3300034077: Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A5A4.3

Overview

Basic Information

• IMG/M Taxon OID: 3300034077
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0142001 | Gp0401913 | Ga0373899
• Sample Name: Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A5A4.3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 188848471
• Sequencing Scaffolds: 37
• Novel Protein Genes: 39
• Associated Families: 35

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	6
Not Available	16
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Spirochaetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Povalibacter → Povalibacter uvarum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Oak Ridge, Tennessee
• Coordinates
  • Lat. (^o): 36.0103
  • Long. (^o): -84.2696
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003800	Metagenome / Metatranscriptome	468	Y
F009579	Metagenome / Metatranscriptome	316	Y
F012756	Metagenome / Metatranscriptome	277	Y
F013320	Metagenome / Metatranscriptome	272	Y
F015115	Metagenome / Metatranscriptome	257	Y
F019675	Metagenome	228	Y
F020556	Metagenome	223	Y
F021332	Metagenome	219	Y
F023288	Metagenome	210	Y
F026662	Metagenome	197	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0373899_001719	All Organisms → cellular organisms → Bacteria	1629
Ga0373899_002547	All Organisms → cellular organisms → Bacteria	1440
Ga0373899_004856	Not Available	1169
Ga0373899_005604	All Organisms → cellular organisms → Bacteria → Acidobacteria	1114
Ga0373899_006193	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1081
Ga0373899_007945	All Organisms → cellular organisms → Bacteria → Spirochaetes	998
Ga0373899_008525	All Organisms → cellular organisms → Bacteria	974
Ga0373899_009020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094	955
Ga0373899_009296	Not Available	946
Ga0373899_012278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	863

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0373899_001719	Ga0373899_001719_1404_1628	F013320	MDTSEAVEVVVKVMTPYIGGTMARSATEAHCQKLGIAGGATVSPEQLDALLGKLGGGLNIFLGRDKSALVVAEAR
Ga0373899_002547	Ga0373899_002547_1016_1417	F023288	MSLGWAALAIAFFAWVAEADGLLALPRLGRVAIRTGGLEPPLSFSVRRGERVLFFFCEEDPERGGWSDVYTVLDQPRGTDGFEPCSALPPAATPSGWSLRGRVPVNDLQFESHERSTYVTRGSLERSLSAAGV
Ga0373899_004856	Ga0373899_004856_5_304	F101098	MVILPQTRGVFLGWLKTYVSVALWPMFFAFAERLALAIPWSAWLGAADGTTDIWGLTVNVLQGETMLAIFNISFFFVFLSIPIASYMIVSGASRPFRTL
Ga0373899_005604	Ga0373899_005604_414_851	F029138	MIRRTLLVALIPAAALAAARHFDIAASFQAPKKPGGQGSVAVTFHPLDPDVRVNESPAPRLKLDLAQTVLVDRQAPPLGQVPDYDPLTARYLDTAKPVLFPVAIAPTAPAGAHSVKASVVYFYCSTREAWCRRGSTEVLVPVAVR
Ga0373899_006193	Ga0373899_006193_975_1079	F009579	MSGVELVLAFLAGVVMGGALDRFVLPLLVDAWIDR
Ga0373899_007945	Ga0373899_007945_539_790	F080211	VFEYRRTPFLGVLFGAAIGFVVTWLLESPERPLTIGQTLLFYVLSCLPGLGLAMLGDPAPRRAKAEYLEIDFYAPKEPGGPAD
Ga0373899_008525	Ga0373899_008525_54_179	F009579	MSGLDLIVAFLAGVVMGGALDRFVLPILVDAWIDRLRRHGR
Ga0373899_009020	Ga0373899_009020_211_588	F054639	MRTAKQTILIAVVLALPYLVTGIFSDGPYAGRLIQGGIFLLVIAGAAAAFMAWRGRRMDEAQDERQDFIVGKATKFSFCVMAVSVQAYWAWQFAAQGNDGDSSFWLLVALWASFGLGYVYNEVRH
Ga0373899_009296	Ga0373899_009296_2_238	F101455	LGQASEAEWRPRLEAALAEADLYLFRGGHYPAGATAARGMLLRALGRGPEGEEALRQAFVLPDKGLAHHIARLALQEP
Ga0373899_012278	Ga0373899_012278_149_349	F062853	MADWIVAIATDPRRFPVVDHRHPNGTLRAVRERTPQVETDSAGHRLETWAYVCACGEVYAWERRSG
Ga0373899_012594	Ga0373899_012594_467_595	F094440	MRPAHDTESSKGLSLAWLAVLIMSAAILTYGTFVVLNLVGLR
Ga0373899_012685	Ga0373899_012685_51_527	F021332	MAKTPAAKTSRTRAKSRTPTLRVQVQHDIDKALERAGIPSAIDSDGWRWMQDPSGKGLIGVVAVTGQREDLSLRVVAPITPLPKAQATLHRSLRRIAEMNYEIPGHARLAIDSRTIWAVVAHNVGDIGPDDVPNCIFDCVWLSQAAAEWLKGPKPKKK
Ga0373899_012891	Ga0373899_012891_74_370	F044574	MRPAVRIIFAPIMSRTKGDRDRGLFVHGTTQNRTITIDPRSSEIGKTLLHEMIHLRHPDWSEEAVVSETRLRWGKMSWKEKARFLRLLGSAHLEGEEP
Ga0373899_013648	Ga0373899_013648_1_564	F034983	VERQAWLARVVERGSLDAGGAREELRRALQGKTGATSAVAEAATRRPEVPRAAVLLPAERWLLALVAQGAAGVEIALDELQESDLEGLRSAPLLRVAQAVARKNERVTLPAVLDALDEDARRVMSQIAVEGVPTEGLSAEECVRELRRQPLKARMAEIQKRLAGASEDAQEALLAEKTRLVRQMAGL
Ga0373899_014171	Ga0373899_014171_504_800	F038748	MGKRLAITCGFLLGVLLFTSVPALAQDPFAGLTRTLNSSARTWAAALMLIGALIAGGAIMMGSRESGHHTRNFLFGAVFLVLAGAGLAIYDRISGMLN
Ga0373899_016021	Ga0373899_016021_16_174	F105124	VDGAVNLTAFLLDNLSYAFRAVQGGLVQGYALSMLIGLFLLIAAGRFLLGLY
Ga0373899_018129	Ga0373899_018129_3_704	F020556	DRGVRRVEIGPPDPGFGFGRFTRVELRGRSFVVLTEAVTEPRFTVTTVVTERGVPLRKVESAFPHPLAREDDRDTIRRQLDLQHDDTLQRLDELLLDPSPRRVVWSDQSRSVEAGVLAWAISVVAQLAETQAGTDETARQLRLTHEKALVEDDALRAFQITPFGRVVVDPQHAGRVARRAVRAVAGWCRAFAVAALQADADAIGEPVRQATRRYALELERMGFYDRLLRRAKA
Ga0373899_018345	Ga0373899_018345_615_752	F071206	RKFRALGFAKVRVSGSGATRKVEGVWPGKDASAPLPRQIVAVARM
Ga0373899_020683	Ga0373899_020683_432_722	F012756	KIEELTPKPKERAMSPRQLAALQREEEIRKALARLKTDEDILAIELDPAEKLPTMRSAVKRAVAAHRPGTNMAVRGRTIYLSTGRLPGGRGRPPKA
Ga0373899_023680	Ga0373899_023680_232_393	F019675	MLRTRQIITVVMGILGALLIVRGVWGGVWPVSIQLIAGVLLLGYAILRWRYKL
Ga0373899_025264	Ga0373899_025264_414_674	F015115	MRAKLAGVCLFAAALALATWAPAQEATPTTITDIRQESTDRSTRLIVECTGPLAYTYYSPDPLTLVVDIPEVDASQVPARVNVGTRE
Ga0373899_026536	Ga0373899_026536_2_580	F059117	AGLALSLVTTIRVWNRPREVVRIGCDGIPQVVRLDNVAYSEPDEREIRAFATEFAVFYARSDSYSILNDFVWCANRMAPELREHFKRSVRGTPETPGLIAVIEKLRRRTQIDPGTLDIKVDKGPYPWKVQVKGFRQIVGDSGPGESFELELDLVRASRDERLEGLLIWGIRAKGDPIDTVLASVAAEGGRLP
Ga0373899_027123	Ga0373899_027123_1_453	F083633	MRFVVPRWALVSVLALFAVACGREFEGGGDLRAQKVVLKREVDGIREIVTRLERGEPVLPLDDVAISIDETFVRDLVAAQLPFEMDVDRFHLSLTEAEAQFRGSPVVRLRGALRLRKRPDLEAAVTVIGALEDIQVEQSSSTLKARIAVDH
Ga0373899_027999	Ga0373899_027999_211_438	F003800	MGDDRRDDADQRRADVYSSARIGAAAALTLVLVVLLVLDVAVPDYDISPGILLPLLGAILALLGLEASAVWRGVR
Ga0373899_030672	Ga0373899_030672_477_632	F057478	MVVLRSIIFTVLMIFVTAGFAIAVLVSALLPLTIEQRYVIPRNWGLSLTWLA
Ga0373899_030921	Ga0373899_030921_348_629	F105444	GHAVDGAAIEGEAVVLFATGDLTDAEATLPNVQTRSLLLAGLEPRVSYEIQVTSAFAPGAPAWRATAEAGDESTILLPWDGVRDGRLRLRRLR
Ga0373899_036410	Ga0373899_036410_2_496	F030485	MAAHARRLIAMLLLPLLAFACGGTDTEPAATATPAAPDHLVGLHASDLLKGFRERGLACKEPVREREFSHYVCESSTPLVQYRGEFYAKVPGRVEYIRVLVAQTGDAKLEVAAPLLAFVANQPYDGADPDAARAWVERAVAAPGQTEIGIAKLKVAGDLTRLVFE
Ga0373899_040069	Ga0373899_040069_12_416	F100549	MRNPPVLVSVLGFFAALAGFAWLFLGLRILGFDWFGVFGDLPAFESAGLWGWLAIGGGILWLLTAFGLWAMQPWAWMVAMIVADISLFEAFLWAFSYPGSGIGLSMGLLPLVIIWYLNSRDIKSQFGMTEPPQS
Ga0373899_040254	Ga0373899_040254_1_534	F080210	MLLATPEARAQAVELTAFGGLAFGGELIATPGLEAVTLQAGPLYGGAFNVEFLPRWRFEGSVSREESKVRGPASGTYVDVNVDRYMVGVQSQERLSGSFDIFGVFMLGATRYAPAGYESELWFTLGAAAGVKTYVTRNVGFRFEARGYYTPVVISGVGTCGGYGCVIGYTGTGTFSGD
Ga0373899_043163	Ga0373899_043163_26_313	F077749	MNADDAMERLLRDAMGAEIPQLSPAFDGRVMRRVRPRRLTTTGRVVMAVYSVVAAAALVWLVHDLPMNLTLAAVAIGVPVAAGAHAYVRRFAAGG
Ga0373899_044255	Ga0373899_044255_36_554	F046458	MRSGFERVVRVAVAGALLSALAGCGDDSPRPPMVVITPEPVRGVIARTSVSGFQTDVWISIELLLSQRGVLDITVDWTFPETWMYVDFGRTNCDYEQLASRNCPFILSSETKDPKPRVLYTEELDPGTYYLVLYNVPRDPRTGIGSDNTEAVSIQLGLTVKASGERSTDAIHL
Ga0373899_045124	Ga0373899_045124_85_549	F030485	CGGSKDAASSAPAAAAAPDHLAGLHASDLLKGFRERGLVCKDPVLDREFRHYVCESSTPLVQYRAEFYAKVPGRVEYIRVLVAQTGDAKLEVAGPLLAFVANQRYEGADPDAARAWVEKAVAAPGQTEIGIAKLKVSGDLTRLVFELKAAGSEW
Ga0373899_047253	Ga0373899_047253_46_252	F051241	MLLEEAEKRGKTPPPAPLVHGLETEPSQADRMERLDEQVVWADRNQLLHRIQMFFDAMPSSGWVEIDK
Ga0373899_051389	Ga0373899_051389_27_404	F069797	MDDAGDAPESAPPPSWDDVTDACLGLAQARGALLADPSGQVFAARGEWPEPGPTAIATKLVSMMNRTLKDAPTRSISAPLMGMHLTAWRVPLDQGLVTAAFIADQPVRTEARPAIDTEIHRAASA
Ga0373899_052842	Ga0373899_052842_292_498	F096021	MIDMVHEIFGVTADQASESEKIVRTMEQVRDIAESNRRSAGEMNETVSLLADAIRELDEEVRKFRIRT
Ga0373899_057298	Ga0373899_057298_236_487	F041285	MTSSLQLVSEQFPSLRERVACLFEREETFRELCEDYEACTLALGRQESNEGLKREYSALRLRLETELLGYLRQDAHSPVHRHQ
Ga0373899_058188	Ga0373899_058188_36_263	F080211	VFDYRRTPSLGLLFGAAIGFAVTWLVETPDRPLTLAQAVIFYALSCLPGLGIAMLCDPAPQRAKEEYLRVDFYAP
Ga0373899_058294	Ga0373899_058294_1_186	F026662	GLINPRVYHSADSKKSEIVVVFDTEDTKKAKEFAASADLKEAMEKSGVLDTPTIYFLESI
Ga0373899_059212	Ga0373899_059212_263_499	F077749	MHDDDVMDRLLRAAMAADAPQLSPAFDARVMQRVRPRRLTPTGRVVMALYAVVAAAAAVWLMGDLPMGSIVAAATIGVP