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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028764 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0134627 | Gp0312944 | Ga0302260 |
| Sample Name | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E1_4 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 321343700 |
| Sequencing Scaffolds | 37 |
| Novel Protein Genes | 38 |
| Associated Families | 35 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 2 |
| Not Available | 17 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → unclassified Paludibacter → Paludibacter sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides cynanchi | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella flava | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → fen → permafrost |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sweden: Abisko, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0469 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010406 | Metagenome | 304 | Y |
| F012538 | Metagenome | 280 | Y |
| F014530 | Metagenome / Metatranscriptome | 262 | Y |
| F014637 | Metagenome | 261 | Y |
| F017062 | Metagenome / Metatranscriptome | 243 | Y |
| F017564 | Metagenome / Metatranscriptome | 240 | Y |
| F024915 | Metagenome / Metatranscriptome | 204 | N |
| F025880 | Metagenome / Metatranscriptome | 200 | Y |
| F028193 | Metagenome / Metatranscriptome | 192 | Y |
| F030330 | Metagenome | 185 | Y |
| F036219 | Metagenome / Metatranscriptome | 170 | Y |
| F036491 | Metagenome | 170 | Y |
| F040130 | Metagenome / Metatranscriptome | 162 | Y |
| F040670 | Metagenome / Metatranscriptome | 161 | Y |
| F040773 | Metagenome | 161 | Y |
| F042447 | Metagenome / Metatranscriptome | 158 | N |
| F043652 | Metagenome | 156 | Y |
| F043656 | Metagenome / Metatranscriptome | 156 | Y |
| F045255 | Metagenome | 153 | Y |
| F049598 | Metagenome | 146 | Y |
| F053329 | Metagenome / Metatranscriptome | 141 | Y |
| F059555 | Metagenome | 133 | Y |
| F060381 | Metagenome / Metatranscriptome | 133 | Y |
| F062490 | Metagenome / Metatranscriptome | 130 | Y |
| F075447 | Metagenome | 119 | Y |
| F080113 | Metagenome / Metatranscriptome | 115 | Y |
| F080669 | Metagenome | 115 | Y |
| F081920 | Metagenome | 114 | N |
| F082778 | Metagenome | 113 | N |
| F083856 | Metagenome | 112 | Y |
| F084383 | Metagenome | 112 | Y |
| F091040 | Metagenome / Metatranscriptome | 108 | Y |
| F096161 | Metagenome | 105 | N |
| F100041 | Metagenome | 103 | N |
| F102124 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0302260_1002528 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 3614 | Open in IMG/M |
| Ga0302260_1013554 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1691 | Open in IMG/M |
| Ga0302260_1031204 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1107 | Open in IMG/M |
| Ga0302260_1034898 | Not Available | 1043 | Open in IMG/M |
| Ga0302260_1040771 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → unclassified Paludibacter → Paludibacter sp. | 961 | Open in IMG/M |
| Ga0302260_1043817 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 925 | Open in IMG/M |
| Ga0302260_1053657 | Not Available | 832 | Open in IMG/M |
| Ga0302260_1056901 | Not Available | 807 | Open in IMG/M |
| Ga0302260_1057860 | Not Available | 799 | Open in IMG/M |
| Ga0302260_1063080 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales | 764 | Open in IMG/M |
| Ga0302260_1063421 | Not Available | 762 | Open in IMG/M |
| Ga0302260_1064058 | Not Available | 757 | Open in IMG/M |
| Ga0302260_1065805 | All Organisms → cellular organisms → Bacteria | 747 | Open in IMG/M |
| Ga0302260_1069246 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 727 | Open in IMG/M |
| Ga0302260_1069480 | Not Available | 726 | Open in IMG/M |
| Ga0302260_1075218 | Not Available | 697 | Open in IMG/M |
| Ga0302260_1075927 | Not Available | 693 | Open in IMG/M |
| Ga0302260_1076917 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094 | 689 | Open in IMG/M |
| Ga0302260_1079949 | Not Available | 675 | Open in IMG/M |
| Ga0302260_1080829 | Not Available | 671 | Open in IMG/M |
| Ga0302260_1081402 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides cynanchi | 668 | Open in IMG/M |
| Ga0302260_1082822 | Not Available | 662 | Open in IMG/M |
| Ga0302260_1085057 | Not Available | 653 | Open in IMG/M |
| Ga0302260_1085749 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 650 | Open in IMG/M |
| Ga0302260_1093646 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 621 | Open in IMG/M |
| Ga0302260_1097697 | All Organisms → cellular organisms → Bacteria | 608 | Open in IMG/M |
| Ga0302260_1099919 | Not Available | 601 | Open in IMG/M |
| Ga0302260_1102365 | Not Available | 593 | Open in IMG/M |
| Ga0302260_1103053 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 591 | Open in IMG/M |
| Ga0302260_1113329 | Not Available | 563 | Open in IMG/M |
| Ga0302260_1114409 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 560 | Open in IMG/M |
| Ga0302260_1115822 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium | 556 | Open in IMG/M |
| Ga0302260_1128346 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 527 | Open in IMG/M |
| Ga0302260_1129657 | Not Available | 525 | Open in IMG/M |
| Ga0302260_1132371 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella flava | 519 | Open in IMG/M |
| Ga0302260_1132882 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 518 | Open in IMG/M |
| Ga0302260_1140810 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 504 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0302260_1002528 | Ga0302260_10025283 | F083856 | VLDPLAPEIERRFAGARGERLGEIVHAEIPIDGTWYRARLKMQPSACVVVALPSTDGFELALRWNDRWANGDGAPRAATFDDSFLVETNDFALAGVWLDHDVRSGLLASRYVSGQRSERKTAVLLRDARWIHQVCNDEVCAWRPDGELSSDRMADMLAVSLLLASRPVRWASAFSHAAAALGGRSAARVEVGGKPALRIRRRDVEVHVKIVRRLGPGDPGRLRTVISAHRLGSGGETLTLISEGLPRAAWPPPADPSCGTLYIDAHAAALLDAARPSATTVRSHDVEIAFDGALSDHHRMGAAIELAAWWAHDGHAQGPYR |
| Ga0302260_1013554 | Ga0302260_10135541 | F036491 | SSGVMLIGTMLAFFGTAIVITFQLSLIWWAIPVACAVVVLTLAVVRYRRHRRMREALHGATL |
| Ga0302260_1031204 | Ga0302260_10312041 | F014637 | LSPRLIQYQFSYYTEINLLIALGRAKEARVVLDARGGVPPGEVLRLSYWIAEMHLGIAEGKLGIDDAELHDRMRKGLSMTVGRDLLLLCAWAYAQRGELDEARFAWRQAMEREGNQRLEVAMPKLAAWMTEYKQAHPELDEPEPDDDGYPAP |
| Ga0302260_1034898 | Ga0302260_10348982 | F025880 | MDHVEIEIGLGRFEAFTIIGARHDSSVHESVAGALGWLSGRFIASVMSTEVEVRNCTAAIFDVDAEEVMVQWHGSSDELADLLDRLAR |
| Ga0302260_1040771 | Ga0302260_10407713 | F096161 | ASFSSEAGAVLTFLLTFCVKTKSKSGFGAEAPIKQNNFI |
| Ga0302260_1043817 | Ga0302260_10438171 | F017564 | VPAVRVTAVEAYSRLAGIYDEIVVDLPSYDRWAAFLHELWHSDAAAVHAVLDVCCGTG |
| Ga0302260_1053657 | Ga0302260_10536571 | F082778 | MSVPSTIQGPPGVRADLIAELVAVRDAVVGPDGMDPALSRTLSLEDDAVEMCGAVYALPDQFRERGRSGTPLMWPWPWSLFRSGMARRDELLLAAAMLLIAAERIDRSQSGEVPRHLQAVDTAG |
| Ga0302260_1056901 | Ga0302260_10569012 | F030330 | MNALQLVTRHLYFGIDPVHLRSAAERVLNRVHGQPPERAAVALDVLARDFQLSPRDSLAMVEEMVRGGLLERPQPDSDQYVITDKFRLYAQARIVEPMARTRAQMLLTHMGDLAEHFNRTASRNKYEIEELAVYGSFMSREPELPELAIGVTGRRRAPDTRPIVGRATTFTAGREQISRMFE |
| Ga0302260_1057860 | Ga0302260_10578602 | F102124 | VTYAERVTAAELVGTPHGRRPVADKGPPDEHVPYPATATAAAFRTATQLFLDQLKQFTDMTQAAGTTPWTDTAGRPGTELAREVLEHMRSMAEHTPAPTAHLDTFLQELRAKRALIGALQLQLTAFEQQMDILEQALKPLQEWG |
| Ga0302260_1063080 | Ga0302260_10630801 | F075447 | SREKPTHERSTIPPTTSVKDSYLVKDSRLCDAARTGPLRAGHSVSDRKQVNAEMTATLSAELAGRVPPGLVDEIVRAILDESREADQHPVAEITMLEARQRLERFIRARASR |
| Ga0302260_1063421 | Ga0302260_10634211 | F080669 | ETGSADVAFARCRALSWACEKLREFPDRDIVLMLDDDMEVPAETAQALADKARELGCACSAVYATLTAKVAAARWPDHPGLWLVGLGCVAIPRALLLELEARSERFEDGHSFYRAFTWSGPENGSWIAEDFRLSINLGGVHLCPLAVGHIKKGALWPDDVTLERLADDYAREHIAQPKPTGAASPSSQQQQPIGGH |
| Ga0302260_1064058 | Ga0302260_10640581 | F059555 | MNKVNYLALGAVGLIVISVLSPWVEVSISGGSDLNETSQLITVSGISIGYGIFGLLVALLGGVLAYKEYRWAFLAGIINFIDGYGYLHRWFGTGTHDSANYGDVTSRSSVDPKFGLYLFIVASLAFMFFTLKYYKS |
| Ga0302260_1065805 | Ga0302260_10658051 | F045255 | MLWACLIFPSLPLDVFARAQSPDGAAHPFVVSSGGHYPRVV |
| Ga0302260_1069246 | Ga0302260_10692461 | F043652 | MGELLARVWEALTRRIDNFLFGCALTLVCVGLVTLFSASDQSVARVTTQVLSCGFALV |
| Ga0302260_1069480 | Ga0302260_10694801 | F100041 | MTLGDHADAYRQVTEAWKDATEARQITMLDDLQDLLDGIGFDGDEEYELRGRVERLITEIEDELGIDESEP |
| Ga0302260_1075218 | Ga0302260_10752182 | F100041 | LHERDQSGGDCMTLGDHADAYRQAKEAWKDATEARQIIMLDDLQDLLDGIGFDDDEEYELRGRVERLITEIEDELGIDDSEP |
| Ga0302260_1075927 | Ga0302260_10759271 | F084383 | MVAYRVSAAHGFRRRPHDTWPRDRVIGSGTSMRMDLANPEWGHLSEAQIAKRLGRMLGVRFAGNETVGLGGVAGGLAEVGEHAWVALQVEEKHTHPAENVLQYWPWLERSQRRLVLVHVIAPDARKRTGHRTDLTKWLGAMMERVLPGRFTYCRLDLGTDEETAQLKATAVAIAELRRPSKGRALVSGM |
| Ga0302260_1076917 | Ga0302260_10769171 | F062490 | MRGFSGGFFQTLVFFAVAIVLLFGIFTLVSYLAGPVGG |
| Ga0302260_1079949 | Ga0302260_10799492 | F036219 | MRFLWYGVVVVLVIALGVTSIGWYLSAHPGGVRFESCHWDGTDLVLGYTYGSGDTVSTMVHPSGDHVVAQLRVDEGGGNHTTQVLTGQARYPISGG |
| Ga0302260_1080829 | Ga0302260_10808291 | F049598 | MKKLVLVTVIAVAVLAWCAPAFAWPVTLPWWEPSAHFTSVGKIQAVDTTANTVTVRVQLASRGAADYLGDDLTIAVAADAHIFKAAGASLETIALSDLIVGEKLRVEGTIDYSSGSAVFMGKRLVMRRLPLNEIKRFAFRGPVTAVDATAGTLTATMVRVTRALSPYYHAACAFVVAPDVRLWVMKDGWPVRATLADVVAGDKVYAQGGADRSTPSAPVF |
| Ga0302260_1081402 | Ga0302260_10814021 | F028193 | NVSQATHQRELHWEGRAVHWSDARAGEGWEIRHTTATDAHGVPADDAPRLYVSTNGGLSLADAEALALTLLAAYEEAAD |
| Ga0302260_1082822 | Ga0302260_10828221 | F012538 | MSTTLDSDRQQNVTTATGLGPAVVSLHREFQAVLINEEVAGIGRAVAQIVRGDGWHEAKASAVLAAAVVAWLGSDNVQPLGFYANGTGPVEVVSKVGRYYITGFGVESEEEITINACQRHRARFSQSRFDEMDLSKPNARFTMGSP |
| Ga0302260_1085057 | Ga0302260_10850571 | F040773 | VVGGLIFAVLAIVCIVAGGMAMKRRSDYGNSDGDGGMSDAEFRKIEGFDE |
| Ga0302260_1085749 | Ga0302260_10857492 | F017062 | TWCESDRVADDAEVRARLKSWIPEYMPPAGAPVMPIPTEAPAGREDTKPLPLRITRKR |
| Ga0302260_1090299 | Ga0302260_10902992 | F091040 | LFIVLAILGPWLGADSRAPGGWTPTDPDDKLWPDRPETPDPPAGPAK |
| Ga0302260_1093646 | Ga0302260_10936462 | F081920 | TVCVGEGCANRFSDEAGWEGRCPECLALWDDHAAGQHDPPVDGCLLCR |
| Ga0302260_1097697 | Ga0302260_10976971 | F040670 | MNPLVNRHTEAADIGSPPRVDAPTQVVPWADDTSSSISAEDANARYQGELFLPGWLKIELQPTAEQGPGA |
| Ga0302260_1099919 | Ga0302260_10999191 | F060381 | MTRLWDELEVPGRLGEAVRLRAPREGTYWQMKDGLIVRVAAGETVEAAVAAQRALLAL |
| Ga0302260_1102365 | Ga0302260_11023652 | F053329 | IRIAPAGGASWRATGKTPMPLPAENPYAQDPALSRRHAAGVQRETLSPAERVLAPAADAPLHSASARSDGGTYVGQGGGYSGAPTPAIDSGTAHLDPAAKRGEGTYGFPSGPGVGMPGGEHQPAAQQPSVDAAPMPER |
| Ga0302260_1103053 | Ga0302260_11030532 | F080113 | NAVALQRFFAMMKALEPAFKQDDEVAYTWANKERVAKCAIYLESAEAGAKTGTGTIVGCEANSVSSLAVTSTADPNHAVSSSQDPKHLSDVLDLFKKQFERARSNLGK |
| Ga0302260_1113329 | Ga0302260_11133291 | F036491 | MLIGTMLAFFSTAIAITFQLSLIWWSIPLACAVVVLTIAVIRYRRHRRMREAIH |
| Ga0302260_1114409 | Ga0302260_11144092 | F040130 | MPGFLKRTLAVLVGVVLGMAIVSGTSPWRELMKKPDDAPPAPIQREPAPDLRV |
| Ga0302260_1115822 | Ga0302260_11158222 | F043656 | HPWHTRADALMRTNTTVVGPEHELEGMELRMDLEPNESHLRPTITVVDAERRVVGFISHPEQVPGIRVVHG |
| Ga0302260_1128346 | Ga0302260_11283461 | F042447 | RRIIESAQQYMASGGRRRDDARKEAERRAHMSGTQQLLELDGVDEDVLGVLATANIHSPEDLIKTQIEAIATTTGIDMGDLARLRQRAISWLSEVSS |
| Ga0302260_1129657 | Ga0302260_11296572 | F014530 | MSVDKQAGPSDPESPPRPNNLTFMVGWMVFLGIYQIFLAWRLGTFFEGSKGLFREDFGGAAMEPLYAAIGVMALVIAWGGWRLRPWAYRLAWVFQGLVFGLALVVLGLWLAGKDVPIHWLLLDCAFGAYNVWWLTRPDVRRA |
| Ga0302260_1132371 | Ga0302260_11323712 | F024915 | MRTELIPAADVRIGDYVLDERGAPAVVTSTRWQGVGGGVVSIALSNHSDRRVFSGRDLVARAVL |
| Ga0302260_1132882 | Ga0302260_11328821 | F010406 | VDNRGTMRIVVALLLLANLTLFVYTLLPSSGGEGVRLQQQLSPEKIKLLTPQEVAALGPAKVA |
| Ga0302260_1140810 | Ga0302260_11408101 | F080113 | NKNELLLGTRIWPDYPDYNAVALQRYFSLMKALEPAYKQDDEVAYTWGAKGKVTKCSIYLEAAEAGARNGYGAVVGCEANGVSSLAVTSVADPKHPVSLSTDPKHQSDVLELFRKQSERAKLTLSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |