Metagenome / Metatranscriptome Family F080211

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080211
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	80 residues
Representative Sequence	VFEYRRTPYLGLVYAAAIGYAVTWLVETPDRPLTVVQAAIFYALSYLPGLGLAMLSDPAPRKAKAEYLKVDFYAPKEPAGGD
Number of Associated Samples	45
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.33 %
% of genes near scaffold ends (potentially truncated)	28.70 %
% of genes from short scaffolds (< 2000 bps)	81.74 %
Associated GOLD sequencing projects	39
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.565 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (39.130 % of family members)
Environment Ontology (ENVO)	Unclassified (39.130 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (44.348 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.55% β-sheet: 0.00% Coil/Unstructured: 55.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF04307	YdjM	29.57
PF01408	GFO_IDH_MocA	14.78
PF05199	GMC_oxred_C	8.70
PF01553	Acyltransferase	4.35
PF01804	Penicil_amidase	0.87
PF00005	ABC_tran	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1988	Membrane-bound metal-dependent hydrolase YbcI, DUF457 family	General function prediction only [R]	29.57
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	8.70
COG2366	Acyl-homoserine lactone (AHL) acylase PvdQ	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.57 %
Unclassified	root	N/A	30.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.57 %
Unclassified	root	N/A	30.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.57 %
Unclassified	root	N/A	30.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.43 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	25.22 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	18.26 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	6.09 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.43 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	25.22 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	18.26 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6.09 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.43 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	25.22 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	18.26 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5.22 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.43 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	25.22 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	18.26 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	5.22 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.43 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	25.22 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	18.26 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.22 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002988\|FeGlu_10242621	All Organisms → cellular organisms → Bacteria → Spirochaetes	699	Open in IMG/M
3300004282\|Ga0066599_100298335	Not Available	948	Open in IMG/M
3300004778\|Ga0062383_10138332	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1080	Open in IMG/M
3300006224\|Ga0079037_100008691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6445	Open in IMG/M
3300006224\|Ga0079037_100282044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1533	Open in IMG/M
3300006224\|Ga0079037_100420135	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1270	Open in IMG/M
3300006224\|Ga0079037_100420289	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1269	Open in IMG/M
3300006224\|Ga0079037_100426113	All Organisms → cellular organisms → Bacteria → Spirochaetes	1261	Open in IMG/M
3300006224\|Ga0079037_100719894	All Organisms → cellular organisms → Bacteria → Spirochaetes	976	Open in IMG/M
3300006224\|Ga0079037_101130764	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	777	Open in IMG/M
3300006224\|Ga0079037_101151406	Not Available	770	Open in IMG/M
3300006224\|Ga0079037_102195523	Not Available	551	Open in IMG/M
3300009009\|Ga0105105_10161711	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1135	Open in IMG/M
3300009037\|Ga0105093_10010859	All Organisms → cellular organisms → Bacteria	3688	Open in IMG/M
3300009075\|Ga0105090_10046567	All Organisms → cellular organisms → Bacteria	2708	Open in IMG/M
3300009075\|Ga0105090_10814927	All Organisms → cellular organisms → Bacteria → Spirochaetes	567	Open in IMG/M
3300009082\|Ga0105099_10025212	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3049	Open in IMG/M
3300009091\|Ga0102851_10117163	All Organisms → cellular organisms → Bacteria	2349	Open in IMG/M
3300009091\|Ga0102851_10121864	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2310	Open in IMG/M
3300009091\|Ga0102851_11466414	All Organisms → cellular organisms → Bacteria → Spirochaetes	760	Open in IMG/M
3300009091\|Ga0102851_11664771	Not Available	716	Open in IMG/M
3300009091\|Ga0102851_11786914	Not Available	692	Open in IMG/M
3300009091\|Ga0102851_12358263	Not Available	607	Open in IMG/M
3300009091\|Ga0102851_12851638	Not Available	555	Open in IMG/M
3300009111\|Ga0115026_10050681	All Organisms → cellular organisms → Bacteria	2294	Open in IMG/M
3300009111\|Ga0115026_10139133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1547	Open in IMG/M
3300009111\|Ga0115026_10403168	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	991	Open in IMG/M
3300009111\|Ga0115026_10798703	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	737	Open in IMG/M
3300009131\|Ga0115027_10110555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1602	Open in IMG/M
3300009131\|Ga0115027_10143058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1451	Open in IMG/M
3300009131\|Ga0115027_10168341	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1362	Open in IMG/M
3300009131\|Ga0115027_10772435	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300009131\|Ga0115027_10820233	All Organisms → cellular organisms → Bacteria → Spirochaetes	711	Open in IMG/M
3300009167\|Ga0113563_10042309	All Organisms → cellular organisms → Bacteria	3765	Open in IMG/M
3300009167\|Ga0113563_10074223	All Organisms → cellular organisms → Bacteria	3001	Open in IMG/M
3300009167\|Ga0113563_10195376	All Organisms → cellular organisms → Bacteria	2005	Open in IMG/M
3300009167\|Ga0113563_10236722	All Organisms → cellular organisms → Bacteria	1846	Open in IMG/M
3300009167\|Ga0113563_10782656	Not Available	1078	Open in IMG/M
3300009167\|Ga0113563_11068620	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	933	Open in IMG/M
3300009167\|Ga0113563_11490105	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	797	Open in IMG/M
3300009167\|Ga0113563_13486831	Not Available	532	Open in IMG/M
3300009170\|Ga0105096_10020956	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3174	Open in IMG/M
3300009179\|Ga0115028_10031237	All Organisms → cellular organisms → Bacteria	2476	Open in IMG/M
3300009179\|Ga0115028_10216778	All Organisms → cellular organisms → Bacteria → Spirochaetes	1224	Open in IMG/M
3300009179\|Ga0115028_10600586	Not Available	822	Open in IMG/M
3300009179\|Ga0115028_11657469	All Organisms → cellular organisms → Bacteria → Spirochaetes	550	Open in IMG/M
3300009179\|Ga0115028_11854727	Not Available	526	Open in IMG/M
3300009455\|Ga0114939_10052659	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1757	Open in IMG/M
3300021859\|Ga0210334_10807782	All Organisms → cellular organisms → Bacteria → FCB group	572	Open in IMG/M
3300024056\|Ga0124853_1150756	Not Available	704	Open in IMG/M
3300027693\|Ga0209704_1065612	All Organisms → cellular organisms → Bacteria → Spirochaetes	1007	Open in IMG/M
3300027726\|Ga0209285_10014888	All Organisms → cellular organisms → Bacteria	2173	Open in IMG/M
3300027871\|Ga0209397_10064110	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1425	Open in IMG/M
3300027871\|Ga0209397_10064702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1420	Open in IMG/M
3300027877\|Ga0209293_10147589	All Organisms → cellular organisms → Bacteria → Spirochaetes	1116	Open in IMG/M
3300027877\|Ga0209293_10192964	All Organisms → cellular organisms → Bacteria → Spirochaetes	995	Open in IMG/M
3300027885\|Ga0209450_10162555	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1553	Open in IMG/M
3300027885\|Ga0209450_10225864	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1332	Open in IMG/M
3300027885\|Ga0209450_10454929	Not Available	936	Open in IMG/M
3300027890\|Ga0209496_10316438	All Organisms → cellular organisms → Bacteria → Spirochaetes	787	Open in IMG/M
3300027890\|Ga0209496_10366464	Not Available	739	Open in IMG/M
3300027890\|Ga0209496_10751465	Not Available	536	Open in IMG/M
3300027899\|Ga0209668_10601715	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	734	Open in IMG/M
3300027900\|Ga0209253_10249835	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1396	Open in IMG/M
3300032143\|Ga0315292_10217768	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1568	Open in IMG/M
3300032156\|Ga0315295_10319353	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300032164\|Ga0315283_10394822	All Organisms → cellular organisms → Bacteria	1504	Open in IMG/M
3300033408\|Ga0316605_10105561	All Organisms → cellular organisms → Bacteria	2187	Open in IMG/M
3300033408\|Ga0316605_10107438	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2172	Open in IMG/M
3300033408\|Ga0316605_10197649	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1687	Open in IMG/M
3300033408\|Ga0316605_10499895	All Organisms → cellular organisms → Bacteria → Spirochaetes	1119	Open in IMG/M
3300033408\|Ga0316605_10514354	All Organisms → cellular organisms → Bacteria → Spirochaetes	1105	Open in IMG/M
3300033408\|Ga0316605_11185303	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	737	Open in IMG/M
3300033408\|Ga0316605_11518882	Not Available	650	Open in IMG/M
3300033408\|Ga0316605_11742433	Not Available	606	Open in IMG/M
3300033408\|Ga0316605_12176947	Not Available	539	Open in IMG/M
3300033413\|Ga0316603_10191913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1731	Open in IMG/M
3300033413\|Ga0316603_10292529	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1435	Open in IMG/M
3300033413\|Ga0316603_10319588	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300033413\|Ga0316603_10502816	All Organisms → cellular organisms → Bacteria → Spirochaetes	1113	Open in IMG/M
3300033413\|Ga0316603_12296268	Not Available	509	Open in IMG/M
3300033414\|Ga0316619_10993302	All Organisms → cellular organisms → Bacteria → Spirochaetes	730	Open in IMG/M
3300033414\|Ga0316619_11192708	Not Available	672	Open in IMG/M
3300033414\|Ga0316619_11879812	Not Available	543	Open in IMG/M
3300033416\|Ga0316622_100043584	All Organisms → cellular organisms → Bacteria	4155	Open in IMG/M
3300033416\|Ga0316622_100078260	All Organisms → cellular organisms → Bacteria	3235	Open in IMG/M
3300033416\|Ga0316622_100397300	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1548	Open in IMG/M
3300033416\|Ga0316622_101204946	All Organisms → cellular organisms → Bacteria → Spirochaetes	885	Open in IMG/M
3300033416\|Ga0316622_101744016	Not Available	725	Open in IMG/M
3300033416\|Ga0316622_102507347	Not Available	594	Open in IMG/M
3300033416\|Ga0316622_102587191	Not Available	584	Open in IMG/M
3300033418\|Ga0316625_100806781	Not Available	806	Open in IMG/M
3300033418\|Ga0316625_102612397	Not Available	513	Open in IMG/M
3300033419\|Ga0316601_100043654	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3256	Open in IMG/M
3300033419\|Ga0316601_100109929	All Organisms → cellular organisms → Bacteria	2251	Open in IMG/M
3300033419\|Ga0316601_101472250	Not Available	685	Open in IMG/M
3300033434\|Ga0316613_10271929	All Organisms → cellular organisms → Bacteria → Spirochaetes	1114	Open in IMG/M
3300033480\|Ga0316620_12587421	Not Available	505	Open in IMG/M
3300033483\|Ga0316629_10735519	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	750	Open in IMG/M
3300033485\|Ga0316626_10023965	All Organisms → cellular organisms → Bacteria	3827	Open in IMG/M
3300033487\|Ga0316630_12007689	Not Available	531	Open in IMG/M
3300033488\|Ga0316621_10263649	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1113	Open in IMG/M
3300033488\|Ga0316621_10282991	Not Available	1081	Open in IMG/M
3300033488\|Ga0316621_10468073	All Organisms → cellular organisms → Bacteria → Spirochaetes	874	Open in IMG/M
3300033488\|Ga0316621_10843315	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	673	Open in IMG/M
3300033513\|Ga0316628_101489205	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	902	Open in IMG/M
3300033521\|Ga0316616_100224016	All Organisms → cellular organisms → Bacteria	1903	Open in IMG/M
3300033521\|Ga0316616_101202021	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	963	Open in IMG/M
3300033521\|Ga0316616_102033274	Not Available	762	Open in IMG/M
3300033521\|Ga0316616_103977392	Not Available	556	Open in IMG/M
3300033557\|Ga0316617_101155397	Not Available	766	Open in IMG/M
3300034054\|Ga0373891_020000	All Organisms → cellular organisms → Bacteria → Spirochaetes	973	Open in IMG/M
3300034077\|Ga0373899_007945	All Organisms → cellular organisms → Bacteria → Spirochaetes	998	Open in IMG/M
3300034077\|Ga0373899_058188	Not Available	503	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.39%
Engineered	Engineered	2.61%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	57.39%
Terrestrial	Environmental → Terrestrial	40.00%
Bioremediation	Engineered → Bioremediation	2.61%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	56.52%
Soil	Environmental → Terrestrial → Soil	40.00%
Metal	Engineered → Bioremediation → Metal	2.61%
Marine	Environmental → Aquatic → Marine	0.87%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	39.13%
Sediment	Environmental → Aquatic → Freshwater → Sediment	25.22%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	22.61%
Lentic	Environmental → Aquatic → Freshwater → Lentic	4.35%
Lake	Environmental → Aquatic → Freshwater → Lake	2.61%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	2.61%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.87%
Pond	Environmental → Aquatic → Freshwater → Pond	0.87%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	39.13%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	25.22%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	22.61%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	4.35%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.61%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	2.61%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.87%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.87%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	39.13%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	21.74%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	18.26%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	6.96%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	4.35%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.61%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	2.61%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.87%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.87%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.87%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.87%
Wetland Sediment	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Wetland Sediment	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002988	Fe-reducing enrichment culture from wetland sample 1	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009455	Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal Spring	Environmental	Open in IMG/M
3300021859	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.306 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024056	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300027693	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027726	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034054	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A3A4.1	Engineered	Open in IMG/M
3300034077	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A5A4.3	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FeGlu_102426211	3300002988	Wetland Sediment	LGMLYAAVIGCAVIWLLEMPHRPLTIMQSAVFYVLSYLPGLGLAMLSDPAAHRAKAEYLKVDYYAPREET*
Ga0066599_1002983352	3300004282	Freshwater	VFDYRRTPFLGLLYAVVIGYVVTWLLEAPDRPMTLAQTLLFYVLSYLPGLGLAMLGDPAPHRAKAEYLKVDFYAPKDEARRAG*
Ga0062383_101383322	3300004778	Wetland Sediment	VFDYRRTPYLGLAYAAAIGFAVTYLIETPDRPLTLGQMAIFYMLSYLPGLGLAMLSDPAPGRAKAEYLKVDYYAPKGPAR
Ga0079037_1000086913	3300006224	Freshwater Wetlands	VFTYRRTPYLGLVYAAAIGYAVTWLVATPDRPLTLVQQAIFYALSYLPGLGLAMLSDPASHRAKTEYLKVDFYAPKKTAGGD*
Ga0079037_1002820443	3300006224	Freshwater Wetlands	VFEYRRTPYLGLVYAGVIGFAVTQLIETPDRPLTLVQTMIFYVLSYLPGLGLAMLGDPAPHRAKAEYLKVDFYAPKEPGEEAACR*
Ga0079037_1004201351	3300006224	Freshwater Wetlands	VFEYRRTPYLGLVFAAAIGFAVTWLLETPERPLTLAQAAIFYALSYLPGLGLAMLTDPAPRKAKAEYLKVDFYAPRDVGEAG
Ga0079037_1004202892	3300006224	Freshwater Wetlands	VFEYRRTPYLGLIYAAAIGYAVTFLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPAPQKAKTEYLNVDYYAPTDTVDAAGGRATPKRGLSIR*
Ga0079037_1004261132	3300006224	Freshwater Wetlands	VFEYRRTPYLGLLFGAAIGFAVTWLLESPERPLTPVQTALFYALSCLPGLGLAMLGDPAPRRAKAEYLKVDFYAPSDPAD*
Ga0079037_1007198942	3300006224	Freshwater Wetlands	VFEYRRTPFLGLLFGAAIGFVVTWLLESPERPLTIGQTLLFYVLSCLPGLGLAMLGDPAPQRAKAEYLEIDFYAPREPGGPAT*
Ga0079037_1011307641	3300006224	Freshwater Wetlands	MFQYRRTPYLGVIYGAVIGYVVMWLVESPDRPLTFAQEAIFYALSCLPGLGLAMLGDPASRKAKAEYLKVDYYAPKETTYPG*
Ga0079037_1011514062	3300006224	Freshwater Wetlands	VFEYRRTPYLGLVYAAAIGYAVTWLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPATRKAKAEYLKVDYYAPKDTVDAADGRATPNRGPSFR*
Ga0079037_1021955232	3300006224	Freshwater Wetlands	VFEYRRTPYLGLIYAAAIGYAVTWLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPAPHKAKTEYLNVDYYAPKDAADTID*
Ga0105105_101617112	3300009009	Freshwater Sediment	VFEYRRTPYLGLVYAALIGCAVVWLVELPDRPMSAGQMAVFYVLSYLPGLGLAMLGDPAAHRAKARYLKVDYYAPRE
Ga0105093_100108595	3300009037	Freshwater Sediment	VFEYRRTPYLGLVYAALIGCAVVWLVELPDRPMSAGQMAVFYVLSYLPGLGLAMLGDPAAHRAKARYLKVDYYAPREPT*
Ga0105090_100465675	3300009075	Freshwater Sediment	VFEYRRTPYLGLVYAALIGCAVVWLVELPDRPMSVGQVAVFYVLSYLPGLGLAMLGDPAAHRAKAEYLKVDYYAPRARPDSDSISRSPI*
Ga0105090_108149272	3300009075	Freshwater Sediment	IGCAVVWLVELPDRPMSVGQMAVFYVLSYLPGLGLAMLSDPAAHRAKAEYLKVDYYAPREDT*
Ga0105099_100252124	3300009082	Freshwater Sediment	VFEYRRTPYLGLVYAALIGCAVVWLVELPDRPMSAGQMAVFYVLSYLPGLGLAMLGDPAAHRAKARYLKVDYYAPREDT*
Ga0102851_101171632	3300009091	Freshwater Wetlands	VFTYRRTPYLGLVYAAAIGYAVTWLVATPDRSLTLVQQAIFYALSYLPGLGLAMLSDPASHRAKTDYLKVDFYAPKKTAGGD*
Ga0102851_101218642	3300009091	Freshwater Wetlands	VFQYRRTPYLGVIYGAAIGYAVTWLVEAPDRPMTVVQGALFYALSYLPGLGLAMLSDPASRKAKAEYLKVDYYAPKETTDPV*
Ga0102851_114664141	3300009091	Freshwater Wetlands	VFAYRRTPYLGVVYGALIGSATTWLLETPEAPLTFAQAAIFYALSCLPGLGLAMLGDPASRKAKAEFLQVDFYAPKELGDPVE*
Ga0102851_116647712	3300009091	Freshwater Wetlands	VFAYRRTPYLGLVYAAAIGCAVTWLVATPDRPLTLVQQAIFYALSYLPVLGLAMLSDPASRKAKTEYLKIDFYAPKELADGE*
Ga0102851_117869142	3300009091	Freshwater Wetlands	MFQYRRTPYLGVIYGAVIGYVVMWLVESPDRPLTFAQEAIFYALSCLPGLGLAMLGDPASRKAKAEYLKVDYYAPKETTYPV*
Ga0102851_123582632	3300009091	Freshwater Wetlands	VFHYRRTPYLGAIYGAAIGYAVMWLVEAPDRPMTVVQGALFYALSYLPGLGLAMLSDPASRNAKAEYLKVDYYAPKETTDPD*
Ga0102851_128516381	3300009091	Freshwater Wetlands	DYRRTPYLGLVYAAAIRFAVTYLIETPDRPLTLAQTVIFYVLSYLPGLGLAMLSDPASGRAKAEYLKVDYYAPKEPARPAE*
Ga0115026_100506813	3300009111	Wetland	VFEYRRTPYLGLVYAAAIGYAVTWLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPAPHKAKTEYLNVDYYAPTDTVDAAGGRATPKRGLSIR*
Ga0115026_101391333	3300009111	Wetland	GAAIGYAVTWLVEAPDRPMTVVQGALFYALSYLPGLGLAMLSDPASRKAKAEYLKVDYYAPKETTDPV*
Ga0115026_104031682	3300009111	Wetland	VFHYRRTPYLGAIYGAAIGYAVMWLVEAPDRPMTVVQGALFYTLSYLPGLGLAMLGDPASRKAKAEYLKVDYYAP
Ga0115026_107987032	3300009111	Wetland	VFDYRRTPYLGLVYAAAIGFAVTYLIETPDRPLTLAQTAIFYVLSYLPGLGLAMLSDPAPGRAKAEYLKVDYYAPKEPARPAE*
Ga0115027_101105553	3300009131	Wetland	VFEYRRTPFLGLLFGAAIGFVVTWLLESPERPLTIGQTLLFYVLSCLPGLGLAMLGDPAPQRAKAEYLEIDFYAPREPGGPAN*
Ga0115027_101430581	3300009131	Wetland	TPYLALVYAAVIGSAVVWLLEMTHRPLTVVQAAIFYVLSYLPGLGLAMLSDPAAHRAKAQYLQVDFYAPREDT*
Ga0115027_101683411	3300009131	Wetland	VFEYRRTPYLGLVFAAAIGFAVTWLLETPERPLTLAQAAIFYALSYLPGLGLAMLTDPAPRKAKAEYLKVDFYAPRDIGEAGE*
Ga0115027_107724351	3300009131	Wetland	VFEYRRTPYLGLIYAAAIGYAVTFLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPATRKAKAEYLKVDYYAPKDTVDAADGRATPNR
Ga0115027_108202331	3300009131	Wetland	LGLVYAAAIGYAVTWLVATPDRSLTLVQQAIFYALSYLPGLGLAMLSDPASHRAKTEYLKVDFYAPKKTAGGD*
Ga0113563_100423093	3300009167	Freshwater Wetlands	VFEYRRTPYLGLVFAAAIGFAVTWLLETPERPLTLAQAAIFYALSYLPGLGLAMLTDPAPRKAKAEYLKVDFYAPRDVGEAGE*
Ga0113563_100742232	3300009167	Freshwater Wetlands	VFAYRRTPYLGVVYGALIGSATTWLLETPEAPLTFAQAAIFYALSCLPGLGLAMLGDPASREAKAEFLQVDFYAPKELGDPAE*
Ga0113563_101953762	3300009167	Freshwater Wetlands	VFAYRRTPYLGLVYAAAIGCAVTWLVATPDRPLTLVQQAIFYALSYLPGLGLAMLSDPASHRAKTEYLKVDFYAPKKTAGGD*
Ga0113563_102367222	3300009167	Freshwater Wetlands	VFDYRRTPYLGLVYAAAIGFAVTYLIETLDRPLTLAQMAIFYVLSYLPGLGLAMLSDPAPGRAKAEYLKVDYYAPKEPARPAE*
Ga0113563_107826562	3300009167	Freshwater Wetlands	VFHYRRTPYLGAIYGAAIGYAVMWLVEAPDRPMTVVQGALFYALSYLPGLGLAMLSDPASRKAKAEYLKVDYYAPKETTDPV*
Ga0113563_110686202	3300009167	Freshwater Wetlands	VFTYRRTPYLGLVYAAAIGYAVTWLVATPDRSLTLVQQAIFYALSYLPGLGLAMLSDPASRRAKTEYLKVDFYAPKKTAGGD*
Ga0113563_114901051	3300009167	Freshwater Wetlands	VFEYRRTPYLGLVYAAAIGYAVTWLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPATRKAKAEY
Ga0113563_134868312	3300009167	Freshwater Wetlands	VFEYRRTPYLGLIYAAAIGYAVTFLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPATRKAKAEY
Ga0105096_100209562	3300009170	Freshwater Sediment	VFEYRRTPYLGLVYAALIGCAVVWLVELPDRPMSVGQMAVFYVLSYLPGLGLAMLGDPAAHRAKAEYLKVDYYAPRARPDSDSISRSPI*
Ga0115028_100312372	3300009179	Wetland	VFDYRRTPYLGLVYAAAIGFAVTYLIETPDRPLTLAQMAIFYVLSYLPGLGLAMLSDPAPGRAKAEYLKVDYYAPKEPARPAE*
Ga0115028_102167781	3300009179	Wetland	VFEYRRTPFLGLLFGAAIGFVVTWLLESPERPLTIGQTLLFYVLSCLPGLGLAMLGDPAPQRAKAEYLEIDFYAPREPGGPAD*
Ga0115028_106005862	3300009179	Wetland	VYGALIGSATTWLLETPEAPLTFAQAAIFYALSCLPGLGLAMLGDPASRKAKAEFLQVDFYAPKELGDPVE*
Ga0115028_116574692	3300009179	Wetland	YLGLVYAAAIGYAVTWLVATPDRSLTLVQQAIFYALSYLPGLGLAMLSDPASHRAKTEYLKVDFYAPKKTAGGD*
Ga0115028_118547271	3300009179	Wetland	VFEYRRTPYLGLVYAAVIGSAVVWLLEMTHRPLTVVQAAIFYVLSYLPGLGLAMLSDPAAHRAKAQYLQVDFYAPREDT*
Ga0114939_100526591	3300009455	Groundwater	MFDYRRTPYLGLVYAAVIGFAVTRLIETPDRPLTLVQTMIFYVLSYLPGLGLAMLGDPAPHRAKAEYLKVDFYAPKEPGEEAACR*
Ga0210334_108077821	3300021859	Estuarine	MFDYRRTPYLAVIYGAIIGYAVTWFVEVPARPLSALQTALFYALSYLPGLGLAMLGDPAARRAKTDYLKVDYYAPKKPAGGG
Ga0124853_11507562	3300024056	Freshwater Wetlands	VFEYRRTPYLGLIYAAAIGYAVTFLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPAPHKAKTEYLNVDYYAPTDTVDAAGGHATPKRGLSIR
Ga0209704_10656121	3300027693	Freshwater Sediment	VFEYRRTPYLGLVYAALIGCAVVWLVELPDRPMSVGQVAVFYVLSYLPGLGLAMLGDPAAHRAKAEYLKVDYYAPRARPDSDSISRSPI
Ga0209285_100148883	3300027726	Freshwater Sediment	VFEYRRTPYLGLVYAALIGCAVVWLVELPDRPMSAGQMAVFYVLSYLPGLGLAMLGDPAAHRAKARYLKVDYYAPREPT
Ga0209397_100641102	3300027871	Wetland	VFEYRRTPFLGLLFGAAIGFVVTWLLESPERPLTIGQTLLFYVLSCLPGLGLAMLGDPAPQRAKAEYLEIDFYAPREPGGPAN
Ga0209397_100647023	3300027871	Wetland	VFEYRRTPYLGLVYAAVIGSAVVWLLEMTHRPLTVVQAAIFYVLSYLPGLGLAMLSDPAAHRAKAQYLQVDFYAPREDT
Ga0209293_101475893	3300027877	Wetland	VFTYRRTPYLGLVYAAAIGYAVTWLVATPDRPLTLVQQAIFYALSYLPGLGLAMLSDPASHRAKTEYLKVDFYAPKKTAGGD
Ga0209293_101929642	3300027877	Wetland	GAAIGYAVTWLVEAPDRPMTVVQGALFYALSYLPGLGLAMLSDPASRKAKAEYLKVDYYAPKETTDPV
Ga0209450_101625553	3300027885	Freshwater Lake Sediment	VFEYRRTPFLGLLFGAAIGFVVTWLLESPERPLTIGQTLLFYVLSCLPGLGLAMLGDPAPQRAKAEYLEIDFYAPREPGGPAD
Ga0209450_102258642	3300027885	Freshwater Lake Sediment	VFEYRRTPYLGLVYAALIGCAVVWLVELPGRPMSVGQMAVFYVLSYLPGLGLAMLSDPAALRAKAEHLKVDYYAPREDS
Ga0209450_104549292	3300027885	Freshwater Lake Sediment	VFEYRRTPYLGVLYAVVIGYVVTSLLEAPDRPMTALQTLLFYAVSYPPGLGLAMLGDPAPRKAKTAYLKVDFYAPKDEARRAG
Ga0209496_103164382	3300027890	Wetland	VFTYRRTPYLGLVYAAAIGYAVTWLVATPDRSLTLVQQAIFYALSYLPGLGLAMLSDPASHRAKTEYLKVDFYAPKKTAGGD
Ga0209496_103664642	3300027890	Wetland	VFDYRRTPYLGLVYAAAIGFAVTYLIETPDRPLTLAQMAIFYVLSYLPGLGLAMLSDPAPGRAKAEYLKVDYYAPKEPARPAE
Ga0209496_107514652	3300027890	Wetland	VFAYRRTPYLGVVYGALIGSATTWLLETPEAPLTFAQAAIFYALSCLPGLGLAMLGDPASRKAKAEFLQVDFYAPKELGDPVE
Ga0209668_106017152	3300027899	Freshwater Lake Sediment	VFDYRRTPYLGLLYAAVIGFVVTWLLETPDRPMTVLQTLLFYALSYPPGLGLAMLGDPAPHRAKAAYLKVDF
Ga0209253_102498353	3300027900	Freshwater Lake Sediment	VFEYRRTPYLGLLYAVVIGYVVTWLLETPDRPMTLAQTLLFYVLSYLPGLGLAMLGDPAPHRAKAEYLKVDFYAPKDEARRAG
Ga0315292_102177682	3300032143	Sediment	VFDYRRTPFLGLLYAAVIGFVVTWLLETPDRPMTGLQTLLFYALSYPPGLGLAMLGDPAPRRAKAEYLKVDFYAPKDEARRAG
Ga0315295_103193533	3300032156	Sediment	VFDYKRTPYLGVACAIVIGTAVVVLVEEPGRPLGIVQMVLFYLLSYPPGLGLAMLSDPAPARTKAEYLKIDFYA
Ga0315283_103948223	3300032164	Sediment	VFDYRRTPFLGLLYAAVIGFVVTWLLETPDRPMTALQTLLFYALSYPPGLGLAMLGDPAPHRAKAEYLKVDFYAPKDEARRAG
Ga0316605_101055612	3300033408	Soil	VFAYRRTPYLGVVYGALIGSATTWLLETPEAPLTFAQAAIFYALSCLPGLGLAMLGDPASRKAKAEFLQVDFYAPKELGDPAE
Ga0316605_101074382	3300033408	Soil	VFAYRRTPYLGLVYAAAIGCAVTWLVATPDRPLTLVQQAIFYALSYLPGLGLAMLSDPASRKAKTEYLKIDFYAPKELADGE
Ga0316605_101976492	3300033408	Soil	VFEYRRTPFLGLLFGAAIGFVVTWLLESPERPLTIGQTLLFYVLSCLPGLGLAMLGDPAPQRAKAEYLEIDFYAPKEPGGPAN
Ga0316605_104998953	3300033408	Soil	AIGYAVTWLVATPDRPLTLVQQAIFYALSYLPGLGLAMLSDPASHRAKTEYLKVDFYAPKKTAGGD
Ga0316605_105143542	3300033408	Soil	VFEYRRTPYLGLVYAAAIGYAVTWLVETPDRPLTVVQAAIFYALSYLPGLGLAMLSDPAPRKAKAEYLKVDFYAPKEPAGGG
Ga0316605_111853032	3300033408	Soil	MFEYRRTPYLGLIYAAVIGYAITWFVETPDRPLTFVQELIFYTLSYAPGLGLAMLGDPAPRRAKTEYLKVDYYAPKEAADAD
Ga0316605_115188822	3300033408	Soil	MFQYRRTPYLGVIYGAVIGYVVMWLVESPDRPLTFAQEAIFYALSCLPGLGLAMLGDPASRKAKAEYLKVDYYAPKETTYPV
Ga0316605_117424332	3300033408	Soil	VFEYRRTPYLGVVYAAAIGYAVTWLVETPDRPLTVVQTAIFYALSYLPGLGLAMLSDPAPGKAKTEYLKVDFYAPREQADSD
Ga0316605_121769472	3300033408	Soil	VFQYRRTPYLGVIYGAAIGYAVTWLVEAPDRPMTVVQGALFYALSYLPGLGLAMLSDPASRKAKAEYLKVDYYAPKETTDPV
Ga0316603_101919133	3300033413	Soil	VFEYRRTPYLGLVYAAAIGYAVTWLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPATRKAKAEYLKVDYYAPKDTVDAADGRATPNRGPSFR
Ga0316603_102925292	3300033413	Soil	VFEYRRTPYLGLVYAAAIGYAVTWLVETPDRPLTVVQAAIFYALSYLPGLGLAMLSDPAPRKAKAEYLKVDFYAPKEPAGGD
Ga0316603_103195883	3300033413	Soil	VFAYRRTPFIAVIFAAVIGAVVIWLVEVPGRPMTLVQRALFFALSYLPGLGLAMLGDPAPRT
Ga0316603_105028162	3300033413	Soil	VFEYRRTPYLGLLFGAAIGFAVTWLLESPERPLTPVQTALFYALSCLPGLGLAMLGDPAPRRAKAEYLKVDFYAPSDPAD
Ga0316603_106939401	3300033413	Soil	YAVTWLVATPDRSLTLVQQAIFYALSYLPGLGLAMLSDPASHRAKTEYLKVDFYAPKKTAGGD
Ga0316603_122962682	3300033413	Soil	VFEYRRTPYLGLVYAALIGGTVVWLLEMPHRPLTLVQAAVFYVLSYLPGLGLAMLSDPAAHRAKAEYLKVDYYAPRGEP
Ga0316619_109933022	3300033414	Soil	LGLVYAAVIGSAVVWLLEMTHRPLTVVQAAIFYVLSYLPGLGLAMLSDPAAHRAKAQYLQVDFYAPREDT
Ga0316619_111927082	3300033414	Soil	VFEYRRTPFLGLLFGAAIGFVVTWLLESPERPLTIGQTLLFYVLSCLPGLGLAMLGDPAPQRAKAEYLEIDFYAPQEPGGPAN
Ga0316619_118798122	3300033414	Soil	VFHYRRTPYLGAIYGAAIGYAVMWLVEAPDRPMTVVQGALFYALSYLPGLGLAMLSDPASRNAKAEYLKVDYYAPKE
Ga0316622_1000435844	3300033416	Soil	VFEYRRTPYLGLIYAAAIGYAVTFLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPAPQKAKTEYLNVDYYAPTDTVDAAGGRATPKRGLSIR
Ga0316622_1000782604	3300033416	Soil	VFEYRRTPYLGLVYAGVIGFAVTQLIETPDRPLTLVQTMIFYVLSYLPGLGLAMLGDPAPHRAKAEYLKVDFYAPKEPGEEAACR
Ga0316622_1003973002	3300033416	Soil	MFQYRRTPYLGVIYGAVIGYVVMWLVESPDRPLTFAQEAIFYALSCLPGLGLAMLGDPASRKAKAEYLKVDYYAPKETTYPG
Ga0316622_1012049461	3300033416	Soil	FAAAIGFAVTWLLETPERPLTLAQAAIFYALSYLPGLGLAMLTDPAPRKAKAEYLKVDFYAPRDVGEAGE
Ga0316622_1017440162	3300033416	Soil	VFEYRRTPYLGLIYAAAIGYAVTWLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPAPHKAKTEYLNVDYYAPKDAADTID
Ga0316622_1025073471	3300033416	Soil	GLVYAAVIGFAATRLIETPDRPLTLVQTMIFYVLSYLPGLGLAMLGDPAPRRAKAEYLKVDFYAPKAPGEEAACR
Ga0316622_1025871911	3300033416	Soil	VFEYRRTPFLGLLFGAAIGFVVTWLLESPERPLTIGQTLLFYVLSCLPGLGLAMLGDPAPQRAKAEYLEIDFYAPREPGGPAT
Ga0316625_1008067812	3300033418	Soil	VFEYRRTPFLGLLFGAAIGFVVTWLLESPERPLTIGQTLLFYVLSCLPGLGLAMLGDPAPQRAKAEYLEIDFYAPKQPGGPAN
Ga0316625_1026123972	3300033418	Soil	VFEYRRTPYLGLIYAAAIGYAVTFLVETPDRPLAVVQEAIFYALSYLPGLGLAMLSDPAPQKAKTEYL
Ga0316601_1000436544	3300033419	Soil	VFEYRRTPYLGLVFAAAIGFAVTWLLETPERPLTLAQAAIFYALSYLPGLGLAMLTDPAPRKAKAEYLKVDFYAPRDVGEAGE
Ga0316601_1001099292	3300033419	Soil	VFQYRRTPYLGVIYGAAIGYAVMWLVEAPDRPMTVVQGALFYALSYLPGLGLAMLSDPASRKAKAEYLKVDYYAPKETTDPV
Ga0316601_1014722502	3300033419	Soil	VFDYRRTPYLGLVYAAAIGFAVTYLIETPDRPLTLAQTAIFYVLSYLPGLGLAMLSDPAPGRAKAEYLKIDYYAPKEPARPAE
Ga0316613_102719292	3300033434	Soil	VFHYRRTPYLGAVYGAAIGYAVMWLVEAPDRPMTVVQGALFYALSYLPGLGLAMLGDPASRKAKAEYLKVDYYAPKETTDPV
Ga0316620_125874211	3300033480	Soil	VFEYRRTPYLGLIYAAAIGYAVTFLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPATRKAKAEYLKVDYY
Ga0316629_107355192	3300033483	Soil	VFEYRRTPYLGLVYAAVIGSAVVWLLEMTHRPLTVVQAAIFYVLSYLPGLGLAMLSDPAAHRAKAQYL
Ga0316626_100239652	3300033485	Soil	VFEYRRTPYLGLIYAAAIGYAVTFLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPAPHKAKTEYLNVDYYAPTDTVDAAGGRATPKRGLSIR
Ga0316630_120076891	3300033487	Soil	VFEYRRTPYLGLIYAAAIGYAVTFLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPAPQKAKTEY
Ga0316621_102636492	3300033488	Soil	VFEYRRTPYLGLVFAAAIGFAVTWLLETPERPLTLAQAAIFYALSYLPGLGLAMLTDPAPRKAKAEYLKVDFYAPRDIGEAGE
Ga0316621_102829912	3300033488	Soil	VFQYRRTPYLGVIYGAAIGYAVTWLVEAPDRPMTVVQGALFYALSYLPGLGLAMLGDPASRNAKAEYLKVDYYAPKETTDPV
Ga0316621_104680732	3300033488	Soil	VFEYRRTPYLGLIYAAAIGYAVTFLVETPDRPLAVMQEAIFYALSYLPGLGLAMLSDPAPQKAKTEYLNVDYYAPTDTVDAAGGRATPRRGLSIR
Ga0316621_108433151	3300033488	Soil	VFEYRRTPYLGLLFGAAIGFAVTWLLESPARPLTPGQTALFYALSCLPGLGLAMLGDPAARRAKAEY
Ga0316628_1014892052	3300033513	Soil	VFQYRRTPYLGVIYGAAIGYVAMWLVEAPDRPMTVVQGALFYALSYLPGLGLAMLGDPASRKAKAEYLKVDYY
Ga0316616_1002240163	3300033521	Soil	VFAYRRTPYLGLVYAAAIGYAVTWLVATPDRPLTLVQQAIFYALSYLPGLGLAMLSDPASHRAKTEYLKVDFYAPKKTAGGD
Ga0316616_1012020212	3300033521	Soil	VFQYRRTPYLGVIYGAAIGYAVTWLVEAPDRPMTVVQGALFYALSYLPGLGLAMLSDPASRNAKAEYLKVDYYAPKET
Ga0316616_1020332742	3300033521	Soil	VFDYRRTPYLGLVYAAVIGFAVTWLIETPDRPLTLVQTMIFYVLSYLPGLGLAMLGDPAPNRAKAEYLKVDCYAPKEPVEEAACR
Ga0316616_1039773922	3300033521	Soil	VFEYRRTPYLGLLFGAAIGFAVTWLLESPARPLTPGQTALFYALSCLPGLGLAMLGDPAARRAKAEYLKVDFYAPREPAD
Ga0316617_1011553972	3300033557	Soil	VFAYRSTPYRGMLYAAVIGYAVIWLLEIPHRPLTPVQSAVFYVLSYLPGLGLAMLSDPAAHRAKAEYLKIDYYAPREDA
Ga0373891_020000_706_957	3300034054	Sediment Slurry	VFEYRRTPFLGVLFGAAIGFVVTWLLESPERPLTIGQTLLFYVLSCLPGLGLAMLGDPAPRRAKAEYLEIDFYAPKGPGGPAD
Ga0373899_007945_539_790	3300034077	Sediment Slurry	VFEYRRTPFLGVLFGAAIGFVVTWLLESPERPLTIGQTLLFYVLSCLPGLGLAMLGDPAPRRAKAEYLEIDFYAPKEPGGPAD
Ga0373899_058188_36_263	3300034077	Sediment Slurry	VFDYRRTPSLGLLFGAAIGFAVTWLVETPDRPLTLAQAVIFYALSCLPGLGIAMLCDPAPQRAKEEYLRVDFYAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080211

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences