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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300027425 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072030 | Ga0207522 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2-10 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 21681810 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 21 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| Not Available | 9 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 4 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007536 | Metagenome / Metatranscriptome | 349 | Y |
| F011785 | Metagenome / Metatranscriptome | 287 | Y |
| F016608 | Metagenome / Metatranscriptome | 246 | Y |
| F019338 | Metagenome / Metatranscriptome | 230 | Y |
| F021340 | Metagenome | 219 | Y |
| F025530 | Metagenome | 201 | Y |
| F031088 | Metagenome / Metatranscriptome | 183 | Y |
| F033196 | Metagenome | 178 | Y |
| F033787 | Metagenome / Metatranscriptome | 176 | N |
| F040716 | Metagenome | 161 | Y |
| F057488 | Metagenome | 136 | N |
| F063749 | Metagenome / Metatranscriptome | 129 | Y |
| F065246 | Metagenome / Metatranscriptome | 128 | Y |
| F068085 | Metagenome | 125 | Y |
| F078804 | Metagenome | 116 | N |
| F082749 | Metagenome / Metatranscriptome | 113 | Y |
| F086233 | Metagenome | 111 | Y |
| F090709 | Metagenome | 108 | Y |
| F099400 | Metagenome / Metatranscriptome | 103 | Y |
| F101793 | Metagenome / Metatranscriptome | 102 | N |
| F102094 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207522_100061 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1633 | Open in IMG/M |
| Ga0207522_100121 | Not Available | 1414 | Open in IMG/M |
| Ga0207522_100518 | Not Available | 976 | Open in IMG/M |
| Ga0207522_100569 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 948 | Open in IMG/M |
| Ga0207522_100597 | Not Available | 937 | Open in IMG/M |
| Ga0207522_100793 | All Organisms → cellular organisms → Bacteria | 856 | Open in IMG/M |
| Ga0207522_100917 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 810 | Open in IMG/M |
| Ga0207522_101042 | Not Available | 781 | Open in IMG/M |
| Ga0207522_101635 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 670 | Open in IMG/M |
| Ga0207522_101670 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 665 | Open in IMG/M |
| Ga0207522_102382 | Not Available | 591 | Open in IMG/M |
| Ga0207522_102679 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 567 | Open in IMG/M |
| Ga0207522_102970 | Not Available | 546 | Open in IMG/M |
| Ga0207522_103384 | Not Available | 523 | Open in IMG/M |
| Ga0207522_103432 | Not Available | 521 | Open in IMG/M |
| Ga0207522_103549 | Not Available | 514 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207522_100061 | Ga0207522_1000613 | F090709 | DPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATN |
| Ga0207522_100121 | Ga0207522_1001211 | F078804 | EKFAEREVGMNFVYATLCSVAVLVLCGATAPAFGYVKKAPTNQSAGKAIKKQASVFDSDGYRLVSPNSTMRCAQTLRGTLDCKE |
| Ga0207522_100472 | Ga0207522_1004721 | F086233 | KMKTIPPETIKLLQTVLDETWETLRPEERSRTSKKQIATRLFDKASAGERDPFRLRIAAVDGIVKFPL |
| Ga0207522_100518 | Ga0207522_1005182 | F068085 | MIVLKYILLFTCLGIGLALCVGVISILRSPPDNGPPAWFAAAFGAMFFWGAFALA |
| Ga0207522_100569 | Ga0207522_1005692 | F033787 | MRLNLKLSLLGCALAGVIASSLPAAADWHKPYIYRESNGSWTNVRYDDGVCNYYFSRNSYDNNMHLNKYGDCSHIAIGPDGMARPVYLTPTPYGAVESYGSGLE |
| Ga0207522_100597 | Ga0207522_1005971 | F099400 | IWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMHRAFGLHLFG |
| Ga0207522_100633 | Ga0207522_1006331 | F082749 | MDGESVDAAGKLGRKRLINHAMTLDAGLSLKGVRHDIDPVVSLPARPVPGMALMLVRFINHFEVLRRESLGQLLCDEIGGSHIARLGERSLPVNGYKQVLKASPVKAHNVRS |
| Ga0207522_100793 | Ga0207522_1007932 | F025530 | STTMQIGEAARDNIAAGIWFAVLAGSLFLYAQSILMTTGLMLELTAAYSTFVLCGKGARSLFVHAVPYAFALAGAVFLCLAPDFPNAVQASLVFLGVTALMHGSVVYSALKNPRETEDPVYASAT |
| Ga0207522_100917 | Ga0207522_1009171 | F007536 | MDMLNLHLRLIRSALGQKAGAKPMGLPHRERSQGRAAMHGHEVASLPGEMGPPLGQSHERASPFLAKFGLSASLTTGRDAAHAVSGAPMALVLPATTSCIQYVRFTDEVPRRLVPVGRVNPGYKSHTKSRGHASETGTAFPRPRLKGCQQRQSRGARLRLAEGACSERQNLRVLLGPLGFMGPVSPTNAAT |
| Ga0207522_101042 | Ga0207522_1010421 | F057488 | TLLAIGLIPGATAQLAVGPVPIMSSINGIPITVSVTSWITVNSVGDETTVDARIFADLIDLQKKFSDVVDSFKRSARNCNRSADGQNPVVSFKSGSLWPRNDQLIMFVRGDIDIWSCSVGPPQSAIRWEKTKVSFLTLKLPVRRTWRNVKRNMDGTQPFHGTLLVSLAEKDGANVALRNTEPNLRLDGEPTFATNANLSLAKTDMNDKVSKTLRSAIDLTKLKDVLPKELQKFNMTVNSARFRDRGGHAIAEINLVGKA |
| Ga0207522_101635 | Ga0207522_1016353 | F063749 | VLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCK |
| Ga0207522_101670 | Ga0207522_1016701 | F021340 | TDQGFFIKFSKAVCPLNMRHSKLQTFQAHRTIARANVARSQFWHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLQDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQEKPATFTWGK |
| Ga0207522_102203 | Ga0207522_1022031 | F102094 | MYVLIIVIGVLSQGASIVPVGVTSQVVGKFKNLDECKAAAKHPTPQVLLRISLS |
| Ga0207522_102382 | Ga0207522_1023821 | F033196 | VKSRRFSSLLASTALALALSSHAGMAQQAGKPAEASIPMPDTTLPPPLTLK |
| Ga0207522_102679 | Ga0207522_1026792 | F031088 | MKLNVLAVALAASAIGAFSANAQVVIEERRDPAVVIEHDRPNTSVTVEKRDGFLGTEKKTITKETTGSGDCSSKTVHKEDITGSKT |
| Ga0207522_102916 | Ga0207522_1029161 | F040716 | RYVLFNNETGGHMRHFPMAAAAILALSVLAVTGHSGLAATPKCNAELRKCNSHCNLVYESGRANRTCRNRCKDNLYVCKARPS |
| Ga0207522_102970 | Ga0207522_1029702 | F019338 | MADGNRTGAFLIVGAIVCLSTAQFVFAQEVDPRCKDIYDKVACTCAVRNGGHVIPPPVGVKREGLKLRPRREAGGTQTLDGGRVAFPKYYRREGLKF |
| Ga0207522_103384 | Ga0207522_1033841 | F101793 | LKTVTLMPSVSTGTDRYDWASGQYQTTTLSLLLTYGPVASRWNVWTLGAYSTSQTSDRTVDGRIMSVSGGLACGLGPMLGGRASVSVEAGYDRYVDSVYPDTSSRGAFGLVLLKVSSF |
| Ga0207522_103432 | Ga0207522_1034321 | F011785 | MKILTTFTAVAALVGGISIAQAQGTMGQTGSGMQAPQATGTGAFCIATSPGGSLNCKYASLAACEKDAEPQNLNCSPNPKKSTTGSKQ |
| Ga0207522_103436 | Ga0207522_1034361 | F016608 | MFTFSSALEPEIRDFLHHNNVPYLVKPFEVGDLISQARRLLQKTHSAVAG |
| Ga0207522_103549 | Ga0207522_1035492 | F065246 | QKIFDQRRFAIRLTPVVQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |