3300033809: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_D

Overview

Basic Information

• IMG/M Taxon OID: 3300033809
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128997 | Gp0330728 | Ga0314871
• Sample Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_D
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 207938440
• Sequencing Scaffolds: 34
• Novel Protein Genes: 37
• Associated Families: 35

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
Not Available	17
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. DBS9H8	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Peatland Microbial Communities From Different Locations
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): tropical biome → peatland → peat soil
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.5438
  • Long. (^o): -74.6258
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001276	Metagenome / Metatranscriptome	733	Y
F001622	Metagenome / Metatranscriptome	662	Y
F003397	Metagenome / Metatranscriptome	489	Y
F006291	Metagenome / Metatranscriptome	377	Y
F007245	Metagenome / Metatranscriptome	355	Y
F008090	Metagenome / Metatranscriptome	339	Y
F008449	Metagenome	333	N
F009914	Metagenome / Metatranscriptome	311	Y
F012904	Metagenome / Metatranscriptome	276	Y
F014051	Metagenome	266	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0314871_000694	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1515
Ga0314871_000761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1480
Ga0314871_001197	All Organisms → cellular organisms → Bacteria	1319
Ga0314871_001889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1157
Ga0314871_002562	Not Available	1058
Ga0314871_002758	Not Available	1034
Ga0314871_005274	All Organisms → cellular organisms → Bacteria	840
Ga0314871_006372	Not Available	791
Ga0314871_007007	Not Available	767
Ga0314871_007524	Not Available	749

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0314871_000694	Ga0314871_000694_1344_1514	F008090	MRRKRIIYPFLFVALILIFSSCHPRYVSDIKPNMTKEEVVSLWGKTDLITFKNVDGR
Ga0314871_000761	Ga0314871_000761_506_715	F087703	MEVALMRILTIAIAVTFLGLPAATSAQACGNAGLHSAKAAAVDYSAATKKKKPSKPKEKVEYMRAAPMK
Ga0314871_001197	Ga0314871_001197_1187_1318	F014051	KNKIDAVASLMKKIGSIQPDKEPVTYDKFVDASVWKDANAMVK
Ga0314871_001889	Ga0314871_001889_3_209	F061030	NGGRIIPPPVGVKRHGLKLTPKEAAEGTKTLDGGRVAFPKYYERKGFKIHRSKALEGYLTCMHRNGRK
Ga0314871_002562	Ga0314871_002562_4_111	F012904	VTREHQRDNLRTALVLGSIALVFFLGIMLKYLLLK
Ga0314871_002758	Ga0314871_002758_35_556	F067154	VLVTSNYFAYLIGRKQVTYEELRKQVDRVVQLMDQKRAEEELALTTLKQRQERLEQHASGLTGLTTSTINGKTTATSEPPPAGRPLAAVLIDDTAIPPPDHEVRLQPPGSSLDAATKQRARHGVANQRGSRRQKVSPASAAPRRGPAEPAIAEQSGQLTTAVPATPQAGLAGQ
Ga0314871_005135	Ga0314871_005135_706_846	F044132	VSPFNTDNGQTTIKQGNSTFQFGQQRSFNERYNTNNLFDPYAREGR
Ga0314871_005274	Ga0314871_005274_687_824	F014051	MPRNKIEAVAALMKKIGSIKPDKEPVTYDAFVDGSVWKDANAMVK
Ga0314871_006372	Ga0314871_006372_3_287	F015418	MSVVSRRTFTKGLLASALVPANSAIGQPNDPGSIAIIDTPNNAAKVAAKLSAANVKVVVRFFARRPQPGLREKVMASDGNMVDGVREPTILIRNG
Ga0314871_007007	Ga0314871_007007_635_766	F061134	AAPGKKEELKPGAQIIIFGWDKQTDGSVLAKTLYIGRAGPPAM
Ga0314871_007524	Ga0314871_007524_341_547	F066674	VSTSSDLALLSSLGTQLDELGARITEMAERYGTTPDSALANELYTAERSLIGATRALDRARGHLQGMG
Ga0314871_007766	Ga0314871_007766_213_404	F078547	MPQHENADRARAERLFKAREDQKADAPKATADYYAAIDRVRIRTQELRRLRLERAAQNKLRSA
Ga0314871_008147	Ga0314871_008147_433_540	F049779	LNQQKDQFRAAYDAGRQAYHEATAEGGTSSAAKNL
Ga0314871_008318	Ga0314871_008318_487_723	F084792	MWGGNGMTMKKLVVCTIVLGLLSGPVLAQQSRSDDPLIIKERDKQQQAEALDKQYKRTLDQTRKESDSPTRNDPWANMR
Ga0314871_008557	Ga0314871_008557_145_717	F015138	LREFHLLLRAHRLYDESHPSVLDSLDTAYDSLKRIANDLDGVEVRVERGGIVVAKVSEGHLSDARGEFHALANDLQRVGIQTLYFAAKFHVGELDTLAQLIKGTLLRSEEASRRTTKNWWPAQLRERRVEGIQINTLTERKVDTVLASLIAALVAYGGNAPQEDGDTPIRAPQIEELTDTLRLIGHLTPPM
Ga0314871_008866	Ga0314871_008866_209_601	F008449	MVTVQTAYGFNITVHPAYAGKFQKFFALLKERGYKVPANITKCWAPHGTHVAGSNHYIGAACDIQTGWNRGPQFVYHMNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0314871_010063	Ga0314871_010063_375_680	F023224	MALQAPISLSGQDRQKQVFNLMPAKATNLNRHGAAVQLHRELLVGSRIAVKNQRGTMVAARVVAQLAALQGVPTYAIEFVDQDENAKNFWGISFPSSNTEQ
Ga0314871_010078	Ga0314871_010078_217_657	F006291	MFGKDLRLQFYTLRKGFADEPEQATYKWDGERYIHDSGGMNDVTAFTVHRLEGRTFVIQSVAAKRPNIIEYAVAHELTGGVYQVTTIDENDADGATRARNCQRVDDSRRRIATGKQLIAFARATDAKQKDEGGLVLRLANSPETAR
Ga0314871_010289	Ga0314871_010289_510_677	F087703	IAVSFLALPVAGPAQACGAGHSAKAATADYSAATKKKKPKQPKEKVEYMRAAPMK
Ga0314871_011820	Ga0314871_011820_443_649	F026346	SAAAHRAGAIVVETDKKGRCEERHFDNRTGKIVSSNFVDCDVRLERDTTPSEAINSERIRTILGAFKR
Ga0314871_012794	Ga0314871_012794_54_257	F003397	MEAFNADHATGYTGVTLTKLQQSYDAGIKNVQIVRANITSYCIQNTSPGTVTYHKGGPSGDIVSGVC
Ga0314871_013674	Ga0314871_013674_1_201	F104619	MHKSPSQIARSLRAFRNAQRLGLLRGVRILPGPNPCEAVVGQFGSEYPGNTVPRLPLLRCTLNRCEC
Ga0314871_014169	Ga0314871_014169_425_613	F058362	MKHAYAWGAILVIVLASVTGDVLLARAMKQVGDVGQLRRRSGFLTVASRILTNPWFLLGTIAM
Ga0314871_014543	Ga0314871_014543_414_608	F097009	GGEECDPWDELRALQAQLAGRARWDGQPAPLVRPGPRVAYVEEAREERWSPLAERVRELLCSAS
Ga0314871_015384	Ga0314871_015384_249_395	F033176	MDPKIALLFVLIGTVIVLSHLSDENLGRVRRQLAAGRWREIVPRRRRA
Ga0314871_017028	Ga0314871_017028_468_578	F086002	MRELVGKIPTKDPNIVEVVYRAEIVRCLECQKTVPMG
Ga0314871_017102	Ga0314871_017102_220_510	F034317	VIKTHLRDLRDYLREYWGHASQSFARKALMACLWFAGMFIPLGLKTIVDLPQWAAVTWMISWAAVGCLFAPFGLWKTQRKKFAELQGRAQPSRDTK
Ga0314871_019924	Ga0314871_019924_2_532	F001276	MRRNLITRRIGVAALLLAPLLALIGMAGSATGYPVQYCAQVPIVGGIPPWGFHTGSPITGATGSYARGHGDINLAANTVSGILCQADRVRHNPDRLIIMTVGHHLIYHSHHAVMWGVPGNIMKIIVRVKSSTDPACKVGTQGRVTLFASYNGVRSDSVQFIFPAACKGHDHLYHGPQ
Ga0314871_020827	Ga0314871_020827_3_380	F062098	TKIFVQKFRYHGVPSTLPSGVHEFLFQNQESFPITHEMIPIALPEGKTAQDVIDGAKTNGPSDEDNWLHIGGDFGAVDTGAGIIEWLNLPPGTYAFACWQTGTQSGGDNGPPHASIGMVAQFTVT
Ga0314871_020856	Ga0314871_020856_30_449	F065901	VAPDGRWSVGEFRIVHAPSLHFLKERLVFDDSGAYLVQGGVRMPVAVEGPPFEVVELRLVPDAGEALVVLDDGSTESLGPDSLTTDAATGRAECTARGGRARAAFSRAAHQALLQHVEEDGGRYFLRVGERRLPIRAAA
Ga0314871_020962	Ga0314871_020962_303_545	F090896	MATEQTPLEPDLREPRRRSREFNALLWLGGWGGAAAIALTALAIASQTKTAGDRLRQVFSINEPAAIAQMPPRVSQLESDV
Ga0314871_021467	Ga0314871_021467_3_206	F009914	LALLKMAADQWPSSEVGEVSQSELFRRDQALLKMWPEACRRVGIEAREFPRGVIKRWQLEMCRGRPH
Ga0314871_023116	Ga0314871_023116_410_529	F087688	DKKLLLEIIANEKKWIAEKEGARDPFATIGEPRKSAINL
Ga0314871_023664	Ga0314871_023664_385_510	F001622	LRAQTGADVRELVAGAQLASNGGPNVPRWRMAGVVGALVSE
Ga0314871_024260	Ga0314871_024260_2_523	F007245	PEEIEGFTLNDSTNFEKIKPGDGYGLDYSQSGWKLDVFIYDLKRAAIPDDPKSAIVRAEFERARADAFLAQPRGLYAQVYLRRNFTIDDAAKRTRFQCAAFHLTRDGAKPQDGYLCVTAWNNKFVKLRLTTLSDTNTETNARKYVNAWIPVLWGGGSSRAEQTKPEPEPRRASP
Ga0314871_024386	Ga0314871_024386_338_523	F083194	IYNAPRPEVVPGFLTVGTAKRNVVTGAFGRNWDWSNRSSKHIAFDLRGPKTFSWRQSLQT
Ga0314871_024718	Ga0314871_024718_43_462	F070473	MRKLLLALVLAVVAVGVPTAGAAAVSPTVRLTIVHVVKGCHSWGTALSQPLGPTRTVTVKPGTALQIRDNCPMSFDLVQTAGPALALGDPTMQPGTLRTIVFAKRGVYRLQATNVESSEQMGMTTIGADNTLVLVVRAR