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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F097009 |
| Family Type | Metagenome |
| Number of Sequences | 104 |
| Average Sequence Length | 62 residues |
| Representative Sequence | DPWAELRVLQASLPGRVRWDGEPAPLVRPGPRVAYVEEAREEPVWSPLAERVREAMCSPS |
| Number of Associated Samples | 99 |
| Number of Associated Scaffolds | 104 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 1.11 % |
| % of genes near scaffold ends (potentially truncated) | 85.58 % |
| % of genes from short scaffolds (< 2000 bps) | 82.69 % |
| Associated GOLD sequencing projects | 97 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.61 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (63.462 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (14.423 % of family members) |
| Environment Ontology (ENVO) | Unclassified (28.846 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (40.385 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 22.73% β-sheet: 12.50% Coil/Unstructured: 64.77% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.61 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 104 Family Scaffolds |
|---|---|---|
| PF12838 | Fer4_7 | 39.42 |
| PF13183 | Fer4_8 | 37.50 |
| PF13534 | Fer4_17 | 9.62 |
| PF00037 | Fer4 | 2.88 |
| PF01274 | Malate_synthase | 1.92 |
| PF12800 | Fer4_4 | 0.96 |
| PF01411 | tRNA-synt_2c | 0.96 |
| PF02826 | 2-Hacid_dh_C | 0.96 |
| PF13237 | Fer4_10 | 0.96 |
| PF02754 | CCG | 0.96 |
| PF00753 | Lactamase_B | 0.96 |
| COG ID | Name | Functional Category | % Frequency in 104 Family Scaffolds |
|---|---|---|---|
| COG2225 | Malate synthase | Energy production and conversion [C] | 1.92 |
| COG0013 | Alanyl-tRNA synthetase | Translation, ribosomal structure and biogenesis [J] | 0.96 |
| COG0247 | Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF | Energy production and conversion [C] | 0.96 |
| COG2048 | Heterodisulfide reductase, subunit B | Energy production and conversion [C] | 0.96 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 63.46 % |
| All Organisms | root | All Organisms | 36.54 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 14.42% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 13.46% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 12.50% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 6.73% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 5.77% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 5.77% |
| Permafrost | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost | 4.81% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 2.88% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 2.88% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 2.88% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 1.92% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.92% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 1.92% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 1.92% |
| Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 1.92% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.92% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.96% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 0.96% |
| Wetland Sediment | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment | 0.96% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.96% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 0.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.96% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere | 0.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.96% |
| Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland | 0.96% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.96% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.96% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 0.96% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.96% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.96% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.96% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 0.96% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.96% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001538 | Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina | Environmental | Open in IMG/M |
| 3300001686 | Grasslands soil microbial communities from Hopland, California, USA | Environmental | Open in IMG/M |
| 3300002568 | Grasslands soil microbial communities from Hopland, California, USA - 2 | Environmental | Open in IMG/M |
| 3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
| 3300005167 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 | Environmental | Open in IMG/M |
| 3300005184 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 | Environmental | Open in IMG/M |
| 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Environmental | Open in IMG/M |
| 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
| 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
| 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Environmental | Open in IMG/M |
| 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
| 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Environmental | Open in IMG/M |
| 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Environmental | Open in IMG/M |
| 3300005553 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 | Environmental | Open in IMG/M |
| 3300005554 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 | Environmental | Open in IMG/M |
| 3300005561 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 | Environmental | Open in IMG/M |
| 3300005568 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 | Environmental | Open in IMG/M |
| 3300005587 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 | Environmental | Open in IMG/M |
| 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Environmental | Open in IMG/M |
| 3300006034 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105 | Environmental | Open in IMG/M |
| 3300006041 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 | Environmental | Open in IMG/M |
| 3300006046 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101 | Environmental | Open in IMG/M |
| 3300006057 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012 | Environmental | Open in IMG/M |
| 3300006162 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 | Environmental | Open in IMG/M |
| 3300006794 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 | Environmental | Open in IMG/M |
| 3300006800 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 | Environmental | Open in IMG/M |
| 3300006950 | Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one | Environmental | Open in IMG/M |
| 3300009089 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG | Environmental | Open in IMG/M |
| 3300009090 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG | Environmental | Open in IMG/M |
| 3300009143 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 | Environmental | Open in IMG/M |
| 3300010371 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300011270 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG | Environmental | Open in IMG/M |
| 3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
| 3300011987 | Permafrost microbial communities from Nunavut, Canada - A20_80cm_0M | Environmental | Open in IMG/M |
| 3300011999 | Permafrost microbial communities from Nunavut, Canada - A28_65cm_6M | Environmental | Open in IMG/M |
| 3300012005 | Permafrost microbial communities from Nunavut, Canada - A15_80cm_0M | Environmental | Open in IMG/M |
| 3300012199 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG | Environmental | Open in IMG/M |
| 3300012200 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG | Environmental | Open in IMG/M |
| 3300012201 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG | Environmental | Open in IMG/M |
| 3300012211 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG | Environmental | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012354 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG | Environmental | Open in IMG/M |
| 3300012358 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG | Environmental | Open in IMG/M |
| 3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
| 3300012893 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1 | Environmental | Open in IMG/M |
| 3300012944 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012955 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG | Environmental | Open in IMG/M |
| 3300012958 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG | Environmental | Open in IMG/M |
| 3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
| 3300012977 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300012984 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG | Environmental | Open in IMG/M |
| 3300012985 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG | Environmental | Open in IMG/M |
| 3300012988 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG | Environmental | Open in IMG/M |
| 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Host-Associated | Open in IMG/M |
| 3300014199 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG | Environmental | Open in IMG/M |
| 3300014497 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG | Host-Associated | Open in IMG/M |
| 3300014827 | Permafrost microbial communities from Nunavut, Canada - A3_80cm_18M | Environmental | Open in IMG/M |
| 3300015356 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300017659 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300018431 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104 | Environmental | Open in IMG/M |
| 3300018468 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111 | Environmental | Open in IMG/M |
| 3300018920 | Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS | Environmental | Open in IMG/M |
| 3300019767 | Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T | Environmental | Open in IMG/M |
| 3300019875 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2 | Environmental | Open in IMG/M |
| 3300019890 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1 | Environmental | Open in IMG/M |
| 3300020002 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1 | Environmental | Open in IMG/M |
| 3300021441 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 | Host-Associated | Open in IMG/M |
| 3300025482 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes) | Environmental | Open in IMG/M |
| 3300025501 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150 (SPAdes) | Environmental | Open in IMG/M |
| 3300025544 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 (SPAdes) | Environmental | Open in IMG/M |
| 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025930 | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) | Environmental | Open in IMG/M |
| 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026550 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes) | Environmental | Open in IMG/M |
| 3300027778 | Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes) | Environmental | Open in IMG/M |
| 3300027857 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027875 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027905 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) | Environmental | Open in IMG/M |
| 3300028556 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG | Host-Associated | Open in IMG/M |
| 3300028666 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG | Host-Associated | Open in IMG/M |
| 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Host-Associated | Open in IMG/M |
| 3300029984 | I_Fen_E1 coassembly | Environmental | Open in IMG/M |
| 3300030010 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_4 | Environmental | Open in IMG/M |
| 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Host-Associated | Open in IMG/M |
| 3300031242 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG | Host-Associated | Open in IMG/M |
| 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Host-Associated | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032828 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 | Environmental | Open in IMG/M |
| 3300032893 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 | Environmental | Open in IMG/M |
| 3300032954 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 | Environmental | Open in IMG/M |
| 3300033004 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4 | Environmental | Open in IMG/M |
| 3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
| 3300033475 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC | Environmental | Open in IMG/M |
| 3300033809 | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_D | Environmental | Open in IMG/M |
| 3300034268 | Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| A10PFW1_109111632 | 3300001538 | Permafrost | QLRALDGEEADPWAELRVLQASLPGRVRWDGEPAPLVRPGPRVAYVAEAREPVWSPLAERVREAMGREALCSPS* |
| C688J18823_107825111 | 3300001686 | Soil | ALGGEEHDAWDDLRRLQSTLAGRVRWDGQEAPLVRPGRRVAYVEERRDERWSPLAERVVEALCSRS* |
| C688J35102_1201618831 | 3300002568 | Soil | EPWAEVRALQADLHRRVRWDGGAAPLVRPGPGVAYVEGEPPETWSPLAERVVSALGRASWSPS* |
| Ga0062595_1017836722 | 3300004479 | Soil | RALGGDEVDEWDALRRLQASLPGRLRWDGDPAPLVRPGRRIAYVDEPTEARWSELADRVVETLCNRS* |
| Ga0066672_103941922 | 3300005167 | Soil | VLFEGSPHAVEAQLRELGGEEAEPWDALRALQARLPGRVRWDGQPAPLVRPGPRFAYAEEAREPVWSPLAERVLEAMCSPS* |
| Ga0066671_105241592 | 3300005184 | Soil | WDEIRALQATLPGRMRWDGQDAPLVRPGPRVAYVAEAREPSWTPLAERVREVLCSPT* |
| Ga0070683_1004963492 | 3300005329 | Corn Rhizosphere | AQAAELGGEDVEPWTEVRALQAELRRRVRWDGGAAPLVRPGPRVAYVEGEPEEAWSPLAERVVEALRKASCSQT* |
| Ga0070714_1013609191 | 3300005435 | Agricultural Soil | RALQADLPGRKRWDGGTAPLVRPGPRVAYTETPNAGEWSALAERVVEALCSPS* |
| Ga0070713_1006330922 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | LPGRRKWDGSPAPLVRPGARVAYVEEAAEAEWSPLALAVVEAVCSPS* |
| Ga0070706_1015061852 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | LRELGGEEADPWEELRALQAGLPGRVRWDGQEAPLVRPGPRVAYVDQAREQAWSPLAERVLEAMCSPS* |
| Ga0070707_1003663691 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | DADPWGELRALQASLPRRVRWDGRDAPLVRPGPRVASLDGPPEQQWSALAERIVEAFCSPS* |
| Ga0070698_1004571422 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | FEGLPRAVDAQLRELGGEEADPWEELRALQAELPGRVRWDGEEAPLVRPGPRVAYVGQARERAWSPLAERVLEAMCSPS* |
| Ga0070698_1006966801 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | PRAVDAQLRELGGEETDPWDELRALQSRLPGRVRWDGEAAALVRPGPRFAYVEQTREPAWSPLAERVLEAMCSRS* |
| Ga0070696_1002665691 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | VDAQALALGGEEAEPWEWIRALQAELPGRVRWNGEDAMLVRPGPRVAYVAQLREPAWSPLAERVVEAMCSPS* |
| Ga0066695_104791842 | 3300005553 | Soil | RLPGRVRWDGGDAPLVRPGPKVAYVEETQEASWSALAERISEALAREAPCSPS* |
| Ga0066661_105730292 | 3300005554 | Soil | GEEAEPWDALRALQARLPGRVRWDGQPAPLVRPGPRFAYAEEAREAVWSPLAERVLEAMCSPS* |
| Ga0066699_104319942 | 3300005561 | Soil | PGRVRWNGGDAPLVRPGPRVAYVEERVERPWSPLAERVVEALCSRS* |
| Ga0066703_104967041 | 3300005568 | Soil | LQARLPGRLRWDGQPAPLVRPGRRFAYAEEAREPVWSPLAERVLEAMCSPS* |
| Ga0066654_104641211 | 3300005587 | Soil | VDPWDEIRGLQARLRGRKRWNGERAPLVRPGPRVAYVDEPLERQWSALAERVVEALCNPS |
| Ga0070717_121254342 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | ELRDLQAGLQGRVRWDGGGAPLVRPGPRVAYVERAEPPPWSPLAERVLEALCSPT* |
| Ga0066656_106645752 | 3300006034 | Soil | TLPGRVRWDGQEAPLVRPGRGIAYVTEAPAERWSPLAERVAEALCSPS* |
| Ga0075023_1002254541 | 3300006041 | Watersheds | AVDTQLRALGGEEAEPWEMLRTLQARLPGRARWDGQSARLVRPGPRFAYSDEMREPVWSPLAERVLESMCSPS* |
| Ga0066652_1020013622 | 3300006046 | Soil | WSEVRALQARLTGRKRWDGERAPLVRPGPRIAYVEGPVERAWSALADRVVETMCNRS* |
| Ga0066652_1020773212 | 3300006046 | Soil | PWEELRLLQARLPGRVRWDGADAPLVRPGPSVAYVEHAREPSWSALAERTREALCSPS* |
| Ga0075026_1007142311 | 3300006057 | Watersheds | LRALQSTLPGRVRWDGREAPLVRPGPRVAYVSEPAEARWSPLAERVVEALCSPS* |
| Ga0075030_1012381161 | 3300006162 | Watersheds | EEADRWEEIRALQASLPGRRRWSDAPAPLVRPGPAVAYVEDATAAAWSPLAERVVEALWTRS* |
| Ga0066658_103439691 | 3300006794 | Soil | SLPGRVRWDGKPAPLVRPGPQVAYVAEARTGVWSPLAERVEEALCSPS* |
| Ga0066660_105842232 | 3300006800 | Soil | EPWDALRALQARLPGRVRWDGQPAPLVRPGPRFAYAEEAREAVWSPLAERVLEAMCSPS* |
| Ga0066660_111715862 | 3300006800 | Soil | AQAEELGGDEADLWADVRTLQAGLHRRVRWDGGAAPLVRPGPRVAYVEGEPAPSWSPLAERVVEAMRARVA* |
| Ga0075524_101783642 | 3300006950 | Arctic Peat Soil | SRASATYAIRGPGRVRWDGGPAPLVRPGPRIAYVAEAREPVWSPLAERVREAMGREALCSPS* |
| Ga0099828_108130862 | 3300009089 | Vadose Zone Soil | VDAQLRALGGEEADPWAKLRALQARLPARMHWDGQEAPLVRPGPRVAYVEQAREQVWSPLAERVLEAMCSPS* |
| Ga0099828_112939901 | 3300009089 | Vadose Zone Soil | VDAQLRALEGEETDPWADLRILQASLPGRVRWDGEPAPLLRPGPRVAYVAESREPAWSPLAERVREAMCSPS* |
| Ga0099827_114389542 | 3300009090 | Vadose Zone Soil | RLPGRVRWDGQEAPLVRPGPRFAYVEEPREPVWSPLAERVLEAMCSPS* |
| Ga0099792_105237031 | 3300009143 | Vadose Zone Soil | DAQLRALEGEETDPWADLRILQASLPGRVRWDGEPAPLLRPGPRVAYVAESREPAWSPLAERVREAMCSPS* |
| Ga0134125_126408612 | 3300010371 | Terrestrial Soil | WDELRTLQSQLRGRRRWDGTAAPLVRPGPRVAYLEDDEAQPWSPLAASS* |
| Ga0134121_127400062 | 3300010401 | Terrestrial Soil | GLPRAVDAQLVALGGEESDPWEELRALQARLPGRARWDGQEAPLVRPGPRVAYVEQVQEPAWSPLVERVVEAMCSPT* |
| Ga0137391_105286642 | 3300011270 | Vadose Zone Soil | DPWAELRVLQASLPGRVRWDGEPAPLVRPGPRVAYVEEAREEPVWSPLAERVREAMCSPS |
| Ga0137393_111430742 | 3300011271 | Vadose Zone Soil | SQRAVDAQLRALEGEETDPWADLRILQASLPGRVRWDGEPAPLLRPGPRVAYVAESREPAWSPLAERVREAMCSPS* |
| Ga0120164_10079811 | 3300011987 | Permafrost | WNELRALQAGLRRRVRWDGGLAPLVRPGPRVAYLEGEPDETWSPLAERVVEAMCSPS* |
| Ga0120148_11128412 | 3300011999 | Permafrost | DEIRALQADLNRRVRWEGGEAPLVRPGPRVAYVEGEPESSWSPLAERVVEALCNPS* |
| Ga0120161_11164762 | 3300012005 | Permafrost | PWNELRALQAGLRRRVRWDGGLAPLVRPGPRVAYLEGEPDETWSPLAERVVEAMCSPS* |
| Ga0137383_108119232 | 3300012199 | Vadose Zone Soil | ALDGEEADPWAELRVLQASLPGRVRWDGEPAPLVRPGPRVAYVEETREPVWNPLAERVREAMCSPS* |
| Ga0137382_109398611 | 3300012200 | Vadose Zone Soil | GDTVDPWAEVRTLQAALPGRKRWDGERAPLVRPGPCVAYVEETVERAWSALADRVVETMCNRS* |
| Ga0137365_108409002 | 3300012201 | Vadose Zone Soil | FEGSWRAVDAQVEALGGKETDPWDDLRALQATLPGRVRWDGQEAPLVRPGRGIAYVTEAPAERWSPLAERVAEALCNPS* |
| Ga0137377_102529811 | 3300012211 | Vadose Zone Soil | DELRAAQARLPGRVRWDGQAVPLVRPGRRYAYVAEAREPVWSPLAERLLEAMCSPS* |
| Ga0150985_1047816522 | 3300012212 | Avena Fatua Rhizosphere | GGEGHDARDELRRLQSTLPGRLRWDGQGAPLVRPGRRVAYVEERHEERWSPLAERVVEALCSRS* |
| Ga0137366_105311641 | 3300012354 | Vadose Zone Soil | AQALALDGAEDEPWEGLRALQATLPGRARWDGQDAPLVRPGPRVAYLAESREPVWSPLAERILEAMCSPS* |
| Ga0137368_105324572 | 3300012358 | Vadose Zone Soil | GGEESEPWDELRALQARLPGRVRWDGEAAALVRPGPRFAYVEQPREPAWSPLAERVLEAMCSPS* |
| Ga0137360_116107672 | 3300012361 | Vadose Zone Soil | LRAKQARLPGRERWDGQAAPLVRPGPRFAYVEEAHEPVWSPLAERVLEAMCSPS* |
| Ga0157284_102901592 | 3300012893 | Soil | GEESDPWEELRALQARLPGKARWDGEEAPLVRPGPRVAYVETAREQAWSPLAERVLEAMCSPS* |
| Ga0137410_117169221 | 3300012944 | Vadose Zone Soil | RRVRWDGGAAPLVRPGPRVAYVEGEPAETWSPLAERVVAALGRASCSPS* |
| Ga0164298_111188691 | 3300012955 | Soil | AQVAATGGSDTEPWDELRDLQARLPGRVRWDGGAASLVRPGPRVAYVEEAPVPSWSPLAERVVEAFCKPS* |
| Ga0164299_114590752 | 3300012958 | Soil | ALQGRLPGRVRWDGGAAPLVRPGPRVAYVEEAAAPSWSPLAERVVEAFCKPS* |
| Ga0164302_119401941 | 3300012961 | Soil | LRELQARLPGRARWDGGAAPLVRPGPRVAYVEEAAAPSWSPLAERVVEAFCKPS* |
| Ga0134087_107051831 | 3300012977 | Grasslands Soil | ELPGRIRWDGGNAQLVRPGPRVAYVAEARKPVWSPLAERVLEAMCSPS* |
| Ga0164309_109592882 | 3300012984 | Soil | QRAVDEQMRALGGEEGEPWEQLRQLQSTLAGHVRWDGQDAPLVRPGRRVAYVAEAREGRWSPLAERVVEALCSKS* |
| Ga0164308_117864192 | 3300012985 | Soil | PGRVRWDGQDAPLVRPGRAVAYVEEAAEPAWSPLAERVVEALCRAS* |
| Ga0164306_104298772 | 3300012988 | Soil | AGRARWDGGAAPLIRPGPRVAYTERPGDERWSPLAERVVESLCSPT* |
| Ga0157369_108498202 | 3300013105 | Corn Rhizosphere | DVDEPWEWLRALQAELPGRVRWNGEDALLVRPGPRIAYVAQLREPAWSPLAERVVEAMCSPS* |
| Ga0181535_102544922 | 3300014199 | Bog | QALLPGRRRWEGEDAALVRPGPCVAYVERGGEQAWSPLAERVVEMLCRTS* |
| Ga0182008_108101522 | 3300014497 | Rhizosphere | ALQAELRRRVRWDGGAAPLVRPGPRVAYVEGEPAEAWSPLAERVVEALRKASCSQT* |
| Ga0120171_10689322 | 3300014827 | Permafrost | EELRTLQARLPGRVRWDGQAAQLARPGPRFAYLEEVREPIWSPLAERVLESLCSPS* |
| Ga0134073_103139102 | 3300015356 | Grasslands Soil | DEVRALQARLPGRIRFDGGGAPLVRPGPRVAYVEEAVEQPWSALAERVVESLCSKS* |
| Ga0132258_123275492 | 3300015371 | Arabidopsis Rhizosphere | EDEPWARLRELQDALPGRVRWDGQSAPLVRPGPRVAYVPELHEPAWSPLAERVVEALCSPS* |
| Ga0134083_102858601 | 3300017659 | Grasslands Soil | DELRALQARLPGRVRWDAQAAGLVRPGPRFAYVEQAREPVWSPLAERVLEAMCSPS |
| Ga0066655_111469501 | 3300018431 | Grasslands Soil | QAGLPGRKRWDGERAPLVRPGPRVAYVDEPVEQRWSALAERVVEALCNPS |
| Ga0066662_128058472 | 3300018468 | Grasslands Soil | AELRVLQASLPGRVRWDGEPAPLVRPGPRVAYVEEAREEPVWSPLAERVREAMCSPS |
| Ga0190273_111155932 | 3300018920 | Soil | GGEEADGWAEVRALQARLAARVRWDGQHAPLVRPGPRVAYVEQAPAPAWSPLAERVREALWIPS |
| Ga0190267_102223441 | 3300019767 | Soil | RAVEAQLRALGGDQVEPWEDLRDLQASLSGRVRWDGQATPLVRPGRRFAYVADAPEEAAGPAWSPLAERVLEALCSPS |
| Ga0193701_10871531 | 3300019875 | Soil | SQGAVDAQARALGGEEAEPWEWIRALQAELPGRLRWTGEDALLVRPGPRVAYVAQAREPAWNPLAERVVEAMCNPS |
| Ga0193728_12067191 | 3300019890 | Soil | GGEEAEPWDELRAKQARLPGRVRWDGQAAPLVRPGPRFAYVEEAREPVWSQLAERVLEAMCSPS |
| Ga0193730_11190121 | 3300020002 | Soil | VLFEGASRAVDAQLRALGGEEADPWDELRAKQANLSGRERWDGQAAPLVRPGPRFAYVEEAREQVWSPLAERVLEAMCSPS |
| Ga0213871_100165823 | 3300021441 | Rhizosphere | EALGGSEADPWGHVRALQASLPGRARWRGEDAPLVRPGRATAYVAEASQEKWSPLAERVREALCSPS |
| Ga0208715_10398642 | 3300025482 | Arctic Peat Soil | DRERALEGEEADPWTELRVLQASLPGRVRWDGAEAPLVRPGPRVAYVAEAREPRWSALAERVRESMCSPS |
| Ga0208563_10537621 | 3300025501 | Peatland | WDELRALQARLPGRVRWDGQEAPLVRPGPCVAYIEEVLAQAWSPLAERVREAMCSPS |
| Ga0208078_10065631 | 3300025544 | Arctic Peat Soil | DAQVRALEGEEADPWTELRVLQASLSGRVRWDGGAAPLVRPGPRVAYVAEAREPRWSALAERVRESMCSPS |
| Ga0207645_106393432 | 3300025907 | Miscanthus Rhizosphere | MAVDAQLRALGGEEADPWEELRALQARLPGRVRWDGQQAPLVRPGPRVAYVEQVREQPWSPLAERVLEAMCSPS |
| Ga0207687_114396171 | 3300025927 | Miscanthus Rhizosphere | SLPGRIRWDGGDAPLIRPGPRVAYVEEPVESEWSALAQRILEAFCNPS |
| Ga0207687_117162042 | 3300025927 | Miscanthus Rhizosphere | ELGGEDAEPWLEVRALQADLHRQVRWDGGAAPLVRPGPRVAYVEGEPAETWSPLAERVVAALREASCNPS |
| Ga0207664_113026751 | 3300025929 | Agricultural Soil | GDEVDPWPGVRALQADLPGRKRWDGGTAPLVRPGPRVAYTETPNAGEWSALAERVVEALCSPS |
| Ga0207701_108314561 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | EVRALQSRLPGRARWDGERAPLVRPGPRVAYVEERVEREWSALAERVVEALCNPT |
| Ga0207706_109144932 | 3300025933 | Corn Rhizosphere | LPGRIRWDGGDAPLIRPGPRVAYVEEPVESEWSALAQRILEAFCNPS |
| Ga0209474_102839042 | 3300026550 | Soil | DPWDDLRALQATLPGRVRWDGQEAPLVRPGPGIAYVTEAPAERWSPLAERVAEALCNPS |
| Ga0209464_100191971 | 3300027778 | Wetland Sediment | DHWAELRGLQSSLPGRVRWDAGDAPLVRPGPQVAYVAQAREPGWSPLAERVRESMGQEAPCSPS |
| Ga0209166_104514031 | 3300027857 | Surface Soil | DGKEVDPWDDLRALQSTLPGRVRWDGREAPLVRPGPRVAYVSEPAEARWSPLAERVVEALCSPS |
| Ga0209283_106036962 | 3300027875 | Vadose Zone Soil | LEGEETDPWADLRILQASLPGRVRWDGEPAPLLRPGPRVAYVAESREPAWSPLAERVREAMCSPS |
| Ga0209415_104221041 | 3300027905 | Peatlands Soil | GGEEADRWDEIRALQATLAGRRHWTGETAPLVRPGPAVAYVEDATAAAWSPLAERVVEALWTRS |
| Ga0265337_11906402 | 3300028556 | Rhizosphere | VLFEGSTRAVDAQVRALDGEEADPWAELRTLQASLPGRVRWDGGAAPLVRPGPRVAYVAEAREPAWSALAERVREGMCSPS |
| Ga0265336_102026271 | 3300028666 | Rhizosphere | SLPGRVRWDGGPAPLVRPGPRVAYVAEAREPRWSALAERVRESMCSPS |
| Ga0265338_111405141 | 3300028800 | Rhizosphere | VDAQAATLGGAEAEPWDELRALQAGLPGRVRWDGGDAPLVRPGPRVAYVADRGEQPWSPLAERVLEALAVRTQCSPS |
| Ga0311332_109154861 | 3300029984 | Fen | SLPGRARWDGGSAPLVRPGPRVAYLEHDEPPAWSPLAERVLEALCSPS |
| Ga0302299_106379212 | 3300030010 | Fen | FGGERVEPWAEVRDLQASLPGRARWDGGSAPLVRPGPRVAYVEHDEPPAWSPLAERVLEALCSPS |
| Ga0265330_103767021 | 3300031235 | Rhizosphere | PQIRALQATLPGRRRWDGEPGAGDEAPLVRPGPRVAYTREACGEHWSPLAERVMEALWTR |
| Ga0265329_100134291 | 3300031242 | Rhizosphere | WAELRTLQASLPGRVRWDGGAAPLVRPGPRVAYVAEAREPAWSALAERVREGMCSPS |
| Ga0265314_105731902 | 3300031711 | Rhizosphere | LRALQGTLPGRVRWDGSQAPLVRPGPRVAYLAERVEQPWSPLAERVLEAFAVRTQCSQN |
| Ga0335078_122884931 | 3300032805 | Soil | ARLRELQATLPGRRRWLGPESGEAPLVRPGPRVAYTAEPAPARFSPLAERVAQALGARP |
| Ga0335080_120313011 | 3300032828 | Soil | AQAAELGGEDADPWTEVRELQASLPGRRKWDGSPAPLVRPGPRVAYVEDAGEATWSPLAVRIVEALCNPS |
| Ga0335069_126942242 | 3300032893 | Soil | LQASLPGRRKWDGSPAPLVRPGPRVAYVEDAGEATWSPLAVRIVEALCNPS |
| Ga0335083_115331152 | 3300032954 | Soil | VRALQASLPGRRRWDGGPVPLARPGPRVAYVEESTEGEWSALALAVVEMLCKPS |
| Ga0335084_107065162 | 3300033004 | Soil | RSVDAQAGELGGEEGDPWDELRALQARLPGRVKHDGRDAPLVRPGPRVAYVEEAQEPAWSPLARTVEEALCKPS |
| Ga0335073_117246732 | 3300033134 | Soil | VDAQLSALGGEEADRWEEIRALQGTLAGRRRWQGDEAPLVRPGPAVAYVQEAVAETWSPLAERVVEAMWTPS |
| Ga0310811_112385261 | 3300033475 | Soil | SEPWDELRTLQSQLRGRRRWDGSAAPLIRPGPLVAYVDDLEEQPWSPLAERIVEALCNPS |
| Ga0314871_014543_414_608 | 3300033809 | Peatland | GGEECDPWDELRALQAQLAGRARWDGQPAPLVRPGPRVAYVEEAREERWSPLAERVRELLCSAS |
| Ga0372943_0383025_714_905 | 3300034268 | Soil | GEEADRWDELRALQASLPGRIRWDGGAAPLVRPGPRVAHVEHVTQTAWSPLAERVREAMCSPS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |