranscriptome328Y
F014267Metagenome / Metatranscriptome264Y
F015265Metagenome / Metatranscriptome256Y
F026538Metagenome197Y
F027418Metagenome194Y
F029271Metagenome / Metatranscriptome189N
F031925Metagenome181N
F032448Metagenome / Metatranscriptome180N
F033867Metagenome176Y
F039110Metagenome / Metatranscriptome164Y
F040567Metagenome / Metatranscriptome161Y
F040645Metagenome / Metatranscriptome161N
F044540Metagenome / Metatranscriptome154Y
F048788Metagenome147Y
F051972Metagenome143N
F058066Metagenome135Y
F061863Metagenome / Metatranscriptome131Y
F063080Metagenome / Metatranscriptome130N
F063455Metagenome129N
F066128Metagenome / Metatranscriptome127Y
F066454Metagenome / Metatranscriptome126N
F067831Metagenome125N
F068482Metagenome124N
F070212Metagenome123Y
F072834Metagenome / Metatranscriptome121N
F073088Metagenome120N
F074479Metagenome119Y
F077771Metagenome / Metatranscriptome117N
F078263Metagenome / Metatranscriptome116N
F078399Metagenome / Metatranscriptome116Y
F078538Metagenome / Metatranscriptome116N
F080488Metagenome115N
F083253Metagenome113Y
F083344Metagenome / Metatranscriptome113N
F083345Metagenome113N
F084730Metagenome / Metatranscriptome112Y
F084823Metagenome / Metatranscriptome112N
F085549Metagenome111N
F093660Metagenome106N
F096496Metagenome104N
F096498Metagenome / Metatranscriptome104N
F098166Metagenome / Metatranscriptome104N
F099328Metagenome / Metatranscriptome103Y
F106105Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209685_1002431Not Available6978Open in IMG/M
Ga0209685_1002745Not Available6323Open in IMG/M
Ga0209685_1011456All Organisms → cellular organisms → Archaea2227Open in IMG/M
Ga0209685_1011894All Organisms → Viruses → Predicted Viral2171Open in IMG/M
Ga0209685_1021660Not Available1464Open in IMG/M
Ga0209685_1022973Not Available1410Open in IMG/M
Ga0209685_1028032Not Available1236Open in IMG/M
Ga0209685_1032711All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua1113Open in IMG/M
Ga0209685_1034085All Organisms → cellular organisms → Bacteria1082Open in IMG/M
Ga0209685_1034666All Organisms → cellular organisms → Archaea1070Open in IMG/M
Ga0209685_1034765All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium Athens0714_161067Open in IMG/M
Ga0209685_1035547Not Available1051Open in IMG/M
Ga0209685_1037907Not Available1008Open in IMG/M
Ga0209685_1040396Not Available968Open in IMG/M
Ga0209685_1052124Not Available821Open in IMG/M
Ga0209685_1053971All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon802Open in IMG/M
Ga0209685_1054042Not Available801Open in IMG/M
Ga0209685_1054209All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon799Open in IMG/M
Ga0209685_1054710Not Available794Open in IMG/M
Ga0209685_1057241All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus771Open in IMG/M
Ga0209685_1057944Not Available764Open in IMG/M
Ga0209685_1059971Not Available747Open in IMG/M
Ga0209685_1062066Not Available731Open in IMG/M
Ga0209685_1063346Not Available721Open in IMG/M
Ga0209685_1064243Not Available714Open in IMG/M
Ga0209685_1065239Not Available707Open in IMG/M
Ga0209685_1065534Not Available705Open in IMG/M
Ga0209685_1067778Not Available690Open in IMG/M
Ga0209685_1070532Not Available673Open in IMG/M
Ga0209685_1070837Not Available671Open in IMG/M
Ga0209685_1071466Not Available666Open in IMG/M
Ga0209685_1075961Not Available641Open in IMG/M
Ga0209685_1079013Not Available625Open in IMG/M
Ga0209685_1080421Not Available618Open in IMG/M
Ga0209685_1083195Not Available604Open in IMG/M
Ga0209685_1084886Not Available596Open in IMG/M
Ga0209685_1086623Not Available588Open in IMG/M
Ga0209685_1090491Not Available571Open in IMG/M
Ga0209685_1090516All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus570Open in IMG/M
Ga0209685_1090898Not Available569Open in IMG/M
Ga0209685_1091533Not Available566Open in IMG/M
Ga0209685_1091539Not Available566Open in IMG/M
Ga0209685_1093800All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium BACL14 MAG-120920-bin58557Open in IMG/M
Ga0209685_1094817Not Available553Open in IMG/M
Ga0209685_1098788All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → environmental samples → uncultured marine thaumarchaeote AD1000_06_F06538Open in IMG/M
Ga0209685_1099044Not Available538Open in IMG/M
Ga0209685_1101605Not Available529Open in IMG/M
Ga0209685_1104871Not Available518Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209685_1002431Ga0209685_10024317F083345WEVSDEDADALLQIGAVSMIKKGLKVAEEEDYYAKLQRLADTGEWESDEDKEGM
Ga0209685_1002745Ga0209685_100274511F096498MGMYDEINVDIKCPKCGSNEMNWQSKDYMCGLDMIDPDKVQEFYTHCDKCDTFTTYRRGAENDDAYTKCRAEPYSLDEVEKMGFKYKCDNGG
Ga0209685_1011456Ga0209685_10114562F031925MRLNLEINRIQTRNLFFLIQYPKLNRNFVILIMTDQKTDETTLQFVAAFLKSQKGKYEDTQKHLDKVLGSPDHQNNELVWFFKACMFQKMGKIEQSHDCLKMALMSFDYPPNITPPTTEFISSNSIQYCAPKLDYIV
Ga0209685_1011894Ga0209685_10118942F008781MSITNTWSVTDMQHTDADGGVFLVYWSMVAQSDGTPSFTASDGGKLR
Ga0209685_1021660Ga0209685_10216604F106105MGALPYDEKHENEKLLVDCDVCSMRFQLYQDRVPTCTNCLTDKTIRKNRSKQGTPIAFLFLD
Ga0209685_1022873Ga0209685_10228733F099328AGTGDACLVFFNRRIFRGEDLRAAIEFQARRALFK
Ga0209685_1022973Ga0209685_10229733F066454VTDRSEIMEKLGVNIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDDVTRSELINLWNELTDYYLPYEGDKEFTGSNDFFSL
Ga0209685_1028032Ga0209685_10280321F026538MYKLNENSIQRLSDNASVPIADGNRDYQQFLQDVKVNGLTIVEGADVI
Ga0209685_1032711Ga0209685_10327113F078263IETSQPVALMKDLHRIDDEIKHFKDVEITTNTVVSSVKEHEETIKKLEERTRDKFAEMTSQNKATEAMVADKHNDLISKINGISSRVDNLEEKIELAVRELKSEARKTSFLRKLLWLD
Ga0209685_1034085Ga0209685_10340851F066128IDVSVEEKKAETSIKPKSRTLSQKVESDSNQLWFG
Ga0209685_1034666Ga0209685_10346661F096496VNKKLVPTNIERNAILTKQQKIHLKSEKVDPKILNNIRRTLEKKLDGLTEDLDIIKNSKSLENWRLLQSEKFQELHKVLESTVMNFKPFYPFAVKTFSKKVGTKKFRMFWMDLSEESNFSTERIFEPSFALRKIKHYFNDDSFELLCWAVENNLIPCYKNNAKREEDFELAKNDELYFLKLQNTRTFTNEKKVQLKPEIEKERLENNMMWNYINKQYDMLNKKLYKKYGVKVIPKIETFDVFTLS
Ga0209685_1034765Ga0209685_10347651F084823MKENTVRKDDKVTNLSEYKGFQALQKSVGGLATINDEKLAIIAE
Ga0209685_1035547Ga0209685_10355472F067831MKLNYFSFNNYSSSIVTQSLQAAAPFLTGSNPEYWTGKGNNHGVIAGYDWVPSSGSLKLLELNTNIQTPPETNFLDSAVTWWKANNYDTIVLVTRNEEGTVIPSLNLVGDITASLDIDGFTSSIYVQPSYPTPVPDFDVPNTTFVLRFGFDSASPIDYLASDKREFRNFASSSGIESLMPRKMADLPDGFSNGVGVPDVLIKDPTVDYQTLLMNSFQFYDITDDNKNYLLSQSYCEEFILPDLNYNGAYYSEVRGIMMLTPQENIFLQPRNPITADVNVFQTQLPCYILSADSGSYTTTTITRKGAMSGSQVLMSD
Ga0209685_1037907Ga0209685_10379071F048788MENNYWIVDEWLIFKPTFNEELTYYYDIINKYKKIMFSNYDNTLIAIETNNQYKYEYHNKYYDN
Ga0209685_1040396Ga0209685_10403963F033867LGNMEYMEQYGIHIQTATKIIADYIAGEDKMIAEGKMPTVNHLYAFLDRMAETFHDAHKDVMNRIGIKELIKDEFLYLEDKV
Ga0209685_1042501Ga0209685_10425011F027418HLTFSREFNQKIFIPLNVKSLTMIYCDNQYVIDNLHNNIEELTIYETNLNLDNLPNSIKKLTIYNYKKVLNNLPNSIKYLELINYKLKIKKIPKNLKIIKCHNHYKYIDDFKNYEVIYY
Ga0209685_1052124Ga0209685_10521242F044540MIKGATETNAEADKLHHGVIEEFRATILTGNNCTSVKVKMNAKKKSIHPNIIQNIPATIN
Ga0209685_1053971Ga0209685_10539712F085549MVYRLSLATKPKWNTLRKKFVMPDEDGNYPSGSIYTAQIAEGSITIREVGNVPIAATYDEEGEILTEASFNEDFAVDIVSDYELPVSK
Ga0209685_1054042Ga0209685_10540421F080488MEYKEWYSVGVEKGYLRKYTTRLVDGLASNIKMFQKAFTPSVKDKIGKSTTDTMEKYGHQLYWLMIQRDMMDSEKYWEETDDV
Ga0209685_1054209Ga0209685_10542092F072834MKELEEWVGNNHTELADWAKDARSLTEEFKAGDLSEDEYLELMEDLKRSKKISDAADALAVRSRAVELIDNIITSAGVIL
Ga0209685_1054710Ga0209685_10547102F078399MENNYWIVNDWLIFKPEFNEPSDDYYDIINQYKKIMFSN
Ga0209685_1057241Ga0209685_10572411F015265ITKSSNMYPDHMTKNPTLIARNAIVNLNNVGLPVFLNPMYDIIPMASPTKKPTRLSIFSNKNSNGV
Ga0209685_1057944Ga0209685_10579441F070212MKPIQKILTDLVQHIENEEPIHKHEYSYDRMDWVKKNLSKQDDLYDIGLENLRVLVYQLSLFNKHILTDETKYGLLPERKDKKLME
Ga0209685_1059971Ga0209685_10599711F014267ANPTGSADIAFAIQNIVIHINNIHKVDGVNFVKPSDILAKLFEAIPNEIPTAKNKYPNRGFIF
Ga0209685_1062066Ga0209685_10620663F098166GEYTMNILVSKDEEQSIYTTAMRFTMADGDMLLTATTAEIDRLGEWLGKNGLTGVYTDIEEDDFIECNDFMFTNGDIDINSDNHLTFIRLLK
Ga0209685_1063346Ga0209685_10633462F073088MQVNQQIHLIQIQFDQFVFLNNTYYLKPEFQSTLKNVIENELNIFIDFKVMQTTVGVKTIKFRKKDKIHKI
Ga0209685_1064243Ga0209685_10642431F083253PFIMTYFEVSKHQAAEYYDLMSKEELILLVKKYGKSDKEIKKMKIR
Ga0209685_1065239Ga0209685_10652391F051972MVSPIYYFTRSGCAWCTRMQPSIEHINKTLNDEQKIQILNVDDKKSRVIYDTILTSNKLRAITPMLYNSNIGTFLLGYQDKRNVEQFLKANPLKERKPLKPIPTFDIQNSSKKDFDNWKKSVILWYGENQKDLPTNVISQERMIDMVYTQFMAYRTKPLTIEDRLSKLEEQSHEPQNYREECEMMNKELKILKLQIKKL
Ga0209685_1065534Ga0209685_10655341F008781MAITNTWSVTDMQHTDADGGVFLVYWSMVAQSDGTPSFTA
Ga0209685_1067778Ga0209685_10677781F032448LFLVGCGTKGELYIPEEKYPQSQLYKYKDEIFTDQKQLA
Ga0209685_1070532Ga0209685_10705321F033867DMVNTGRIGLGNMEYMEQYGIHIQTATKIIADYIAGEDKMIAEGKMPTVNHLYAFLDRMAETFHDAHKDVMKRIGIKELIKDEFLYLEDK
Ga0209685_1070837Ga0209685_10708371F083344MITTIKFTSDDLTMLRGVMACTAKKSVRRHALNGFHINKDHVVGTDGSRIAKFNTPHFDGELPERGVIIPSIKIPFAVHTVIITIEDDTVTADKYSKQGKTTEVYQIIDANYPLYRNVLADADRGKTAVDKIAFNPMLISEVAKATKTNIIQIEFTFGGELSLIYVNIPELPEFTFGIMPARY
Ga0209685_1071466Ga0209685_10714661F068482LQAGHEQLNLKMYFLVQNTLGGPINLSVWRHQKANDICRTNFMDSISQLTLDEETRNSINCLHYRDRYFLDGDIPFKDQEIKNDDIVVFTDQTDEEIIIGVIEASSDFQK
Ga0209685_1075961Ga0209685_10759612F039110MSKVAKKAVAKKATKHQLIALIDGSHGIDGGIYTFKTGDVITLSKKSHYDSMKELVTRFSEV
Ga0209685_1079013Ga0209685_10790131F093660GWSPVAELEFDFDADGWWHGSYFFNSHKEISEFWQSELGINAYAEEQAARQREIDSLINAHICEVSEGMMSLSHVG
Ga0209685_1080421Ga0209685_10804211F040645MKRVGIRSKIILLTLLILGGGFFVAPEILEEVAEVRYRRTLEDGRANLAERLEKDYKKLNLRNTPRLGDYFVFIYDKQSGKLMREYSFFPPRLIDDYNLAKNQFAINENNLNFIKTESIDKKVSIIVGFSESTSRNAVDGLERFFVLSYLFASIFVVLGILISTEIALRPVRRSIKKISKFEPLSKMEKLDDVKSND
Ga0209685_1083195Ga0209685_10831951F078538NNYIDKMERMHKCDVNQTEPIWPFFDGNNYFDPTEEENI
Ga0209685_1084886Ga0209685_10848861F026538MYKLNENSIQRLSDGASIPQAEGNRDYQQFLQDVKVNGLTIVEGA
Ga0209685_1086623Ga0209685_10866231F083344MNKTIIEFTSDDLIMLRGVMACAAKNSVRYALNGFHINSEHVVGTDGSRIAKFNTPHFDGELLENGIIIPSIKIPFSVHTVAIAIDNNKITVDKHLKHNKTTEVYQTIDAKYPLYRKVLADRGKTALDKIAFNPMLISEVAKAIKATITQLEFTSGGELSLIYVNIPNLPEFIFSIM
Ga0209685_1090491Ga0209685_10904911F029271MSKLSDLQEIKKLLDVDFRRHQFLDNQYNNSPSFNYDAAKSYVANIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESNIASYQRFGAQK
Ga0209685_1090516Ga0209685_10905163F084730VFAVGYFSYLNCIASGVYLYDLGNRIYGYGTPKRALIFF
Ga0209685_1090898Ga0209685_10908982F063080AILRALMISPKKIVAPIVIKIGFEKLIAVAWASGIRVKQVKPASIPIAPKKPLIKNNFVLFIFIAARPVECNIGSITIKAKRFLKKTTSRMCKFSDAFLIKITIIEKQTIDKIFKMIALVCEFCNLKNRIILTIMVSFPLCIHS
Ga0209685_1091533Ga0209685_10915331F058066FKKKDGFDKDGIPTDEANVLAAQRWDNVLNEIIYGLKCAKKLQDMDYNYKDKKLTKRLTKSSQRSFELIGKHLFSLWD
Ga0209685_1091539Ga0209685_10915392F040567KKYIVVERNRKFDSFDLINEDTNGLNEIWESHIPYKLNEDEKPNVRPLIFDNRSEAVKYKNKAQSDRDRDWRENDYIYKSFGDLKPKWKIEEYTGNLFK
Ga0209685_1093800Ga0209685_10938002F063455MKKLLLFLLLIPNLVMAETTSVWGDDGSLTIIQSETKPEVKYTVGEDSQTEISVSPQDGETIFIYGDELTI
Ga0209685_1094817Ga0209685_10948171F077771MYYTYYFQGMVFEEEEIEKDPKKAFLSYSKKFKNIDYLNDFHKKYVDESLSEFDERLHFEIIDGEAESYDDETGEEIYKSIFRMELKDVGPGAKKNYVYYEKYSPMLLLFDWLQNVIPANRYLNNWGGTAHIYSDQDWSSFESFMITWDGILRESTLTKNS
Ga0209685_1098788Ga0209685_10987882F073088FDQFVFLNNTYYLKPEFQSTQKNVIENELNIFIGFKEIGTIVGVKIIKYRRIKEIHKI
Ga0209685_1099044Ga0209685_10990441F061863AACLVIFGVVTKNSFEQLGFPNHPIGKPLGMGMFIMGWIYIAYIFSINKPNKLAFILPSIGIVIAVMMMKQYMVKKQTPPMVFPVIFALSWIILGLNAGNHLSGNQKYLGLFASFLVLLSMMQILPYQRTHNIVDGPGQPLFVIAWGILIMLNSNR
Ga0209685_1101605Ga0209685_11016051F078399MKMENNYWIVENWLIFKPEFNEELTDYYDIINKYNKIIFSEYNDPLIAIKTNNQFEYKYN
Ga0209685_1104871Ga0209685_11048711F074479MDTELEQHFSDNKKYSDEEIEELREKQYYVYRGYLNDFRHLFHNQIDDVEFETLFEKLMNGFLQYRLLDMVNSKRYLFNSFKPYVDKEGNIKDEHIDFSSQTYCSSS

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