Metagenome Family F081920

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081920
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	55 residues
Representative Sequence	MSVVLEELTICVGDGCANRFPDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Number of Associated Samples	68
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.42 %
% of genes near scaffold ends (potentially truncated)	54.39 %
% of genes from short scaffolds (< 2000 bps)	85.09 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.140 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (50.000 % of family members)
Environment Ontology (ENVO)	Unclassified (35.965 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (85.088 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.71% β-sheet: 7.14% Coil/Unstructured: 82.14%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF12697	Abhydrolase_6	12.28
PF11774	Lsr2	6.14
PF01895	PhoU	2.63
PF07366	SnoaL	2.63
PF08808	RES	2.63
PF00313	CSD	1.75
PF00723	Glyco_hydro_15	1.75
PF13834	DUF4193	1.75
PF09137	Glucodextran_N	1.75
PF02896	PEP-utilizers_C	0.88
PF10011	DUF2254	0.88
PF13546	DDE_5	0.88
PF14535	AMP-binding_C_2	0.88
PF11239	DUF3040	0.88
PF04542	Sigma70_r2	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	3.51
COG5654	Predicted toxin component of a toxin-antitoxin system, contains RES domain	Defense mechanisms [V]	2.63
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.88
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.88
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.88
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.14 %
Unclassified	root	N/A	43.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.14 %
Unclassified	root	N/A	43.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.14 %
Unclassified	root	N/A	43.86 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	47.37 %
Unclassified	root	N/A	43.86 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	45.61 %
Unclassified	root	N/A	43.86 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	40.35 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.86 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2.63 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.75 %
Nakamurellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales	1.75 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.75 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.86 %
Nakamurellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae	1.75 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1.75 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.75 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.88 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.88 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.86 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	1.75 %
Intrasporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium	1.75 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.75 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.88 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.86 %
Intrasporangium chromatireducens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium chromatireducens	1.75 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.75 %
Nakamurella endophytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella endophytica	0.88 %
Nakamurella flava	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella flava	0.88 %
Nocardia seriolae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia seriolae	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908043\|A2_c1_ConsensusfromContig70820	Not Available	714	Open in IMG/M
2124908044\|A5_c1_ConsensusfromContig95966	Not Available	625	Open in IMG/M
3300001400\|JGI20183J14883_100867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1374	Open in IMG/M
3300001424\|JGI20198J14950_1001213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2685	Open in IMG/M
3300001424\|JGI20198J14950_1009650	Not Available	561	Open in IMG/M
3300001424\|JGI20198J14950_1011225	Not Available	514	Open in IMG/M
3300001427\|JGI20200J14955_1001360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4618	Open in IMG/M
3300001427\|JGI20200J14955_1011777	Not Available	885	Open in IMG/M
3300001429\|JGI20202J14951_1005811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1284	Open in IMG/M
3300001429\|JGI20202J14951_1015871	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300001453\|JGI20197J15136_1009189	Not Available	984	Open in IMG/M
3300002162\|JGI24139J26690_1086223	Not Available	564	Open in IMG/M
3300002347\|JGIcombinedJ26865_1003379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2781	Open in IMG/M
3300003369\|JGI24140J50213_10026923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2130	Open in IMG/M
3300003369\|JGI24140J50213_10043032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1624	Open in IMG/M
3300005995\|Ga0066790_10201967	Not Available	849	Open in IMG/M
3300005995\|Ga0066790_10205490	Not Available	841	Open in IMG/M
3300006642\|Ga0075521_10035536	All Organisms → cellular organisms → Bacteria	2117	Open in IMG/M
3300006642\|Ga0075521_10334021	Not Available	732	Open in IMG/M
3300006642\|Ga0075521_10616137	Not Available	534	Open in IMG/M
3300006795\|Ga0075520_1002603	All Organisms → cellular organisms → Bacteria	9017	Open in IMG/M
3300012955\|Ga0164298_10709281	Not Available	707	Open in IMG/M
3300012987\|Ga0164307_11173115	Not Available	635	Open in IMG/M
3300012989\|Ga0164305_11459376	Not Available	605	Open in IMG/M
3300012989\|Ga0164305_11954042	Not Available	534	Open in IMG/M
3300014490\|Ga0182010_10297924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	865	Open in IMG/M
3300014490\|Ga0182010_10790939	Not Available	537	Open in IMG/M
3300014498\|Ga0182019_10079964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1960	Open in IMG/M
3300014498\|Ga0182019_10240419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1187	Open in IMG/M
3300014498\|Ga0182019_10457501	Not Available	879	Open in IMG/M
3300014502\|Ga0182021_10328264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1806	Open in IMG/M
3300015371\|Ga0132258_10519791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2979	Open in IMG/M
3300015374\|Ga0132255_106128922	Not Available	509	Open in IMG/M
3300025427\|Ga0208077_1001682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3022	Open in IMG/M
3300025443\|Ga0208081_1005886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2414	Open in IMG/M
3300025443\|Ga0208081_1010342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1789	Open in IMG/M
3300025461\|Ga0208851_1001807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6860	Open in IMG/M
3300025461\|Ga0208851_1004012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3781	Open in IMG/M
3300025461\|Ga0208851_1009990	All Organisms → cellular organisms → Bacteria	2019	Open in IMG/M
3300025461\|Ga0208851_1016928	Not Available	1452	Open in IMG/M
3300025474\|Ga0208479_1025545	Not Available	1241	Open in IMG/M
3300025474\|Ga0208479_1043992	Not Available	897	Open in IMG/M
3300025475\|Ga0208478_1047885	Not Available	812	Open in IMG/M
3300025479\|Ga0208588_1017369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1609	Open in IMG/M
3300025495\|Ga0207932_1038974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1135	Open in IMG/M
3300025495\|Ga0207932_1109517	Not Available	536	Open in IMG/M
3300025499\|Ga0207931_1036181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1037	Open in IMG/M
3300025499\|Ga0207931_1085959	Not Available	589	Open in IMG/M
3300025499\|Ga0207931_1100472	Not Available	532	Open in IMG/M
3300025527\|Ga0208714_1020359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1624	Open in IMG/M
3300025527\|Ga0208714_1101395	Not Available	568	Open in IMG/M
3300025548\|Ga0208716_1003427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5105	Open in IMG/M
3300025650\|Ga0209385_1001072	All Organisms → cellular organisms → Bacteria	11528	Open in IMG/M
3300025878\|Ga0209584_10043325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1582	Open in IMG/M
3300025878\|Ga0209584_10262685	Not Available	662	Open in IMG/M
3300028665\|Ga0302160_10043031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	899	Open in IMG/M
3300028665\|Ga0302160_10082178	Not Available	690	Open in IMG/M
3300028665\|Ga0302160_10179839	Not Available	504	Open in IMG/M
3300028679\|Ga0302169_10085990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	752	Open in IMG/M
3300028679\|Ga0302169_10133313	Not Available	617	Open in IMG/M
3300028732\|Ga0302264_1125290	Not Available	617	Open in IMG/M
3300028736\|Ga0302214_1046112	Not Available	891	Open in IMG/M
3300028740\|Ga0302294_10067642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	846	Open in IMG/M
3300028740\|Ga0302294_10121998	Not Available	640	Open in IMG/M
3300028741\|Ga0302256_10019501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1649	Open in IMG/M
3300028743\|Ga0302262_10057697	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300028764\|Ga0302260_1093646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	621	Open in IMG/M
3300028770\|Ga0302258_1091196	Not Available	735	Open in IMG/M
3300028770\|Ga0302258_1127648	Not Available	622	Open in IMG/M
3300028777\|Ga0302290_10168219	Not Available	581	Open in IMG/M
3300028856\|Ga0302295_1017801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1339	Open in IMG/M
3300028861\|Ga0302259_1058236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	919	Open in IMG/M
3300028868\|Ga0302163_10088748	Not Available	776	Open in IMG/M
3300029923\|Ga0311347_10143798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium chromatireducens	1477	Open in IMG/M
3300029923\|Ga0311347_10806075	Not Available	571	Open in IMG/M
3300029980\|Ga0302298_10073743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1048	Open in IMG/M
3300029980\|Ga0302298_10306323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	529	Open in IMG/M
3300029984\|Ga0311332_10305853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1218	Open in IMG/M
3300029984\|Ga0311332_10436087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium chromatireducens	1021	Open in IMG/M
3300029984\|Ga0311332_10620522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	855	Open in IMG/M
3300029984\|Ga0311332_10969723	Not Available	681	Open in IMG/M
3300029987\|Ga0311334_10060424	Not Available	2715	Open in IMG/M
3300029987\|Ga0311334_10164548	All Organisms → cellular organisms → Bacteria	1680	Open in IMG/M
3300029987\|Ga0311334_10230682	Not Available	1426	Open in IMG/M
3300029989\|Ga0311365_10261914	All Organisms → cellular organisms → Bacteria	1491	Open in IMG/M
3300029989\|Ga0311365_10338126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1300	Open in IMG/M
3300029989\|Ga0311365_10914790	Not Available	758	Open in IMG/M
3300029989\|Ga0311365_11093182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	688	Open in IMG/M
3300029989\|Ga0311365_11598797	Not Available	559	Open in IMG/M
3300029990\|Ga0311336_10372377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1193	Open in IMG/M
3300029990\|Ga0311336_10730332	Not Available	850	Open in IMG/M
3300029990\|Ga0311336_10744115	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300030000\|Ga0311337_10586835	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300030000\|Ga0311337_11221821	Not Available	657	Open in IMG/M
3300030003\|Ga0302172_10214969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	608	Open in IMG/M
3300030014\|Ga0302175_10033117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1098	Open in IMG/M
3300030014\|Ga0302175_10039146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella endophytica	1015	Open in IMG/M
3300030047\|Ga0302286_10672913	Not Available	528	Open in IMG/M
3300030048\|Ga0302273_1190522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	598	Open in IMG/M
3300030050\|Ga0302255_1011567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1595	Open in IMG/M
3300030114\|Ga0311333_10024703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4149	Open in IMG/M
3300030114\|Ga0311333_10292406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1293	Open in IMG/M
3300030294\|Ga0311349_10934497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	814	Open in IMG/M
3300030491\|Ga0302211_10058508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1101	Open in IMG/M
3300030673\|Ga0302287_10058732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1076	Open in IMG/M
3300030838\|Ga0311335_10061522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella flava	2358	Open in IMG/M
3300030838\|Ga0311335_10343002	Not Available	1020	Open in IMG/M
3300030838\|Ga0311335_11369023	Not Available	510	Open in IMG/M
3300031232\|Ga0302323_101390687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	788	Open in IMG/M
3300031521\|Ga0311364_10458485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia seriolae	1291	Open in IMG/M
3300031722\|Ga0311351_10238465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1376	Open in IMG/M
3300031902\|Ga0302322_100524116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1383	Open in IMG/M
3300031902\|Ga0302322_101979687	Not Available	715	Open in IMG/M
3300034281\|Ga0370481_0162163	Not Available	779	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.25%
Host-Associated	Host-Associated	1.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.25%
Plants	Host-Associated → Plants	1.75%

Habitat	Taxonomy	Distribution
Peat	Environmental → Terrestrial → Peat	50.88%
Soil	Environmental → Terrestrial → Soil	47.37%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	50.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.47%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	50.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	35.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.02%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	50.00%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	34.21%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.75%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.88%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908043	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2	Environmental	Open in IMG/M
2124908044	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental	Open in IMG/M
3300001400	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012	Environmental	Open in IMG/M
3300001424	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-092012	Environmental	Open in IMG/M
3300001427	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-092012	Environmental	Open in IMG/M
3300001429	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-092012	Environmental	Open in IMG/M
3300001453	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-092012	Environmental	Open in IMG/M
3300002162	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-21A	Environmental	Open in IMG/M
3300002347	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012 (NGEE Surface samples 415 (1, 2, 3 deep-072012) AP id is 1030520, ASSEMBLY_DATE=20131219)	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300025427	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025443	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025461	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025475	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025479	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025495	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025499	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025548	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300028665	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_3	Environmental	Open in IMG/M
3300028679	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_3	Environmental	Open in IMG/M
3300028732	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_4	Environmental	Open in IMG/M
3300028736	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_3	Environmental	Open in IMG/M
3300028740	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_3	Environmental	Open in IMG/M
3300028741	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_4	Environmental	Open in IMG/M
3300028743	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_4	Environmental	Open in IMG/M
3300028764	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E1_4	Environmental	Open in IMG/M
3300028770	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_4	Environmental	Open in IMG/M
3300028777	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_3	Environmental	Open in IMG/M
3300028856	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_4	Environmental	Open in IMG/M
3300028861	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_4	Environmental	Open in IMG/M
3300028868	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_3	Environmental	Open in IMG/M
3300029923	II_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029980	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_3	Environmental	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300029990	I_Fen_N2 coassembly	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300030003	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_3	Environmental	Open in IMG/M
3300030014	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_3	Environmental	Open in IMG/M
3300030047	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_3	Environmental	Open in IMG/M
3300030048	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N1_3	Environmental	Open in IMG/M
3300030050	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_4	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030491	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_3	Environmental	Open in IMG/M
3300030673	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_4	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031722	II_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300034281	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A2_c1_01068410	2124908043	Soil	MNVVFEELTFCVGDGCVNRFADDGGWEGYCPECLALWDDHAAGQHDSPVDACRLCR
A5_c1_01815620	2124908044	Soil	MNVMLEELTVCVADGCAKRFAADAGWEGFCPSCLALWDDHTAGQHDPSVDVCPLCG
JGI20183J14883_1008673	3300001400	Arctic Peat Soil	VLEELTSCVGEGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR*
JGI20198J14950_10012136	3300001424	Arctic Peat Soil	LTICVGDGCANRFSDEAGWEGRCPECMALWDDHAAGLHDVPVDGCLLCR*
JGI20198J14950_10096501	3300001424	Arctic Peat Soil	MSVVLEELTICVGDGCANRFPDEAGWEGRXPECMALWDDHAAGQHDPPVDGC
JGI20198J14950_10112251	3300001424	Arctic Peat Soil	MSVVLEELTVCVGDGCANRFPDEDGWEGRCPECLALWDDHAAGQHDPPVDGCLLCR*
JGI20200J14955_10013605	3300001427	Arctic Peat Soil	VLMSVVLEELTICVGDGCANRFSDEAGWEGRCPECMALWDDHAAGLHDVPVDGCLLCR*
JGI20200J14955_10117773	3300001427	Arctic Peat Soil	MNVVFEELTFCVGDGCVNRFADDGGCEGYCPECLALWDDHAAGQHDSPVDACR
JGI20202J14951_10058112	3300001429	Arctic Peat Soil	VPMSVVLEELTVCVGDGCANRFSDESGWEGRCPECMALWDDHAAGQHDPPVDGCXLCR*
JGI20202J14951_10158711	3300001429	Arctic Peat Soil	AGCAGFAADQGVVPMNVVFEELTFCVGDGCVNRFADDGGWEGYCPECLALWDDHAAGQHDSPVDACRLCR*
JGI20197J15136_10091892	3300001453	Arctic Peat Soil	MSVVLEELTICVGDGCANRFSDEAGWEGRCPECMALWDDHAAGLHDVPVDGCLLCR*
JGI24139J26690_10862232	3300002162	Arctic Peat Soil	MSVVLEELTICVGDGCTNRFPDEASWEGRCPECMALWDDHAAGLHDVPVDGCLLCR*
JGIcombinedJ26865_10033793	3300002347	Arctic Peat Soil	MSVVLEELTICVGDGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR*
JGI24140J50213_100269234	3300003369	Arctic Peat Soil	VPMSVVLEELTVCVGDGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR*
JGI24140J50213_100430323	3300003369	Arctic Peat Soil	MNVVFEELTFCVGDGCVNRFADDGGCEGYCPECLALWDDHAAGQHDSPVDACRLCR*
Ga0066790_102019672	3300005995	Soil	MSVVLGELTFCVGDGANRFPDADGWEGRCPECLALWDDHAAGQHD
Ga0066790_102054901	3300005995	Soil	MSVLLGELTICIGDGCANRFADEAGWEGYCPSCLALWDDHAAGRHDPPEDICVLCR*
Ga0075521_100355366	3300006642	Arctic Peat Soil	MEDELTFCVGDGCVNCFADDGGWEGYCPECLALWDDHAAGQHDSPVDACRLCR*
Ga0075521_103340212	3300006642	Arctic Peat Soil	MSVVLEELTICVGDGCANRFPDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR*
Ga0075521_106161371	3300006642	Arctic Peat Soil	VPMSVVLEELTSCVGDGCANRFSDEAGWEGRCPECMALWDDHAAGQH
Ga0075520_10026034	3300006795	Arctic Peat Soil	VVLMSVVLEELTICVGDGCANRFPDEAGWEGRCPECMALWDDHAAGLHDVPVDGCLLCR*
Ga0164298_107092811	3300012955	Soil	MSVLLWELTICIGDGCANRFADEAGWEGYCPSCLALWDDHAAGRHDPPEDVCLLCR*
Ga0164307_111731152	3300012987	Soil	LEELTICIGDGCANRFAAEAGWEGYCPSCLALWDDHAAGRHDPPEEDVCLLCR*
Ga0164305_114593761	3300012989	Soil	MSVLLWELTICIGDGCANRFADEAGWEGYCPSCLALWDDHAAGRHDPPEDVCLLCH*
Ga0164305_119540422	3300012989	Soil	MTVVFEELMFCVGGGCVNRVADDGGWEGGRHDSPVDACRLCR*
Ga0182010_102979242	3300014490	Fen	MSAVLGELTVCVGEGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR*
Ga0182010_107909391	3300014490	Fen	MNVVFEELTFCVGDGCVNRFADDGGWEGYCPECLALWDDHAAGQHDSPVDACRLCR*
Ga0182019_100799641	3300014498	Fen	MSVVLGELTVCVGDGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR*
Ga0182019_102404191	3300014498	Fen	MNVMLEELTVCVADGCAKRFAADEGWEGFCPSCLALWDDHTAGQHDPSVDVCPLCG*
Ga0182019_104575013	3300014498	Fen	VVLMSVVLEELTSCVGEGCANRFHDTAGWEGRCPECMALWDDHAAGQH
Ga0182021_103282645	3300014502	Fen	TICVGDGCANRFPDEAGWEGRCPECMALWDDHAAGLHDVPVDGCLLFR*
Ga0132258_105197915	3300015371	Arabidopsis Rhizosphere	MTVVFEELTFCVGDGCVNRFADDGGWEGYCPECLALWDDHAAGQHDSPVDACRLCR*
Ga0132255_1061289222	3300015374	Arabidopsis Rhizosphere	MTVVFEELTFCVGDGCVNRFADDGGWEGYCQECLALWDDHAAGRHDSPVDACRLCR*
Ga0208077_10016824	3300025427	Arctic Peat Soil	MNVVFEELTFCVGDGCVNRFADDGGCEGYCPECLALWDDHAAGQHDSPVDACRLCR
Ga0208081_10058865	3300025443	Arctic Peat Soil	LEELTICVGDGCANRFSDEAGWEGRCPECMALWDDHAAGLHDVPVDGCLLCR
Ga0208081_10103421	3300025443	Arctic Peat Soil	MSVVLEELTICVGDGCANRFPDEAGWEGRCPECMALWDDHATGQHDLPVDG
Ga0208851_10018075	3300025461	Arctic Peat Soil	MNVVFEELTFCVGDGCVNRFADDGGWEGYCPACLALWDDHAAGQHDSPVDACRLCR
Ga0208851_10040125	3300025461	Arctic Peat Soil	MEDELTFCVGDGCVNCFADDGGWEGYCPECLALWDDHAAGQHDSPVDACRLCR
Ga0208851_10099905	3300025461	Arctic Peat Soil	MSVVLEELTVCVGDGCANRFPDEDGWEGRCPECLALWDDHAAGQHDPPVDGCLLCR
Ga0208851_10169282	3300025461	Arctic Peat Soil	MSVVLEELTVCVGDGCANRFHDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0208479_10255451	3300025474	Arctic Peat Soil	MSVLLGELTICIGDGCANRFADEAGWEGYCPSCLALWDDHAAGRHDPPEDVCVLCR
Ga0208479_10439922	3300025474	Arctic Peat Soil	MSVVLEELTICVGDGCANRFPDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0208478_10478851	3300025475	Arctic Peat Soil	MSVVLEELTICVGDGCANRFSDEAGWEGRCPECMALWDDHAAGLHDVP
Ga0208588_10173691	3300025479	Arctic Peat Soil	YRRALAVEVGLVPMSVVLEELTVCVGDGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0207932_10389741	3300025495	Arctic Peat Soil	RMSVVLEELTVCVGDGCANRFPDEDGWEGRCPECLALWDDHAAGQHDPPVDGCLLCR
Ga0207932_11095171	3300025495	Arctic Peat Soil	RCRGWVVLMSVVLEELTICVGEGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0207931_10361812	3300025499	Arctic Peat Soil	MSVVLEELTVCVGDGCANRFSDESGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0207931_10859591	3300025499	Arctic Peat Soil	MSVVLEELTICVGDGCANRFPDEAGWEGRCPECMALWDEHAAGQHDPPVDGCLLCR
Ga0207931_11004721	3300025499	Arctic Peat Soil	MNVVFEELTFCVGDGCVNRFADDGGYEGYCPECLALWDDHAAGQHDSPVDACRLCR
Ga0208714_10203592	3300025527	Arctic Peat Soil	MSVVLEELTICVGDGCANRFHDEEGWEGRCPECLALWDDHAAGQHDPPVDGCPFCR
Ga0208714_11013953	3300025527	Arctic Peat Soil	MSVVLEELTICVGDGCANRFHDEAGWEGRCPECLALWDDHAAGQHD
Ga0208716_10034273	3300025548	Arctic Peat Soil	MSVVLEELTICVGDGCANRFSDEAGWEGRCPDCMALWDDHAAGLHDVPVDGCLLCR
Ga0209385_10010725	3300025650	Arctic Peat Soil	MSVVLEELTICVGDGCTNRFPDEASWEGRCPECMALWDDHAAGLHDVPVDGCLLCR
Ga0209584_100433251	3300025878	Arctic Peat Soil	TICVGEGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0209584_102626852	3300025878	Arctic Peat Soil	AVDVGWYRMSVVLEELTICVGDGCAKRFPDEAGCEGRCPECLALWDDHAAGQHDPPVDGCLLCR
Ga0302160_100430312	3300028665	Fen	MSVVLEEVTSCVGEGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0302160_100821781	3300028665	Fen	MNVVFEELTFCVGDGCVNRFADDGGWEGYCPEFLALWDDHAAGQHDSPVDACRLCR
Ga0302160_101798391	3300028665	Fen	MSVVLEELTICVGDGCANRFPDEAGWEGRCPECMALWDDHAAGLHDVPVDGCLLFR
Ga0302169_100859901	3300028679	Fen	ELTICGGDGCANRFPDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0302169_101333131	3300028679	Fen	MNVVFEELTFCVGDGCVNRFADDGGWEGYCPECLALWDDHAAGQHDSPVDACRLC
Ga0302264_11252901	3300028732	Fen	MNVMLEELTVCVAEGCAKRFAADEGWEGFCPSCLALWDDHTAGQHDPSVDVCPLCG
Ga0302214_10461122	3300028736	Fen	MSVVLEELTICVGDGCANRFPDETGWEGRCPECMALWDDHATGQHDLP
Ga0302294_100676422	3300028740	Fen	MSVVLGELTVCVGEGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0302294_101219982	3300028740	Fen	MSVVLEELTICVGDGCANRFPDEAGWEGRCPECMALWDDHATGQHDLPVDGCLLCR
Ga0302256_100195012	3300028741	Fen	MSAVLGELTVCVGEGCANRFSDETGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0302262_100576974	3300028743	Fen	CRGWVVLMSVVLEELTICVGDGCANRFPDETGWEGRCPECMALWDDHATGQHDLPVDGCLLCR
Ga0302260_10936462	3300028764	Fen	TVCVGEGCANRFSDEAGWEGRCPECLALWDDHAAGQHDPPVDGCLLCR
Ga0302258_10911963	3300028770	Fen	VLEELTICVGDGCANRFPDEAGWEGRCPECMALWDDHAAGQHDLPVDGCLLCR
Ga0302258_11276481	3300028770	Fen	MSVVLEELTICVGDGCANRFPDEAGWEGRCPECMALWDDHAAGQHDLPV
Ga0302290_101682191	3300028777	Fen	MSVVLEELTICVGDGCANRFPDETGWEGRCPECMALWDDHATGQHDLPV
Ga0302295_10178012	3300028856	Fen	MSAVLGELTVCVGEGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0302259_10582361	3300028861	Fen	VGWCRMSAVLEELTVCVGEGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLC
Ga0302163_100887481	3300028868	Fen	MSVVLEELTICVGDGCANRFHDEAGWEGRCPECMALWDDHAAGQHDPP
Ga0311347_101437981	3300029923	Fen	MSAVLGELTVCVGDGCANRFHDEAGWEGRCPECMALWDDHAAGQH
Ga0311347_108060751	3300029923	Fen	MNVMLEELTVCVADGCAKRFAADEGWEGFCPSCLALWDDHTAGQHDPSVDVCPLCG
Ga0302298_100737431	3300029980	Fen	CVAEGCAKRFAADEGWEGFCPSCLALWDDHTAGQHDPSVDVCPLCG
Ga0302298_103063232	3300029980	Fen	VLEELTSCVGEGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0311332_103058532	3300029984	Fen	MSVVLEELTICVGDGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0311332_104360873	3300029984	Fen	MSVVLEELTICVGDGCANRFPDGDGWEGRCPECLALWDDHAAGQRDPPVDGCLLCH
Ga0311332_106205221	3300029984	Fen	LDVEVGWCRMSVVLEELTICVGDGCANRFHDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0311332_109697231	3300029984	Fen	MSVLIEDLTVCVGDGCTNRFADEAGWEGHCPSCLACWDDRARGEHDPPVDACLLCR
Ga0311334_100604241	3300029987	Fen	MRVLLEDLTVCVGDGCANRFADEAGWEGYCPSCLALWDDHAEGEHDPP
Ga0311334_101645483	3300029987	Fen	VVLMSVVLEELTICVGDGCANRFPDETGWEGRCPECMALWDDHATGQHDLPVDGCLLCR
Ga0311334_102306821	3300029987	Fen	MSVVLGELTVCVGEGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDG
Ga0311365_102619144	3300029989	Fen	MSVVLEELTICVGDGCANRFPDEAGWEGRCPECMALWDDHAAGQHDLPVDGWMLALPLKESSA
Ga0311365_103381261	3300029989	Fen	RRALVVEVGLVPMSVVLEELTICVGDGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0311365_109147901	3300029989	Fen	MSVVLEELTICVGDGCANRFHDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLC
Ga0311365_110931822	3300029989	Fen	GVVPMNVVFEELTFCVGDGCVNRFADDGGWEGHCPECLALWDDHAAGQHDSPVDACRLCR
Ga0311365_115987971	3300029989	Fen	TRGGVVPMNVVFEELTFCVGDGCVNRFADDGGSDGYCPECLALWDDHAAGQHDSPVDACRLCR
Ga0311336_103723773	3300029990	Fen	MSVVLEELTICVGDGCANRFPDGDGCEGRCPECLALWDDHAAGQHDPPVDGCLLCH
Ga0311336_107303323	3300029990	Fen	LEELTICVGDGCANRFPDEAGWEGRCPECMALWDDHAAGQHDLPVDGCLLCR
Ga0311336_107441152	3300029990	Fen	MNVVFEELTSCVGDGCVNRFADDGGCEGYCPECLALWDDHAAGQHDSPVDAC
Ga0311337_105868353	3300030000	Fen	MEDELTFCVGDGCVNCFADDGGWEGYCPECLALWDDHAAGQHDSPVD
Ga0311337_112218211	3300030000	Fen	MSVLLEDLTVGVGDGCANRFADEAGWEGYCPSCLACWDDHAEGEHDP
Ga0302172_102149691	3300030003	Fen	VEIGWCRMSAVLGELTICVGDGCANRFPDEAGWEGRCPECLALWDDHAAGQHDPPVDGCLLCR
Ga0302175_100331171	3300030014	Fen	CRGWVVLMSVVLEELTICVGEGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0302175_100391461	3300030014	Fen	MNVMLEELTVCVAEGCAKRFAADEGWEGFCPSCLALWDDHTAGQH
Ga0302286_106729131	3300030047	Fen	MSVVLEELTICVGDGCANRFPDETGWEGRCPECMALWDDHATGQHD
Ga0302273_11905222	3300030048	Bog	YRRALAVEVGLVPMSVVLEELTICVGDGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0302255_10115672	3300030050	Fen	MSAVLGELTVCVGEGCANRFSDEAGWQGRCPECLALWDDHAAGQHDPPVDGCLLCR
Ga0311333_100247035	3300030114	Fen	MSVVLEELTICVGDGCANRFPDETGWEGRCPECMALWDDHATGQHDLPVDGCLLCR
Ga0311333_102924061	3300030114	Fen	MSVVLEELTICVGDGCANRFPDEAGWEGRCPECMALWDDHAAGLHDVPVDG
Ga0311349_109344972	3300030294	Fen	MSVVLEELASCVGDGCANRFPDEAGWEGRCPECMALWDDHATGQHDPP
Ga0302211_100585082	3300030491	Fen	MSAVLGELTVCVGEGCANRFSDEADWQGRCPECLALWDDHAAGQHDPPVDGCLLCR
Ga0302287_100587321	3300030673	Fen	FRCRGWVVLMSVVLEELTSCVGEGCANRFPDESGWEGRCPECLALWDDHAAGQHDPPVDGCLLCR
Ga0311335_100615221	3300030838	Fen	MNVVFEELTFCVGDGCVNRFADDGGCEGYCPECLALWDDHAAGQHDSPD
Ga0311335_103430023	3300030838	Fen	VLMSVVLEEVTICVGDGCANRFPNEAGWEGRCPECMALWDDHATGQHDLPVDGCLLCR
Ga0311335_113690232	3300030838	Fen	MNVMLEELTVCVAEGCAKRFAADEGWEGFCPSCLALWDDHTAGQHDPSVDVCPLC
Ga0302323_1013906871	3300031232	Fen	ICVGDGCANRFPDEAGWEGRCPECMALWDDHAASQHDPPVDGCLLCR
Ga0311364_104584851	3300031521	Fen	ICVGDGCANRFPDEAGWEGRCPECMALWDDHAAGLHDVPVDGCLLFR
Ga0311351_102384651	3300031722	Fen	LMSVVLEEVTSCVGEGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0302322_1005241161	3300031902	Fen	SVVLGELTICVGDGCANRFSDEAGWEGRCPECMALWDDHAAGQHDPPVDGCLLCR
Ga0302322_1019796871	3300031902	Fen	MSVLLEDLTVGVGDGCANRFADEAGWEGYCPSCLACWDDHAEGEHDPPVDVC
Ga0370481_0162163_314_505	3300034281	Untreated Peat Soil	MSRLGVLMSVVLEELTICVGDGCANRFPDEAGWEGRCPECMALWDDHAAGQHDPPVDGCPFCR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081920

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences