NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F094440

Metagenome / Metatranscriptome Family F094440

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F094440
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 44 residues
Representative Sequence MRSADDTETSKRLPSPAWLAVLILSAAILAYGTFVVLNLVGLR
Number of Associated Samples 95
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 66.98 %
% of genes near scaffold ends (potentially truncated) 35.85 %
% of genes from short scaffolds (< 2000 bps) 89.62 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (74.528 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil
(15.094 % of family members)
Environment Ontology (ENVO) Unclassified
(27.358 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(40.566 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58
1INPhiseqgaiiFebDRAFT_1014101451
2JGI1027J11758_122752932
3Ga0055467_100709372
4Ga0055440_101776261
5Ga0062593_1007377062
6Ga0063356_1050289762
7Ga0062595_1000195445
8Ga0062592_1024326261
9Ga0062591_1027536031
10Ga0068869_1009297443
11Ga0070691_103503342
12Ga0070671_1013550091
13Ga0070659_1003222044
14Ga0070705_1014760482
15Ga0070663_1009686392
16Ga0070697_1010654982
17Ga0070695_1002645532
18Ga0070695_1002923381
19Ga0068859_1006349893
20Ga0068861_1017675092
21Ga0070715_106635973
22Ga0075428_1004770144
23Ga0075421_1001900841
24Ga0075420_1015242891
25Ga0075425_1016760791
26Ga0068865_1001949731
27Ga0079218_129556852
28Ga0075418_116954701
29Ga0105091_102846941
30Ga0111538_135433801
31Ga0105100_109892001
32Ga0105241_115747661
33Ga0105249_120254461
34Ga0134125_109188341
35Ga0157309_103240742
36Ga0164241_103273711
37Ga0164300_100061669
38Ga0164300_100376144
39Ga0164303_102353431
40Ga0164302_118452382
41Ga0163162_110856121
42Ga0163162_115738042
43Ga0157375_114574462
44Ga0075344_10302802
45Ga0075340_10164813
46Ga0075343_11582532
47Ga0075342_10062405
48Ga0075342_10344083
49Ga0132258_106990621
50Ga0132258_134058532
51Ga0132256_1000785214
52Ga0184608_100281994
53Ga0184608_101027432
54Ga0190275_129693331
55Ga0190270_102218815
56Ga0190271_118347942
57Ga0173481_101687791
58Ga0210403_110163802
59Ga0207710_100481554
60Ga0207647_101048581
61Ga0207660_102784632
62Ga0207687_112102781
63Ga0207644_105980662
64Ga0207706_111544302
65Ga0210116_10309732
66Ga0207712_115397901
67Ga0207675_1002284162
68Ga0207675_1025472172
69Ga0208890_10060163
70Ga0209998_100125182
71Ga0209974_104014332
72Ga0207428_106409583
73Ga0209069_106203151
74Ga0247828_102775143
75Ga0247818_101617151
76Ga0247822_111847521
77Ga0247820_102189961
78Ga0247824_106246491
79Ga0308178_10135603
80Ga0308178_11223481
81Ga0307497_107747831
82Ga0315556_10371351
83Ga0307442_100428610
84Ga0307428_10318611
85Ga0307444_10025775
86Ga0307444_10067144
87Ga0310888_103722991
88Ga0315532_11564221
89Ga0315553_100819131
90Ga0315553_102117873
91Ga0307469_109934862
92Ga0310900_106310531
93Ga0310885_107434641
94Ga0310884_103213002
95Ga0214473_113074511
96Ga0310903_104013863
97Ga0310903_107886291
98Ga0310906_100882921
99Ga0310890_116627482
100Ga0310895_102889692
101Ga0310889_103497563
102Ga0307471_1007330341
103Ga0307472_1018344131
104Ga0310896_100583602
105Ga0373899_012594_467_595
106Ga0373958_0148363_127_276
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 39.44%    β-sheet: 0.00%    Coil/Unstructured: 60.56%
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Variant

510152025303540MRSADDTETSKRLPSPAWLAVLILSAAILAYGTFVVLNLVGLRExtracel.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
25.5%74.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Sediment
Salt Marsh
Salt Marsh Sediment
Natural And Restored Wetlands
Groundwater Sediment
Watersheds
Soil
Soil
Terrestrial Soil
Soil
Agricultural Soil
Soil
Soil
Hardwood Forest Soil
Soil
Soil
Natural And Restored Wetlands
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Rhizosphere Soil
Switchgrass Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
Sediment Slurry
3.8%3.8%2.8%12.3%3.8%2.8%15.1%4.7%5.7%3.8%2.8%6.6%2.8%2.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10141014513300000364SoilMRSANDNEISRRLPSPAWLLALLVAAAIFTYGTFVVLNLVRLR*
JGI1027J11758_1227529323300000789SoilMRNRSPMRSANDNETSRRLPSAAWLTVLAVSAAILVYGTFVVLNLTGLR*
Ga0055467_1007093723300003996Natural And Restored WetlandsMHSAHDTKTPKRLPSAAWIAVLAVSAAMLAYATMVVLNLVGLR*
Ga0055440_1017762613300004020Natural And Restored WetlandsMQSAHDTETPKRLPSAAWVAVFAVSAAILAYATLVVLNLVGLR*
Ga0062593_10073770623300004114SoilMGIRSFMRSADDTETSKRLPSPAWLAVLILSAAILAYGTFVVLNLVGLR*
Ga0063356_10502897623300004463Arabidopsis Thaliana RhizosphereMRSANDNETSRRLPSAAWLAVLAVSAAILIYGTFVVLNLTGLR*
Ga0062595_10001954453300004479SoilMRSTNDNEISRRLPSPAWLLALLVAAAIFTYGTFVVLNLVGLR*
Ga0062592_10243262613300004480SoilMRSAHDTETSKRLPSIAWLAVMILSAAILTYGTFVVLNLVGLR*
Ga0062591_10275360313300004643SoilMRSADDTETSKRLPSPAWLAVLILSAAILAYGTFVVLNLVGLR*
Ga0068869_10092974433300005334Miscanthus RhizosphereGMRNRSFMRSAHDTETSKRLPSIAWLAVMILSAAILTYGTFVVLNLVGLR*
Ga0070691_1035033423300005341Corn, Switchgrass And Miscanthus RhizosphereMRSAHDTETSKRLPSLAWLAVMILSAAILTYGTFVVLNLVGLR*
Ga0070671_10135500913300005355Switchgrass RhizosphereMRNRSFMRSANDNETSRRLPSAAWLAVMAVSAAILIYGTFVVLNLTGLR*
Ga0070659_10032220443300005366Corn RhizospherePQGMRNRSFMRSAHDTETSKRLPSLAWLAVMILSAAILTYGTFVVLNLVGLR*
Ga0070705_10147604823300005440Corn, Switchgrass And Miscanthus RhizosphereMRSANDNETSRRLPSAAWLAVMAISAAILIYGTFVVLNLTGLR*
Ga0070663_10096863923300005455Corn RhizosphereMRSADDTETSKRLPSIAWLAVMILSAAILTYGTFVVLNLVGLR*
Ga0070697_10106549823300005536Corn, Switchgrass And Miscanthus RhizosphereVRNRSFMRSANDNETSRRLPSAAWLAVMAISAAILIYGTFVVLNLTGLR*
Ga0070695_10026455323300005545Corn, Switchgrass And Miscanthus RhizosphereMRSAHDTESSKSLSLAWLAVMIMSAAILTYGTFVVLNLVGLR*
Ga0070695_10029233813300005545Corn, Switchgrass And Miscanthus RhizosphereMRSANDNETSRRLPSAAWLAVMAVSAAILIYGTFVVLNLTGLR*
Ga0068859_10063498933300005617Switchgrass RhizosphereMRSANETSRRLPSAAWLAVTAISAAILIYGTFVVLNLTGLR*
Ga0068861_10176750923300005719Switchgrass RhizosphereMRSANDNETSRRLPSAAWLAVLALSAAMLIYGTFVVLNLTGLR*
Ga0070715_1066359733300006163Corn, Switchgrass And Miscanthus RhizosphereMRPANDNETASRLPSAAWLAVLLVSAAILIYGTFVVLNLVGLR*
Ga0075428_10047701443300006844Populus RhizosphereMRSADDTETSKRLPSPAWLAVMILSAAILAYGTFVVLNLVGLR*
Ga0075421_10019008413300006845Populus RhizosphereMRSADDTETSKRLPSPAWLAVMILSAAILAYGTFVVLNLVG
Ga0075420_10152428913300006853Populus RhizosphereRSADDTETSKRLPSPAWLAVMILSAAILAYGTFVVLNLVGLR*
Ga0075425_10167607913300006854Populus RhizosphereMRSTNDNEISRRLPSPAWLLALLVAAAIFTYETFVVLNLVGLR*
Ga0068865_10019497313300006881Miscanthus RhizosphereMRNRSLMRSANDNETSRRLPSAAWLAVMAVSAAILIYGTFVVLNLTGLR*
Ga0079218_1295568523300007004Agricultural SoilMSYREEAPRRLPSLAWLAVLVLGAAMATYGTFVVLNLLGLR*
Ga0075418_1169547013300009100Populus RhizosphereMGNRSFMRSADDTETSKRLPSPAWLAVMILSAAILAYGTFVVLNLVGLR*
Ga0105091_1028469413300009146Freshwater SedimentMRSAHDTETSKRLSLAWLAVMIMSAAILTYGTFVVLNLVGLR*
Ga0111538_1354338013300009156Populus RhizosphereDTETSKRLPSPAWLAVMILSAAILAYGTFVVLNLVGLR*
Ga0105100_1098920013300009166Freshwater SedimentMGNRSFMNSAHDTETSKRLPSLAWVAVTILTAAILAYGTFVVLNLVGLR*
Ga0105241_1157476613300009174Corn RhizosphereTETSKRLPSPAWLAVLILSAAILAYGTFVVLNLVGLR*
Ga0105249_1202544613300009553Switchgrass RhizosphereAFILGMRNRSFMRSANDNETSRRLTSAAWLAVMAISAAILIYGTFVVLNLTGLR*
Ga0134125_1091883413300010371Terrestrial SoilMGIRSFMRSADDTETSKRLPSPAWLAVLIMSAAILAYGTFVVLNLVGLR*
Ga0157309_1032407423300012895SoilSKRLPSPAWLAVLILSAAILAYGTFVVLNLVGLR*
Ga0164241_1032737113300012943SoilMRNRSFMRSAHDTETSKRLPSLAWLAVMIMSAAILTYGTFVVLNLVGLR*
Ga0164300_1000616693300012951SoilMRNRSFMRSANDNETSRRLPSAAWLAVMAISAAILIYGTFVVLNLTGLR*
Ga0164300_1003761443300012951SoilMRPADDNETASRLPSAAWLAVLLVSAAILIYGTFVVLNLVGLR*
Ga0164303_1023534313300012957SoilMRSANDNETSRRLPSAAWLAVMAISAAILIYGTVVVLNLTGLR*
Ga0164302_1184523823300012961SoilMRPANDNETSSRLPSPAWLALLVVSAAILTYGTFVILNLV
Ga0163162_1108561213300013306Switchgrass RhizosphereMRNRSFMRSANDNETSRPLPSAAWLAVLALSAAMLIYGTFVVLNLTGLR*
Ga0163162_1157380423300013306Switchgrass RhizosphereMRSANDNETSRRLPSTAWLAVLAVSAAILIYGTFVVLNLTGLR*
Ga0157375_1145744623300013308Miscanthus RhizosphereMRSANETSRRLPSAAWLAVMAISAAILIYGTFVVLNLTGLR*
Ga0075344_103028023300014296Natural And Restored WetlandsMYSAHDTETPKRLPSAAWIAVLAVSAAMLAYATMVVLNLVGLR*
Ga0075340_101648133300014304Natural And Restored WetlandsMNSTPDTETPKRLPGAAWVAVLAVSAAILAYATLVVLNLVGLR*
Ga0075343_115825323300014317Natural And Restored WetlandsMPSTHDTETPKRLPGAAWVAVLAVSAAILAYATLVVLNLVGLR*
Ga0075342_100624053300014320Natural And Restored WetlandsMNSTPDTATPKRLPGAAWVAVLAVSAAILAYATLVILNLVGLR*
Ga0075342_103440833300014320Natural And Restored WetlandsMHSAHDTETPKRLPSAAWIAVLAVSAAMLAYATMVVLNLVGLR*
Ga0132258_1069906213300015371Arabidopsis RhizosphereMRSAHDTETSKRLPSLAWLAVMIMSAAILTYGTFVVLNLVGLR*
Ga0132258_1340585323300015371Arabidopsis RhizosphereMRNRSLMRSANDNETSRRLPSAAWLAVLAVSAAILIYGTFVVLNLTVLR*
Ga0132256_10007852143300015372Arabidopsis RhizosphereMRPANDNETSSRLPSAAWLAALAVSAAFLIYGTFVVLNLTGLR*
Ga0184608_1002819943300018028Groundwater SedimentMHSANDNETSRRLPSAAWLAVLAMSAAMLIYGTFVVLNLTGLR
Ga0184608_1010274323300018028Groundwater SedimentMRSANDNETSRRLPSAAWLAVLALSAAMLIYGTFVVLNLTGLR
Ga0190275_1296933313300018432SoilMNNGFMPSAKVELSKRQSVAWVAVTVLSAAVLVYGAFVVLNLVGLR
Ga0190270_1022188153300018469SoilMRTAHDTESPKRLPSTAWLAVLVVSAAIIAYGTFVVLNLVGLR
Ga0190271_1183479423300018481SoilMRPAHDTESSKGLSLAWLAVMIMSAAILTYGTFVVLNLVGLR
Ga0173481_1016877913300019356SoilMRSAHDTETSKRLPSIAWLAVMILSAAILTYGTFVV
Ga0210403_1101638023300020580SoilMRPANDNETASRLPSAAWLAVLLVSAAVLIYGTFVVLNLVGLR
Ga0207710_1004815543300025900Switchgrass RhizosphereMRSANDNETSRRLPSAAWLAVMAISAAILIYGTFVVLNLTGLR
Ga0207647_1010485813300025904Corn RhizosphereMRSADDTETSKRLPSPAWLAVLILSAAILAYGTFVVLNLVGLR
Ga0207660_1027846323300025917Corn RhizosphereMRSAHDTETSKRLPSIAWLAVMILSAAILTYGTFVVLNLVGLR
Ga0207687_1121027813300025927Miscanthus RhizosphereMRSADDTETSKRLPSPAWLAVLILSAAILAYGTFVV
Ga0207644_1059806623300025931Switchgrass RhizosphereMRSANDNETSRRLPSAAWLAVMAVSAAILIYGTFVVLNLTGLR
Ga0207706_1115443023300025933Corn RhizosphereMRSADDTETSKRLPSIAWLAVMILSAAILTYGTFVVLNLVGLR
Ga0210116_103097323300025959Natural And Restored WetlandsMPSTHDTETPKRLPGAAWVAVLAVSAAILAYATLVILNLVGLR
Ga0207712_1153979013300025961Switchgrass RhizosphereDNETSRRLPSAAWLAVLALSAAMLIYGTFVVLNLTGLR
Ga0207675_10022841623300026118Switchgrass RhizosphereMRSANDNETSRRLPSAAWLAVMAISAAILIYGTVVVLNLTGLR
Ga0207675_10254721723300026118Switchgrass RhizosphereETSKRLPSIAWLAVMILSAAILTYGTFVVLNLVGLR
Ga0208890_100601633300027523SoilMRSANDNETSRRLPSAAWLAVLALSAAMLIYGTFVVLNL
Ga0209998_1001251823300027717Arabidopsis Thaliana RhizosphereMRSANDNEISRRLPSPAWLLALLVAAAIFTYGTFVVLNLVGLR
Ga0209974_1040143323300027876Arabidopsis Thaliana RhizosphereMRSANDNEISRRLPSPAWLLALLVAAAIFTYGTFVVLNLVRLR
Ga0207428_1064095833300027907Populus RhizosphereSKGMGIRSFMRSADDTETSKRLPSPAWLAVLILSAAILAYGTFVVLNLVGLR
Ga0209069_1062031513300027915WatershedsMRNRSFMRPANDNDTASRLPSPAGWAMLLVSAAILIYGAFVVLNLVGLR
Ga0247828_1027751433300028587SoilMRSAHDTETSKRLPSLAWLAVMIMSAAILTYGTFVVLNLVGLR
Ga0247818_1016171513300028589SoilMRSANDNETSRRLPSAAWLAVLALSAAMLIYGAFVVLNLTGLR
Ga0247822_1118475213300028592SoilMRSADDTETSKRLPSPAWLAVLILSAAILAYGTFVVLN
Ga0247820_1021899613300028597SoilMRSANDNETSRRLPSAAWLAVLAVSAAILIYGTFVVLNLTGLR
Ga0247824_1062464913300028809SoilMRSANDNETSRRLPSAAWLAVLALSAAMLIYGAFVV
Ga0308178_101356033300030990SoilSANDNETSRRLPSAAWLAVLALSAAMLIYGTFVVLNLTGLR
Ga0308178_112234813300030990SoilRSFMHSANDNETSRRLPSAAWLAVLAMSAAMLIYGTFVVLNLTGLR
Ga0307497_1077478313300031226SoilRSANDNETSRRLPSAAWLAVLAVSAAILIYGTFVVLNLTGLR
Ga0315556_103713513300031256Salt Marsh SedimentMHSAHDTETPKRLPSAAWIAVLAVSAAILAYATLVVLNLVGLR
Ga0307442_1004286103300031274Salt MarshMQPAHDTETPKRLPSAAWVAVLAVSAAILAYATLVVLNLVGLR
Ga0307428_103186113300031280Salt MarshMHSAHDTETPKRLPSAAWIAVFAVSAAILAYATMVVLNLVGLR
Ga0307444_100257753300031360Salt MarshMHSAHDTETPKRLPSAAWIAVLAVSAAILAYATLVVLNLIGLR
Ga0307444_100671443300031360Salt MarshMHSAHDTETPKRLPSAAWVAVLAVSAAILAYATLVVLNLVGLR
Ga0310888_1037229913300031538SoilDTESSKGLSLAWLAVMIMSAAILTYGTFVVLNLVGLR
Ga0315532_115642213300031575Salt Marsh SedimentMHSAHDTETPKRLPSAAWIAVLAVSAAILAYATLVVLNLVGL
Ga0315553_1008191313300031652Salt Marsh SedimentASGEKRSFMHSAHDTETPKRLPSAAWIAVLAVSAAILAYATLVVLNLVGLR
Ga0315553_1021178733300031652Salt Marsh SedimentTPKRLPSAAWIAVLAVSAAILAYATLVVLNLVGLR
Ga0307469_1099348623300031720Hardwood Forest SoilMRSANDNETTRRLPSAAWLAVLAVSAAILIYGTFVVLNLTGLR
Ga0310900_1063105313300031908SoilMRSANDNETSRRLPSAAWLAVMAISAAILIYGTFVVLNLTGL
Ga0310885_1074346413300031943SoilRRPAFISKGMGNRSFMRSADDTETSKRLPSPAWLAVMILSAAILAYGTFVVLNLVGLR
Ga0310884_1032130023300031944SoilMRSAHDTETSKRLPSIAWLAVMIMSAAILTYGTFVVLNL
Ga0214473_1130745113300031949SoilMRSADDTQTSKRLPSPAWLAVMILSAAILAYGTFVVLNLVGLR
Ga0310903_1040138633300032000SoilDDTETSKRLPSPAWLAVLILSAAILAYGTFVVLNLVGLR
Ga0310903_1078862913300032000SoilMRPAHDTESSKGLSLAWLAVMIMSAAILTYGTFVV
Ga0310906_1008829213300032013SoilMGIRSFMRSADDTETSKRLPSPAWLAVLILSAAILAYGTFVVLNLVGLR
Ga0310890_1166274823300032075SoilMRSADDTETSKRLPSPAWLAVMILSAAILAYGTFVVLNLVGL
Ga0310895_1028896923300032122SoilMRSAHDTETSKRLPSLAWLAVMILSAAILTYGTFVVLNLVGL
Ga0310889_1034975633300032179SoilSKGMGNRSFMRSADDTETSKRLPSPAWLAVMILSAAILAYGTFVVLNLVGLR
Ga0307471_10073303413300032180Hardwood Forest SoilMRPADDNETASRLPSAAWLAVLLVSTAILIYGTFVVLNLVGLR
Ga0307472_10183441313300032205Hardwood Forest SoilFILGMRNRSRMSSANDNETSRRLPSAAWLAVLALSAAMLIYGTFVVLNLTGLR
Ga0310896_1005836023300032211SoilMRSANDTETSKRLPSLAWLAVMIMSAAILTYGTFVVLNLVGLR
Ga0373899_012594_467_5953300034077Sediment SlurryMRPAHDTESSKGLSLAWLAVLIMSAAILTYGTFVVLNLVGLR
Ga0373958_0148363_127_2763300034819Rhizosphere SoilMRNRSFMRSANDNETSRRLPSAAWLAVMAISAAILIYGTFVVLNLTGLR


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