Metagenome / Metatranscriptome Family F061134

Basic Information
Family ID	F061134
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	44 residues
Representative Sequence	PGNKDELKPGAQIIIMASDKQPDGSVLAKTLYVGRSLTPAM
Number of Associated Samples	116
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.48 %
% of genes from short scaffolds (< 2000 bps)	96.97 %
Associated GOLD sequencing projects	110
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Most Common Taxonomy
Group	Bacteria (64.394 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (9.091 % of family members)
Environment Ontology (ENVO)	Unclassified (36.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.909 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.35% β-sheet: 24.64% Coil/Unstructured: 71.01%
Feature Viewer

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Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF14579	HHH_6	11.36
PF01336	tRNA_anti-codon	10.61
PF02566	OsmC	2.27
PF02736	Myosin_N	0.76
PF12146	Hydrolase_4	0.76
PF00528	BPD_transp_1	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	2.27
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	2.27

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.39 %
Unclassified	root	N/A	35.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.39 %
Unclassified	root	N/A	35.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.39 %
Unclassified	root	N/A	35.61 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	64.39 %
Unclassified	root	N/A	35.61 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	56.06 %
Unclassified	root	N/A	35.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	32.58 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.61 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.79 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3.03 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.61 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	12.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.79 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	3.03 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.79 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	3.03 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.27 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.76 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.79 %
Pseudolabrys sp. FHR47	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	3.03 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	1.52 %
Rhizobium freirei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei	0.76 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.76 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.79 %
Pseudolabrys sp. FHR47	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	3.03 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	1.52 %
Rhizobium freirei PRF 81	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	0.76 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.76 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908040\|B4_c_ConsensusfromContig129954	Not Available	873	Open in IMG/M
2170459014\|G1P06HT01ARGEX	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100797167	Not Available	964	Open in IMG/M
3300000443\|F12B_10600611	All Organisms → cellular organisms → Bacteria → Proteobacteria	772	Open in IMG/M
3300000787\|JGI11643J11755_11659834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	542	Open in IMG/M
3300000891\|JGI10214J12806_10675298	Not Available	762	Open in IMG/M
3300004479\|Ga0062595_100386678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	995	Open in IMG/M
3300004479\|Ga0062595_100770879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	786	Open in IMG/M
3300005205\|Ga0068999_10140312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	507	Open in IMG/M
3300005332\|Ga0066388_102767501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	896	Open in IMG/M
3300005334\|Ga0068869_100261465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1385	Open in IMG/M
3300005337\|Ga0070682_100407788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1030	Open in IMG/M
3300005339\|Ga0070660_101896834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	508	Open in IMG/M
3300005364\|Ga0070673_102288574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	514	Open in IMG/M
3300005434\|Ga0070709_10244644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1289	Open in IMG/M
3300005434\|Ga0070709_10930645	All Organisms → cellular organisms → Bacteria → Proteobacteria	689	Open in IMG/M
3300005454\|Ga0066687_10595766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	656	Open in IMG/M
3300005458\|Ga0070681_11362519	Not Available	633	Open in IMG/M
3300005459\|Ga0068867_101061536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	737	Open in IMG/M
3300005544\|Ga0070686_101299085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	608	Open in IMG/M
3300005563\|Ga0068855_101649747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	655	Open in IMG/M
3300005563\|Ga0068855_101692817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	645	Open in IMG/M
3300005564\|Ga0070664_100366003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1314	Open in IMG/M
3300005564\|Ga0070664_102255815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	516	Open in IMG/M
3300005614\|Ga0068856_101799877	Not Available	624	Open in IMG/M
3300005617\|Ga0068859_100457319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1372	Open in IMG/M
3300005618\|Ga0068864_102445582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	528	Open in IMG/M
3300006086\|Ga0075019_10831160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	590	Open in IMG/M
3300006175\|Ga0070712_100243072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1435	Open in IMG/M
3300006354\|Ga0075021_11169285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	505	Open in IMG/M
3300006575\|Ga0074053_10018351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1906	Open in IMG/M
3300006578\|Ga0074059_11621755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	715	Open in IMG/M
3300006755\|Ga0079222_12622677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300006797\|Ga0066659_10480133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	993	Open in IMG/M
3300006852\|Ga0075433_10594553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	972	Open in IMG/M
3300006903\|Ga0075426_10361580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1068	Open in IMG/M
3300006914\|Ga0075436_100240405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1288	Open in IMG/M
3300009011\|Ga0105251_10134615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1119	Open in IMG/M
3300009029\|Ga0066793_10400104	Not Available	789	Open in IMG/M
3300009101\|Ga0105247_10368024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1016	Open in IMG/M
3300009168\|Ga0105104_10795614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300009545\|Ga0105237_10311329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1578	Open in IMG/M
3300009649\|Ga0105855_1221031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	575	Open in IMG/M
3300009839\|Ga0116223_10573066	Not Available	653	Open in IMG/M
3300010043\|Ga0126380_11958772	Not Available	535	Open in IMG/M
3300010358\|Ga0126370_10104155	All Organisms → cellular organisms → Bacteria → Proteobacteria	1970	Open in IMG/M
3300010358\|Ga0126370_11937565	Not Available	574	Open in IMG/M
3300010359\|Ga0126376_10923235	Not Available	865	Open in IMG/M
3300010359\|Ga0126376_12232925	Not Available	592	Open in IMG/M
3300010366\|Ga0126379_10293570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1627	Open in IMG/M
3300010371\|Ga0134125_11014608	Not Available	910	Open in IMG/M
3300010371\|Ga0134125_11940951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	640	Open in IMG/M
3300010375\|Ga0105239_13291316	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300010379\|Ga0136449_103266753	Not Available	624	Open in IMG/M
3300011119\|Ga0105246_11411158	Not Available	650	Open in IMG/M
3300011414\|Ga0137442_1113971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	593	Open in IMG/M
3300012362\|Ga0137361_11769769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	536	Open in IMG/M
3300012476\|Ga0157344_1027316	Not Available	529	Open in IMG/M
3300012912\|Ga0157306_10062445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	974	Open in IMG/M
3300012960\|Ga0164301_11465923	Not Available	561	Open in IMG/M
3300012984\|Ga0164309_10498914	Not Available	931	Open in IMG/M
3300012984\|Ga0164309_10647344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	832	Open in IMG/M
3300012984\|Ga0164309_11896857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	511	Open in IMG/M
3300012985\|Ga0164308_11784913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300012987\|Ga0164307_11309832	Not Available	606	Open in IMG/M
3300012987\|Ga0164307_11472238	All Organisms → cellular organisms → Bacteria → Proteobacteria	575	Open in IMG/M
3300013100\|Ga0157373_10894798	Not Available	658	Open in IMG/M
3300013297\|Ga0157378_10522215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1189	Open in IMG/M
3300013307\|Ga0157372_10556066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1338	Open in IMG/M
3300013307\|Ga0157372_13218571	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300014325\|Ga0163163_10475114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1311	Open in IMG/M
3300014326\|Ga0157380_11551436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	717	Open in IMG/M
3300014968\|Ga0157379_11328269	Not Available	695	Open in IMG/M
3300014968\|Ga0157379_12293579	Not Available	537	Open in IMG/M
3300015171\|Ga0167648_1009596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2420	Open in IMG/M
3300015245\|Ga0137409_11274320	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300015372\|Ga0132256_101116534	Not Available	903	Open in IMG/M
3300015372\|Ga0132256_103455006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	531	Open in IMG/M
3300016422\|Ga0182039_11652206	Not Available	585	Open in IMG/M
3300016445\|Ga0182038_10000924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15287	Open in IMG/M
3300017930\|Ga0187825_10112554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	947	Open in IMG/M
3300017947\|Ga0187785_10528609	All Organisms → cellular organisms → Bacteria → Proteobacteria	593	Open in IMG/M
3300018029\|Ga0187787_10208051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	695	Open in IMG/M
3300018060\|Ga0187765_11032932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	566	Open in IMG/M
3300018083\|Ga0184628_10356638	Not Available	767	Open in IMG/M
3300018089\|Ga0187774_10455099	Not Available	794	Open in IMG/M
3300020069\|Ga0197907_10849734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300021560\|Ga0126371_10991098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	982	Open in IMG/M
3300025315\|Ga0207697_10078047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1393	Open in IMG/M
3300025475\|Ga0208478_1044849	Not Available	845	Open in IMG/M
3300025735\|Ga0207713_1215159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300025852\|Ga0209124_10231188	Not Available	719	Open in IMG/M
3300025891\|Ga0209585_10463250	Not Available	524	Open in IMG/M
3300025906\|Ga0207699_10272321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1174	Open in IMG/M
3300025912\|Ga0207707_11048312	Not Available	667	Open in IMG/M
3300025912\|Ga0207707_11216386	Not Available	609	Open in IMG/M
3300025919\|Ga0207657_11500890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	504	Open in IMG/M
3300025925\|Ga0207650_10732354	Not Available	836	Open in IMG/M
3300025928\|Ga0207700_11319856	Not Available	643	Open in IMG/M
3300025936\|Ga0207670_10194202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1538	Open in IMG/M
3300025949\|Ga0207667_10221892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1936	Open in IMG/M
3300025949\|Ga0207667_10322098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1579	Open in IMG/M
3300026041\|Ga0207639_10461861	Not Available	1154	Open in IMG/M
3300026067\|Ga0207678_11159918	Not Available	684	Open in IMG/M
3300026116\|Ga0207674_11311792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	693	Open in IMG/M
3300026745\|Ga0207576_100199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1646	Open in IMG/M
3300026809\|Ga0207820_105192	Not Available	1117	Open in IMG/M
3300026849\|Ga0207804_115086	Not Available	700	Open in IMG/M
3300026942\|Ga0207783_1013004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	829	Open in IMG/M
3300027330\|Ga0207777_1037895	Not Available	872	Open in IMG/M
3300027765\|Ga0209073_10335880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300027876\|Ga0209974_10030607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1784	Open in IMG/M
3300027902\|Ga0209048_10561653	Not Available	764	Open in IMG/M
3300028793\|Ga0307299_10225417	Not Available	704	Open in IMG/M
3300031226\|Ga0307497_10014497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	2314	Open in IMG/M
3300031232\|Ga0302323_103333346	Not Available	511	Open in IMG/M
3300031247\|Ga0265340_10424928	All Organisms → cellular organisms → Bacteria → Proteobacteria	586	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1135710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300031421\|Ga0308194_10102505	All Organisms → cellular organisms → Bacteria → Proteobacteria	825	Open in IMG/M
3300031446\|Ga0170820_17369665	Not Available	830	Open in IMG/M
3300031474\|Ga0170818_111637522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1148	Open in IMG/M
3300031668\|Ga0318542_10409534	Not Available	701	Open in IMG/M
3300031746\|Ga0315293_10806858	Not Available	687	Open in IMG/M
3300031938\|Ga0308175_101132585	Not Available	868	Open in IMG/M
3300032211\|Ga0310896_10229241	Not Available	929	Open in IMG/M
3300032892\|Ga0335081_10774244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	1151	Open in IMG/M
3300033475\|Ga0310811_10327404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1739	Open in IMG/M
3300033489\|Ga0299912_10311977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1315	Open in IMG/M
3300033809\|Ga0314871_007007	Not Available	767	Open in IMG/M
3300034125\|Ga0370484_0086267	Not Available	810	Open in IMG/M
3300034125\|Ga0370484_0238615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
3300034818\|Ga0373950_0000978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3619	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.42%
Host-Associated	Host-Associated	31.82%
Engineered	Engineered	0.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.61%
Plants	Host-Associated → Plants	31.82%
Aquatic	Environmental → Aquatic	6.82%
Solid Waste	Engineered → Solid Waste	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.61%
Freshwater	Environmental → Aquatic → Freshwater	3.03%
Sediment	Environmental → Aquatic → Sediment	3.03%
Marine	Environmental → Aquatic → Marine	0.76%
Peat	Environmental → Terrestrial → Peat	0.76%
Roots	Host-Associated → Plants → Roots	0.76%
Grass	Engineered → Solid Waste → Grass	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.64%
Loam	Environmental → Terrestrial → Soil → Loam	12.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.12%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.58%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.03%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.76%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.76%
Lake	Environmental → Aquatic → Freshwater → Lake	0.76%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.76%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.76%
Sand	Environmental → Terrestrial → Soil → Sand	0.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.76%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.76%
Composting	Engineered → Solid Waste → Grass → Composting	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.12%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.06%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.03%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.03%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.52%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.52%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.76%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.76%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.76%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.76%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.76%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.76%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.76%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.76%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.76%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.30%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.79%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.03%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.27%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.27%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.27%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.52%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.52%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.52%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.52%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.52%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.52%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.76%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.76%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.76%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.76%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.76%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.76%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.76%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.76%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.76%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.76%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.76%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.76%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908040	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Bog Site B4	Environmental	Open in IMG/M
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009649	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011414	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015171	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3a, vegetated patch on medial moraine)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025475	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025735	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025852	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-22A (SPAdes)	Environmental	Open in IMG/M
3300025891	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026745	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08K1-12 (SPAdes)	Environmental	Open in IMG/M
3300026809	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 47 (SPAdes)	Environmental	Open in IMG/M
3300026849	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46 (SPAdes)	Environmental	Open in IMG/M
3300026942	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 63 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033809	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_D	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
B4_c_05252930	2124908040	Soil	XXLXAGTPIIIMASEKQAXXSVLAXTXYXGRXXPPXM
2PV_02980310	2170459014	Switchgrass, Maize And Mischanthus Litter	MIAAAAPGKKDELKAGAQIIISVGQAAGWIDTGQAMYVGRSVAPAM
INPhiseqgaiiFebDRAFT_1007971671	3300000364	Soil	NKEELKPGAQIIIMASDKQPDGSVLAKTLYIGRNLTPAM*
F12B_106006113	3300000443	Soil	GNKEELKPGAQIIIMASDKQSDGSVLAKTLYIGRSLTPAM*
JGI11643J11755_116598342	3300000787	Soil	ITAVAPGNKEELKPGAQIIIMASDKQSDGSVLAKTLYIGRSLTPAM*
JGI10214J12806_106752982	3300000891	Soil	IKAGTPIIIFGWDKQPDGSVLAKSLYIGRSVTPAM*
Ga0062595_1003866783	3300004479	Soil	VTPQTIIAAAAPAKKEEIKAGTPMIIFGWDKQPDGSVLAKTLYIGRNVTPAM*
Ga0062595_1007708792	3300004479	Soil	TIAAAAPGNKDELKSGAQIIIFGWDKQPDGSILAKTLYVGRSVTPAM*
Ga0068999_101403121	3300005205	Natural And Restored Wetlands	APGNKSELKPGTPIIIFASEKQPDGSVLAKTMYIGRDVTPAM*
Ga0066388_1027675011	3300005332	Tropical Forest Soil	AITAVAPGNKDELMPGAQIIIMASDKQADGSVLAKTLYIGRSLTPAM*
Ga0068869_1002614652	3300005334	Miscanthus Rhizosphere	PGNKDELKTGAQIIIFGWDKQADGSILAKSLYIGRSVTPAM*
Ga0070682_1004077881	3300005337	Corn Rhizosphere	AKKEEIKAGTPIIIFGWDKQPDGSVLAKSLYVGRSVTPAM*
Ga0070660_1018968341	3300005339	Corn Rhizosphere	RAAPGSKDELKAGAQIIIFASAKEGDTTVAKVLYVGRGVTPAM*
Ga0070673_1022885742	3300005364	Switchgrass Rhizosphere	AKKEEIKAGTPIIIFGWDKQPDGSVLAKSLYIGRNVTPAM*
Ga0070709_102446441	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	AITAVAPGNKDELKPGAQIIIMAADKQPDGSVLAKTLYIGRSLTPAM*
Ga0070709_109306452	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GNKDELKAGTQIIIMASEKQPDGSALAKVLYVGRGLTPAM*
Ga0066687_105957662	3300005454	Soil	AVAPVNKDELKAGAQIIIFASDKQPDGSVLVKSMYVGRGVTPAM*
Ga0070681_113625192	3300005458	Corn Rhizosphere	AKKEEIKAGTPIIIFGWDKQPDGSVLAKSLYIGRSVTPAM*
Ga0068867_1010615361	3300005459	Miscanthus Rhizosphere	KVIVTPQTIIAAAAPAKKEEIKAGTPMIIFGWDKQPDGSVLAKSLYVGRSVTPAM*
Ga0070686_1012990852	3300005544	Switchgrass Rhizosphere	NKDELKPGAQIIIMAADKQPDGSVLAKTLYIGRSLTPAM*
Ga0068855_1016497472	3300005563	Corn Rhizosphere	DASELKPGAQVIIFGWDKQADGSILAKTMYVGRGLTPAM*
Ga0068855_1016928171	3300005563	Corn Rhizosphere	VIAAVAKGDKKELKKGAHILIFQSEKQAGGSLLAKVLYVGRDVVPAM*
Ga0070664_1003660031	3300005564	Corn Rhizosphere	GKKDELKAGAQIIIFGWDKQPDGSILAKTMYVGRSVAPAM*
Ga0070664_1022558151	3300005564	Corn Rhizosphere	TAVAPGNKDELKPGAQIIIMAADKQPDGSVLAKTLYIGRSLTPAM*
Ga0068856_1017998771	3300005614	Corn Rhizosphere	KAGAQIIIFGWDKQPDGSILAKTLYVGRGLTPAM*
Ga0068859_1004573192	3300005617	Switchgrass Rhizosphere	AAPGKKDELKAGLQIIIFGWDKQPDGSILAKTMYVGRSVAPAM*
Ga0068864_1024455821	3300005618	Switchgrass Rhizosphere	AVAPGNKDELKPGAQIIIMAADKQPDGSVLAKTLYIGRSLTPAM*
Ga0075019_108311601	3300006086	Watersheds	VVTKDTVIAAAAAGNKDELKAGAQIIIFGWDKQADGSVLAKVMYVGRGLTPAM*
Ga0070712_1002430721	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	APGKKEELKPGAQIIIFGWDKQADGTVLAKTLYVGRAGPPAM*
Ga0075021_111692852	3300006354	Watersheds	AAAAPAKKEELKPGAQIIIFVWDKQPDGSVLAKVLYVGRNVTPAM*
Ga0074053_100183512	3300006575	Soil	IAAAAPGKKDELKAGAQIIIFGWDKQPDGSILAKTMYVGRSVAPAM*
Ga0074059_116217551	3300006578	Soil	KVIVTPQTIIAAAAPGKKEEIKAGTPIIIFGWDKQPDGSILAKTMYVGRSVAPAM*
Ga0079222_126226771	3300006755	Agricultural Soil	DAVIQAVAPGNKDELKAGAQIIIMQSEKQADGSYLAKNVYVGRGLTPAM*
Ga0066659_104801331	3300006797	Soil	KPGAQIIIMASEKQADGSILAKNMYVGRGVTPAM*
Ga0075433_105945531	3300006852	Populus Rhizosphere	VTPQTVIAAAAPAKKEEIKAGTPIIIFGWDKQPDGSVLAKSLYVGRSVTPAM*
Ga0075426_103615803	3300006903	Populus Rhizosphere	ELKAGAQIIIMASEKQADGSVLAKTLYVGRGLTPAM*
Ga0075436_1002404051	3300006914	Populus Rhizosphere	AAKGDKSELKPGVQIIIFGWEKLPDGAVLAKTLYVGRGLTPAM*
Ga0105251_101346152	3300009011	Switchgrass Rhizosphere	DELKAGAQIIIFGWDKQPDGSILAKTMYVGRSVAPAM*
Ga0066793_104001041	3300009029	Prmafrost Soil	SKDELKPGAQIIIFGWDKQSDGSVLAKVMYVGRNVTPAM*
Ga0105247_103680241	3300009101	Switchgrass Rhizosphere	QTVIAAAAPAKKEEIKAGTPIIIFGWDKQPDGSVLAKSLYVGRSVTPAM*
Ga0105104_107956142	3300009168	Freshwater Sediment	GNKDELKPGEQIIIMASDKQADGSVLAKTLYIGRSLTPAM*
Ga0105237_103113291	3300009545	Corn Rhizosphere	KPGTQIIIMAADKQPDGSVLVKTLYVGRSLTPAM*
Ga0105855_12210312	3300009649	Permafrost Soil	VIAAVAPGNKDDLKPGTQIIIMASDKQPDGSVLAKTLYVGRSLTPAM*
Ga0116223_105730661	3300009839	Peatlands Soil	AAAPGSKDELKAGTQIIIFGWDKQPDGSVLAKVMYIGRNVTPAM*
Ga0126380_119587722	3300010043	Tropical Forest Soil	DKAELKVGAQIIIMQSEKQPDGSVLGKNLYIGRGVTPAM*
Ga0126370_101041551	3300010358	Tropical Forest Soil	QAVAPGNKDELKAGAQIIIMQSEKQADGSFLAKNVYVGRGLTPAM*
Ga0126370_119375651	3300010358	Tropical Forest Soil	ELKAGAQIIIFGWDKQADGSVLAKTLYVGRAGPPAM*
Ga0126376_109232351	3300010359	Tropical Forest Soil	KKEEIKAGTPIILFGWDKQPDGSVLAKTLYIGRSVAPAM*
Ga0126376_122329251	3300010359	Tropical Forest Soil	ELKPGTQVIIMASDKQPDGSVLAKTLYIGRGLTPAM*
Ga0126379_102935703	3300010366	Tropical Forest Soil	PGNKDELKPGAQIIIMASDKQPDGSVLAKTLYVGRSLTPAM*
Ga0134125_110146083	3300010371	Terrestrial Soil	IKAGTPIIIFGWDKQPDGSVLAKSLYIGRSVPPAM*
Ga0134125_119409511	3300010371	Terrestrial Soil	KTGAQIIIFGWDKQADGSILAKSLYIGRSVTPAM*
Ga0105239_132913162	3300010375	Corn Rhizosphere	VTPQTVIAAAAPAKKEEIKAGTPIIIFGWDKQADGWVLAKTLYIGRNVAPAM*
Ga0136449_1032667532	3300010379	Peatlands Soil	LVAGTPIIIMASEKQTDGSVLAKVLYVGRAGPPAM*
Ga0105246_114111581	3300011119	Miscanthus Rhizosphere	LKPGAQIIIMAADKQPDGSVLAKTLYIGRSLTPAM*
Ga0137442_11139711	3300011414	Soil	LKAGTQIIIFGWDKQSDGSVLAKVMYVGRNVTPAM*
Ga0137361_117697691	3300012362	Vadose Zone Soil	SKDELKPGAQIIIMASEKQADGSILAKNMYVGRGVTPAM*
Ga0157344_10273161	3300012476	Arabidopsis Rhizosphere	APANKDELKPGTQIIIMAADKQPDGSVLAKTLYVGRSLTPAM*
Ga0157306_100624452	3300012912	Soil	KVIVTPQTVIAAAAPAKKEEIKAGTPIIIFGWDKQPDGSVLAKSLYVGRSVTPAM*
Ga0164301_114659231	3300012960	Soil	VVAVSIKDELKPGTQIIIMAADKQPDGSVLAKTLYVGRSLTPAM*
Ga0164309_104989142	3300012984	Soil	QTVIAAAAPGKKEELKPGAQIIIFGWDKQADGTVLAKTLYVGRAGPPAM*
Ga0164309_106473441	3300012984	Soil	DKSELKPGVQIIIFGWEKLPDGVVLAKTLYVGRGLTPAM*
Ga0164309_118968572	3300012984	Soil	VTPQTAIARAAPGSKDELKAGAQIIIFASAKEGDTTVAKVLYVGRGVTPAM*
Ga0164308_117849131	3300012985	Soil	AIAAAAKGDKSELKPGVQIIIFGWEKLPDGAVLAKTLYVGRGLTPAM*
Ga0164307_113098321	3300012987	Soil	APGNKDELKSGAQIIIFGWDKQPDGSILAKTLYVGRSVTPAM*
Ga0164307_114722382	3300012987	Soil	PQTAIARAAPGSKDELKAGAQIIIFASAKEGDTTVAKVLYVGRGVTPAM*
Ga0157373_108947982	3300013100	Corn Rhizosphere	AAKGDASELKAGAQIIIFGWDKQADGSVLAKTMYVGRGVTPAM*
Ga0157378_105222151	3300013297	Miscanthus Rhizosphere	TAITAVAPGNKDELKPGAQIIIMAADKQPDGSVLAKTLYVGRSLTPAM*
Ga0157372_105560661	3300013307	Corn Rhizosphere	QGRREEGCGHAQTMIAAAAPGKKDELKAGAQIIIFGWDKQPDGSILAKTMYVGRSVAPAM
Ga0157372_132185712	3300013307	Corn Rhizosphere	AITAVAPANKDELKPGTQIIIMAADKQSDGSVLAKTLYVGRSLTPAM*
Ga0163163_104751143	3300014325	Switchgrass Rhizosphere	ATAITAVAPGNKDELKPGAQIIIMAADKQPDGSVLAKTLYIGRSLTPAM*
Ga0157380_115514361	3300014326	Switchgrass Rhizosphere	AAAPAKKEEIKAGTPIIIFGWDKQPDGSVLAKSLYVGRSVTPAM*
Ga0157379_113282691	3300014968	Switchgrass Rhizosphere	APAKKEEIKAGTPIIIFGWDKQADGSVLAKTLYIGRNVAPAM*
Ga0157379_122935791	3300014968	Switchgrass Rhizosphere	TAITAVAPGNKDELKPGAQIIIMAADKQPDGSVLAKTLYIGRSLTPAM*
Ga0167648_10095963	3300015171	Glacier Forefield Soil	LVPGAQIIIMGSEKAPDGSVLAKSMYVGRALTPAM*
Ga0137409_112743201	3300015245	Vadose Zone Soil	NKDELKAGTPIIIMQSDKQADGSVLAKNVYVGRGAAPAM*
Ga0132256_1011165342	3300015372	Arabidopsis Rhizosphere	VAPGNRDELKPGTQVIIMASDKQPDGSVLAKTLYVGRNLTPAM*
Ga0132256_1034550061	3300015372	Arabidopsis Rhizosphere	EIKAGTPMIIFGWDKQPDGSVLAKTLYIGRNVTPAM*
Ga0182039_116522061	3300016422	Soil	IAVTPQTVIAAAAPSEKEDLKAGTQVIIFAWDKQSDGSVLAKSIYVGRDVAPAM
Ga0182038_100009241	3300016445	Soil	PGNKDELKPGAQIIIMASDKQPDGSVLAKTLYVGRSLTPAM
Ga0187825_101125541	3300017930	Freshwater Sediment	ELKTGVQIIIFGWDKQPDGSVLAKTMYVGRNLTPAM
Ga0187785_105286092	3300017947	Tropical Peatland	IAAVAPASKDEIKAGSQIIIFASEKQPDGSILAKTMYVGRDVTPAM
Ga0187787_102080511	3300018029	Tropical Peatland	KKILVTPQTVIAAAAPATKDEIKAGTQLIIFGWDKDGDGSVLAKVMYLGRNVTPAM
Ga0187765_110329322	3300018060	Tropical Peatland	IVTPQTMIAAAAPAKKEELKPGVQIIIFGWDKQPDGSVLAKTLYVGRNLTPAM
Ga0184628_103566381	3300018083	Groundwater Sediment	LKPGTQIIIFGWDKQPDGSVLAKTMYVGRNITPAM
Ga0187774_104550991	3300018089	Tropical Peatland	APGSKDEIKPGAQVIIFGWDKQPDGSVLAKVMYVGRGITPAM
Ga0197907_108497342	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	GVGLAIAAAAKGDASELKAGAQIIIFGWDKQADGSVLAKTMYVGRGVTPAM
Ga0126371_109910983	3300021560	Tropical Forest Soil	AITAVAPGNKDELKPGAQIIIMASDKQPDGSVLAKTLYVGRSLTPAM
Ga0207697_100780472	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	AKKEEIKAGAPIIIFGWDKQPDGSVLAKSLYVGRSVTPAM
Ga0208478_10448491	3300025475	Arctic Peat Soil	TVIAAAAPGSKDELKPGAHIIIFASEKQADGVILIKTMYVGRNVAPAM
Ga0207713_12151592	3300025735	Switchgrass Rhizosphere	KIVVTPQTVIAAAAPAKKEEIKAGTPIIIFGWDKQADGSVLAKTLYIGRNVAPAM
Ga0209124_102311881	3300025852	Arctic Peat Soil	DTVIAAVAPGNKSELKAGTPIIIMGSDKQADGSVLAKVLDVGRNITPAM
Ga0209585_104632502	3300025891	Arctic Peat Soil	PGNKSELKAGTPIIIMGSDKQADGSVLAKVLYVGRNVTPAM
Ga0207699_102723213	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	ELKPGAQIIIMQSEKQADGSIVAKNLYVGRGLTPAM
Ga0207707_110483122	3300025912	Corn Rhizosphere	EEIKAGTPIIIFGWDKQPDGSVLAKSLYIGRSVPPAM
Ga0207707_112163861	3300025912	Corn Rhizosphere	AAPAKKEEIKAGTPIIIFGWDKQPDGSVLAKSLYIGRSVTPAM
Ga0207657_115008901	3300025919	Corn Rhizosphere	APAKKEEIKAGTPIIIFGWDKQPDGSVLAKSLYVGRSVTPAM
Ga0207650_107323541	3300025925	Switchgrass Rhizosphere	GNKDELKPGAQIIIMAADKQPDGSVLAKTLYIGRSLTPAM
Ga0207700_113198561	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	AITAVAPGNKDELKPGAQIIIMAADKQPDGSVLAKTLYVGRSLTPAM
Ga0207670_101942021	3300025936	Switchgrass Rhizosphere	IAAAAPAKKEEIKAGTPIIIFGWDKQADGSVLAKTLYIGRNVAPAM
Ga0207667_102218924	3300025949	Corn Rhizosphere	DKSELKPGVQIIIFGWEKLPDGAVLAKTLYVGRGLTPAM
Ga0207667_103220981	3300025949	Corn Rhizosphere	TPQTVIAAVAKGDKKELKKGAHILIFQSEKQAGGSLLAKVLYVGRDVVPAM
Ga0207639_104618613	3300026041	Corn Rhizosphere	TAVAPGNKDELKPGAQIIIMAADKQPDGSVLAKTLYVGRSLTPAM
Ga0207678_111599182	3300026067	Corn Rhizosphere	VHVTPQTVIAAAAPGKKEEIKAGTPIIIFGWDKQPDGSVLAKTLYIGRNVTPAM
Ga0207674_113117921	3300026116	Corn Rhizosphere	ELKPGVQIIIFGWEKLPDGAVLAKTLYVGRGLTPAM
Ga0207576_1001991	3300026745	Soil	VVVTPQTIIAAAAPAKKEEIKAGTPMIIFGWDKQPDGSVLAKTLYIGRSVAPAM
Ga0207820_1051921	3300026809	Tropical Forest Soil	SKGELRPGVEIIIFGWDKQADGSVLVKTMYVGRGLTPAM
Ga0207804_1150862	3300026849	Tropical Forest Soil	IAAAAPAKKEELKPGVQIIIFGWDKQPDGSVLAKTLYVGRNLTPAM
Ga0207783_10130041	3300026942	Tropical Forest Soil	LRPGAEIIIFGWDKQADGSVLVKTMYVGRGLTPAM
Ga0207777_10378951	3300027330	Tropical Forest Soil	KVIVTPQTMIAAAAPAKKEELKPGVQIIIFGWDKQPDGSVLAKTLYVGRNLTPAM
Ga0209073_103358801	3300027765	Agricultural Soil	AAPANKEELKPGAQIIIFGWDKQPDGSILAKTLYVGRSLTPAM
Ga0209974_100306071	3300027876	Arabidopsis Thaliana Rhizosphere	PGKKEEIRAGTPIIIFGWDKQPDGSVLAKTLYIGRSVTPAM
Ga0209048_105616531	3300027902	Freshwater Lake Sediment	TVIAAAAPGNKDELKAGAQIIIFGWDKQPDGSVLAKVMYVGRNVVPAM
Ga0307299_102254171	3300028793	Soil	NKDELKPGAQIIIMASDKQPDGSVLAKTLYVGRSLTPAM
Ga0307497_100144972	3300031226	Soil	AAPAKKEEIKAGTPIIIFGWDKQPDGSVLAKSLYVGRSVTPAM
Ga0302323_1033333461	3300031232	Fen	GNKDELKAGTPIIIMASEKQADGSVLAKTVYVGRAGPPAM
Ga0265340_104249281	3300031247	Rhizosphere	VIAAVAPGNKDELKAGTPIIIMASEKQADGSVLAKTLYVGRAGPPAM
(restricted) Ga0255312_11357101	3300031248	Sandy Soil	TPQTVIAAAAPAKKEEIKAGTPIIIFGWDKQPDGSVLAKTLYIGRSVTPAM
Ga0308194_101025051	3300031421	Soil	GNKDELKPGAQIIIMASDKQPDGSVLAKTLYVGRSLTPAM
Ga0170820_173696651	3300031446	Forest Soil	VIAAAAPGKKEELKPGAQIIIFGWDKQADGSVLAKTLYVGRAGPPAM
Ga0170818_1116375221	3300031474	Forest Soil	TVIAAAAPGKKEELKPGAQIIIFGWDKQADGSVLAKTLYVGRAGPPAM
Ga0318542_104095341	3300031668	Soil	ITAVAPGNKDELKPGAQIIIMASDKQPDGSVLAKTLYVGRSLTPAM
Ga0315293_108068582	3300031746	Sediment	KDTVIAAAAPGSKDEIKAGVQVIIFGWDKQPDGSVLAKTMYVGRDVKPAM
Ga0308175_1011325852	3300031938	Soil	AAKGDASELKAGAQIIVFGWEKQADGSVLAKTMYVGRGLTPAM
Ga0310896_102292411	3300032211	Soil	GNKDELKPGTQIIIMAADKQSDGSVLAKTLYVGRSLTPAM
Ga0335081_107742442	3300032892	Soil	IAAAAPGSKDELKPGAQIVIFGWDKQADGSVLAKVMYVGRDVVPAM
Ga0310811_103274041	3300033475	Soil	GDKSELKAGTPVIIMGSEKAADGTVVAKTLYIGRNVRPAM
Ga0299912_103119772	3300033489	Soil	LKAGTPVIIMASDKQPDGSVLGKTFYVGRGVAPAM
Ga0314871_007007_635_766	3300033809	Peatland	AAPGKKEELKPGAQIIIFGWDKQTDGSVLAKTLYIGRAGPPAM
Ga0370484_0086267_702_809	3300034125	Untreated Peat Soil	LKAGAQLIIFGWDKQADGSVLAKVMYVGRGVTPAM
Ga0370484_0238615_378_503	3300034125	Untreated Peat Soil	PSSKDELKAGTQIIIFGWDKQSDGSVLAKVMYVGRNVTPAM
Ga0373950_0000978_3462_3617	3300034818	Rhizosphere Soil	TPQTVIAAAAPAKKEEIKAGTPIIIFGWDKQPDGSVLAKSLYVGRSVTPAM

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters