Metagenome / Metatranscriptome Family F063749

Basic Information
Family ID	F063749
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	84 residues
Representative Sequence	MTNLLAVLLAFTAATAAVAKPSPVEPVRSANLIALARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK
Number of Associated Samples	110
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.02 %
% of genes near scaffold ends (potentially truncated)	41.09 %
% of genes from short scaffolds (< 2000 bps)	68.22 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Most Common Taxonomy
Group	Bacteria (81.395 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil (10.853 % of family members)
Environment Ontology (ENVO)	Unclassified (29.457 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.186 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 32.17% β-sheet: 0.00% Coil/Unstructured: 67.83%
Feature Viewer

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Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF11752	DUF3309	32.56
PF04280	Tim44	11.63
PF00072	Response_reg	10.08
PF02518	HATPase_c	10.08
PF07238	PilZ	4.65
PF08448	PAS_4	3.88
PF13426	PAS_9	1.55
PF07883	Cupin_2	0.78
PF00313	CSD	0.78
PF13458	Peripla_BP_6	0.78
PF02049	FliE	0.78
PF06429	Flg_bbr_C	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG4395	Predicted lipid-binding transport protein, Tim44 family	Lipid transport and metabolism [I]	11.63
COG1677	Flagellar hook-basal body complex protein FliE	Cell motility [N]	1.55
COG1256	Flagellar hook-associated protein FlgK	Cell motility [N]	0.78
COG1558	Flagellar basal body rod protein FlgC	Cell motility [N]	0.78
COG1749	Flagellar hook protein FlgE	Cell motility [N]	0.78
COG4786	Flagellar basal body rod protein FlgG	Cell motility [N]	0.78
COG4787	Flagellar basal body rod protein FlgF	Cell motility [N]	0.78

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.40 %
Unclassified	root	N/A	18.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.40 %
Unclassified	root	N/A	18.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.40 %
Unclassified	root	N/A	18.60 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	62.02 %
Unclassified	root	N/A	18.60 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	61.24 %
Unclassified	root	N/A	18.60 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	51.94 %
Unclassified	root	N/A	18.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.60 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	5.43 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.60 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	5.43 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.60 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	4.65 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.78 %
unclassified Afipia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia	0.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.60 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	4.65 %
Afipia sp. P52-10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. P52-10	0.78 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000953\|JGI11615J12901_10248742	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300001430\|JGI24032J14994_101369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1035	Open in IMG/M
3300001976\|JGI24752J21851_1030214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	714	Open in IMG/M
3300001991\|JGI24743J22301_10008411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1809	Open in IMG/M
3300003911\|JGI25405J52794_10001331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4039	Open in IMG/M
3300004020\|Ga0055440_10002421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2809	Open in IMG/M
3300004024\|Ga0055436_10026827	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300004062\|Ga0055500_10010000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1534	Open in IMG/M
3300004070\|Ga0055488_10003764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2106	Open in IMG/M
3300004114\|Ga0062593_100399421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1228	Open in IMG/M
3300004114\|Ga0062593_100687469	Not Available	995	Open in IMG/M
3300004114\|Ga0062593_101347071	Not Available	759	Open in IMG/M
3300004157\|Ga0062590_101364202	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300004463\|Ga0063356_102737879	Not Available	759	Open in IMG/M
3300004479\|Ga0062595_100032409	All Organisms → cellular organisms → Bacteria	2170	Open in IMG/M
3300004480\|Ga0062592_100151132	All Organisms → cellular organisms → Bacteria	1555	Open in IMG/M
3300004480\|Ga0062592_100239213	All Organisms → cellular organisms → Bacteria	1320	Open in IMG/M
3300004480\|Ga0062592_100901147	Not Available	797	Open in IMG/M
3300004800\|Ga0058861_11429586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300005162\|Ga0066814_10000856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2183	Open in IMG/M
3300005168\|Ga0066809_10008561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1871	Open in IMG/M
3300005290\|Ga0065712_10011077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3592	Open in IMG/M
3300005293\|Ga0065715_10092920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4868	Open in IMG/M
3300005293\|Ga0065715_10098376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3555	Open in IMG/M
3300005294\|Ga0065705_10106258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. P52-10	6841	Open in IMG/M
3300005328\|Ga0070676_10102442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1771	Open in IMG/M
3300005332\|Ga0066388_100350695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2122	Open in IMG/M
3300005332\|Ga0066388_101355756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1231	Open in IMG/M
3300005332\|Ga0066388_103023155	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300005332\|Ga0066388_107400232	Not Available	551	Open in IMG/M
3300005334\|Ga0068869_101082020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	701	Open in IMG/M
3300005335\|Ga0070666_10014238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5063	Open in IMG/M
3300005343\|Ga0070687_100180103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1265	Open in IMG/M
3300005344\|Ga0070661_100498995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	974	Open in IMG/M
3300005455\|Ga0070663_100713783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	853	Open in IMG/M
3300005526\|Ga0073909_10291281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	739	Open in IMG/M
3300005536\|Ga0070697_100517792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1044	Open in IMG/M
3300005544\|Ga0070686_100039393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2945	Open in IMG/M
3300005544\|Ga0070686_100041379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2880	Open in IMG/M
3300005545\|Ga0070695_100090953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2037	Open in IMG/M
3300005549\|Ga0070704_100194333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1633	Open in IMG/M
3300005563\|Ga0068855_100449153	All Organisms → cellular organisms → Bacteria	1407	Open in IMG/M
3300005564\|Ga0070664_100239360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1629	Open in IMG/M
3300005618\|Ga0068864_100726086	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300005713\|Ga0066905_100207124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1472	Open in IMG/M
3300005843\|Ga0068860_100941002	Not Available	881	Open in IMG/M
3300006353\|Ga0075370_10892280	Not Available	543	Open in IMG/M
3300006806\|Ga0079220_10233016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1089	Open in IMG/M
3300006854\|Ga0075425_100214609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2213	Open in IMG/M
3300006871\|Ga0075434_102044210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	578	Open in IMG/M
3300006904\|Ga0075424_100210231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2067	Open in IMG/M
3300006904\|Ga0075424_102850499	Not Available	503	Open in IMG/M
3300006954\|Ga0079219_11981976	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300009162\|Ga0075423_10732804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1044	Open in IMG/M
3300009545\|Ga0105237_11364809	Not Available	715	Open in IMG/M
3300010047\|Ga0126382_10041779	Not Available	2614	Open in IMG/M
3300010359\|Ga0126376_11129962	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300010359\|Ga0126376_11783551	Not Available	653	Open in IMG/M
3300010362\|Ga0126377_10086859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2822	Open in IMG/M
3300010371\|Ga0134125_10318773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1726	Open in IMG/M
3300010399\|Ga0134127_12888595	Not Available	560	Open in IMG/M
3300010400\|Ga0134122_11363025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	721	Open in IMG/M
3300010403\|Ga0134123_12273942	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300012493\|Ga0157355_1001662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1173	Open in IMG/M
3300012501\|Ga0157351_1011148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	827	Open in IMG/M
3300012885\|Ga0157287_1016751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	916	Open in IMG/M
3300012892\|Ga0157294_10004320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2140	Open in IMG/M
3300012914\|Ga0157297_10300769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	604	Open in IMG/M
3300012984\|Ga0164309_10048561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2444	Open in IMG/M
3300013096\|Ga0157307_1036299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	877	Open in IMG/M
3300013102\|Ga0157371_10331772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1105	Open in IMG/M
3300014269\|Ga0075302_1209569	Not Available	502	Open in IMG/M
3300014308\|Ga0075354_1043278	Not Available	807	Open in IMG/M
3300014326\|Ga0157380_10039488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3671	Open in IMG/M
3300015371\|Ga0132258_10817518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2350	Open in IMG/M
3300015371\|Ga0132258_11003100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2110	Open in IMG/M
3300015371\|Ga0132258_12258103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1365	Open in IMG/M
3300015374\|Ga0132255_100537023	All Organisms → cellular organisms → Bacteria	1722	Open in IMG/M
3300015374\|Ga0132255_100590260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1642	Open in IMG/M
3300019356\|Ga0173481_10005639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3347	Open in IMG/M
3300019356\|Ga0173481_10006942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3079	Open in IMG/M
3300019361\|Ga0173482_10000129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	11255	Open in IMG/M
3300019361\|Ga0173482_10001493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4737	Open in IMG/M
3300019361\|Ga0173482_10421591	Not Available	626	Open in IMG/M
3300022737\|Ga0247747_1000799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	3285	Open in IMG/M
3300022880\|Ga0247792_1002687	All Organisms → cellular organisms → Bacteria	2521	Open in IMG/M
3300022886\|Ga0247746_1003195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3004	Open in IMG/M
3300022892\|Ga0247753_1001022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2703	Open in IMG/M
3300022915\|Ga0247790_10000249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	24738	Open in IMG/M
3300022915\|Ga0247790_10019306	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300023062\|Ga0247791_1010552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1360	Open in IMG/M
3300023072\|Ga0247799_1081394	All Organisms → cellular organisms → Bacteria → Proteobacteria	567	Open in IMG/M
3300023077\|Ga0247802_1002497	All Organisms → cellular organisms → Bacteria	2071	Open in IMG/M
3300023261\|Ga0247796_1000191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8399	Open in IMG/M
3300025271\|Ga0207666_1002763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2131	Open in IMG/M
3300025538\|Ga0210132_1003708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1929	Open in IMG/M
3300025911\|Ga0207654_10306083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1082	Open in IMG/M
3300025912\|Ga0207707_10601240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	931	Open in IMG/M
3300025912\|Ga0207707_10652356	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300025918\|Ga0207662_10763431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	680	Open in IMG/M
3300025919\|Ga0207657_10471328	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300025923\|Ga0207681_10642302	Not Available	879	Open in IMG/M
3300025924\|Ga0207694_10219232	All Organisms → cellular organisms → Bacteria	1551	Open in IMG/M
3300025930\|Ga0207701_10465024	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300025941\|Ga0207711_12145466	Not Available	501	Open in IMG/M
3300026047\|Ga0208658_1023781	Not Available	514	Open in IMG/M
3300026088\|Ga0207641_12500613	Not Available	515	Open in IMG/M
3300026787\|Ga0207633_101322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	716	Open in IMG/M
3300026904\|Ga0207584_1000191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1459	Open in IMG/M
3300027385\|Ga0207540_100900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	876	Open in IMG/M
3300027425\|Ga0207522_101635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	670	Open in IMG/M
3300027447\|Ga0207622_102537	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300027523\|Ga0208890_1045357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	688	Open in IMG/M
3300027560\|Ga0207981_1047553	Not Available	783	Open in IMG/M
3300027775\|Ga0209177_10064126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1079	Open in IMG/M
3300027821\|Ga0209811_10089522	Not Available	1095	Open in IMG/M
3300028379\|Ga0268266_10628614	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300028380\|Ga0268265_10174777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1839	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1056160	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300031716\|Ga0310813_10005359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	7929	Open in IMG/M
3300031740\|Ga0307468_100007376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	4011	Open in IMG/M
3300031944\|Ga0310884_10012601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3207	Open in IMG/M
3300032000\|Ga0310903_10547465	Not Available	610	Open in IMG/M
3300032017\|Ga0310899_10026706	All Organisms → cellular organisms → Bacteria	1930	Open in IMG/M
3300032075\|Ga0310890_10001743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	8427	Open in IMG/M
3300032205\|Ga0307472_101249765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	712	Open in IMG/M
3300033412\|Ga0310810_10534992	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.99%
Host-Associated	Host-Associated	31.01%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.12%
Plants	Host-Associated → Plants	30.23%
Aquatic	Environmental → Aquatic	3.88%
Human	Host-Associated → Human	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.12%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.73%
Marine	Environmental → Aquatic → Marine	3.88%
Digestive System	Host-Associated → Human → Digestive System	0.78%
Roots	Host-Associated → Plants → Roots	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.16%
Loam	Environmental → Terrestrial → Soil → Loam	10.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.20%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.20%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.33%
Sand	Environmental → Terrestrial → Soil → Sand	0.78%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.78%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.03%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	20.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.53%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.20%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.10%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.55%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.78%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.78%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	10.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.10%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.10%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.10%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.10%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.10%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.10%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.33%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.33%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.33%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.55%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.55%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.55%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.55%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.78%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.78%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.78%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300001430	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Environmental	Open in IMG/M
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300001989	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5	Host-Associated	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300004070	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012493	Unplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610	Environmental	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300014269	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1	Environmental	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300022737	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300022892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300023062	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4	Environmental	Open in IMG/M
3300023072	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300023261	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6	Environmental	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025538	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026047	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026787	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09K5-12 (SPAdes)	Environmental	Open in IMG/M
3300026904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5-10 (SPAdes)	Environmental	Open in IMG/M
3300027385	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A5-11 (SPAdes)	Environmental	Open in IMG/M
3300027390	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-11 (SPAdes)	Environmental	Open in IMG/M
3300027425	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2-10 (SPAdes)	Environmental	Open in IMG/M
3300027447	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K4-12 (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11615J12901_102487423	3300000953	Soil	MKKLFAAILGLTAATAAAAKPSPIEPVRSANPMVLARVSAEFNIGPAGATLERNYFRAPESDSHSRLYLCRFEPSMFAKVRLTQSCR*
JGI24032J14994_1013691	3300001430	Corn, Switchgrass And Miscanthus Rhizosphere	LLLERGDRPMKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAGFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR*
JGI24752J21851_10302143	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	LERGDRPMKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR*
JGI24739J22299_1000235810	3300001989	Corn Rhizosphere	AAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR*
JGI24743J22301_100084112	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	MKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAXFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR*
JGI25405J52794_100013316	3300003911	Tabebuia Heterophylla Rhizosphere	MKSLLALVLALTAAAAIAKPSPVEPVRSTNPIALARASAEFNIGPAGATLERNYFRAPEADSRSGICRFDPNMFAKVRLTQSCR*
Ga0055440_100024213	3300004020	Natural And Restored Wetlands	MKNLFAVILVLTAATATVAKPSPIEPVRSANPMALAGVSAEFNIGPAGAALERNYFRASKSNFHLGLYLCRFEQSMFAKVRLTQSCK*
Ga0055436_100268272	3300004024	Natural And Restored Wetlands	MKNLFAVILVLTAATATVAKPSPIEPVRSANPMALARVSAEFNIGPAGAALERNYFRASKSNFHLGLYLCRFEQSMFAKVRLTQSCK*
Ga0055500_100100002	3300004062	Natural And Restored Wetlands	MKNLFAVILALTAATAAVAKPSPIEPVRSANPIALARVSAEFNIGPAGATLERNYFRAPESDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0055488_100037641	3300004070	Natural And Restored Wetlands	MKNLFAVILVLTAATATVAKPSSIEPVRSANPMALAGVSAEFNIGPAGAALERNYFRASKSNFHLGLYLCRFEQSMFAKVRLTQSCK*
Ga0062593_1003994213	3300004114	Soil	MKSLLGVALVLAATPAVAKPSPVDLVHSANPMALARTSADFNIGPAGATLEPNYFRAPEADSRLGLYLCRFEPSMFAKVRLTQSCR*
Ga0062593_1006874691	3300004114	Soil	MKNLFAVILALTAATAAVAKPSPIEPVRSGNPMALARVSAEFNIGPAGATLERNYFRAPESDSRSGLYICRFEPSMFAKVRLTQSCR*
Ga0062593_1013470711	3300004114	Soil	MKNLLVVLLVFTATTAATAKPSPIEPARSANPTAIARASEEFNIGPAGATIERNYFRAPEADSHSGLYLCRFEPSMFAKIRLTQSCR*
Ga0062590_1013642021	3300004157	Soil	MKNLFAVILALTAATDAVAKPSPIEPVRSANPMALARVSAEFNIGPGASLERNYFRAPESDSHSALYLCRFEPSMFAKVRLTQSCR*
Ga0063356_1027378792	3300004463	Arabidopsis Thaliana Rhizosphere	MKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAGFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMF
Ga0062595_1000324092	3300004479	Soil	MKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR*
Ga0062592_1001511321	3300004480	Soil	MKNLLAFILVLTAATAATAKPSPVEPARSANPIALARASAEFNIGVAGATLERNYFRAPENDSRSGPYLCRFEPSMFAKVRLTQSCR*
Ga0062592_1002392132	3300004480	Soil	MKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMF
Ga0062592_1009011472	3300004480	Soil	MKSLLGVALALCVTPAAAKPSPIELVHSANPMAFARTSADFNIGPAGATLERNYFRAPEADSRLGLYLCRFEPSMFAKVRLTQSCR*
Ga0058861_114295861	3300004800	Host-Associated	LVLVLALAATTAAAKPSPVEPARSANPIALARTSAGFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR*
Ga0066814_100008563	3300005162	Soil	MTNLLAVLLAFTAATAAVAKPSPVEPVRSANLIALARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0066809_100085611	3300005168	Soil	MKSLLAVALALAVTPAAAKPSPVEFVHSANPVALARASAEFNIRPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKMRLTQSCK*
Ga0065712_100110773	3300005290	Miscanthus Rhizosphere	MTNLLVVLLAFTAATAAVAKPSPVEPVRSANLIARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0065715_100929203	3300005293	Miscanthus Rhizosphere	MKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAGFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR*
Ga0065715_100983763	3300005293	Miscanthus Rhizosphere	MTNLLAVLLAFTAATAAVAKPSPVEPVRSANLIARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0065705_101062589	3300005294	Switchgrass Rhizosphere	MTNLLAVLLAFTAATAAVAKPSPVEPLRSANLVALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0070676_101024421	3300005328	Miscanthus Rhizosphere	MTNLLAVLLAFTAATAAVAKPSPVEPLRSANLIALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0066388_1003506953	3300005332	Tropical Forest Soil	MKGLIVLVLALATTPAAAKPSPVEPVRSTNSIALARVSAEFNIGPAGATLERNYFRGPEADSRSGLYLCRVEPDMFAKVRLTQSCR*
Ga0066388_1013557562	3300005332	Tropical Forest Soil	MKSLLALVLALTTAAAIAKPSPVEPVRSTNPIALARASAEFNIGPAGASLERNYFRAPEADSRSGICRFEPNMFAKVRLTQSCR*
Ga0066388_1030231551	3300005332	Tropical Forest Soil	MKSLLALVLALTTAAAIAKPSPVEPVRSANPIALAPASAEFNIGPAGATLERNYFRAPDTDSRSGLYLCRVEPSMFAKVLLTQSCR*
Ga0066388_1074002321	3300005332	Tropical Forest Soil	MKNLIVLVLALAATGAAAKPSPVEPVRSESSVARASAEFNTGPAGATLERNYFRGPEADSRSRLYFCRAEPDMFAKVRLTQACR*
Ga0068869_1010820201	3300005334	Miscanthus Rhizosphere	RMTNLLVVLLAFTAATAAVAKPSPVEPLRSANLIALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0070666_100142383	3300005335	Switchgrass Rhizosphere	MKSLLVLVLALAATTAAAKPSPVEPARSANPIALARTSAGFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR*
Ga0070687_1001801033	3300005343	Switchgrass Rhizosphere	FTATTAATAKPSPIEPARSANPTAIARASEEFNIGPAGATIERNYFRAPEADSHSGLYLCRFEPSMFAKIRLTQSCR*
Ga0070661_1004989951	3300005344	Corn Rhizosphere	TAAVAKPSPVEPLRSANLVALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0070663_1007137833	3300005455	Corn Rhizosphere	MKNLLAIILVLTVATAATAKPSPVEPARSANPIALARASAEFNIGPAGATLERNYFRAPEANSPRGLYLCRVEPNMFAKMRLTQFCR*
Ga0073909_102912811	3300005526	Surface Soil	VAKPSPVEPLRSANLVALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0070697_1005177921	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTNLLVVLLAFTAATAAVAKPSPVEPLRSANLIALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0070686_1000393933	3300005544	Switchgrass Rhizosphere	MTNLLVVLLAFTAATAAVAKPSPVEPVRSANLIALARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0070686_1000413793	3300005544	Switchgrass Rhizosphere	MKNLLVVLLVFTATTAATSKPSPIEPARSANPTAIARASEEFNIGPAGATIERNYFRAPEADSHSGLYLCRFEPSMFAKIRLTQSCR*
Ga0070695_1000909533	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	AVLLAFTAATAAVAKPSPVEPLRSANLVALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0070704_1001943331	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VLLAFTAATAAVAKPSPVEPVRSANLIARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0068855_1004491532	3300005563	Corn Rhizosphere	MTNLLVVLLAFTAATAAVAKPSPVEPLRSANLVALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMF
Ga0070664_1002393603	3300005564	Corn Rhizosphere	AATAKPSPIEPARSANPTAIARASEEFNIGPAGATIERNYFRAPEADSHSGLYLCRFEPSMFAKIRLTQSCR*
Ga0068864_1007260861	3300005618	Switchgrass Rhizosphere	MTNLLVVLLAFTAATAAVAKPSPVEPLRSANLIALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAK
Ga0066905_1002071243	3300005713	Tropical Forest Soil	MKSLLALVLALTTAAAIAKPSPVEPVRSANPIALAPASAEFNIGPAGATLERNYFRAPDTDSRSGLYLCRVEPSMFAKVRLTQSCR*
Ga0068860_1009410022	3300005843	Switchgrass Rhizosphere	MKNLLVVLLVFTATTAATAKPSPIEPARSANPTAIARASEEFNIGPAGVTIERNYFRAPEADSHSGLYLCRFEPSMFAKIRLTQS
Ga0075370_108922802	3300006353	Populus Endosphere	MKNLLVVLLVFTATTAATAKPSPIEPARSANPTAIARASEEFNIGPAGATIERNYFRAPEADSHSGLYLCRFEPSMFAKIRLTQSC
Ga0079220_102330163	3300006806	Agricultural Soil	ATAKPSPVEPIRSANPITPARASADFNIAPAGATLERDYFAAPDSGLYLCRFEPNMFAKVRLTQSCK*
Ga0075425_1002146093	3300006854	Populus Rhizosphere	MKRLIVLVLALAATAAAAKPSPVEPVRSANPIALARASVEFNIGPAGATLERNYFRGPEADSRSGLYLCRVEPDMFAKVRLTQSCR*
Ga0075434_1020442103	3300006871	Populus Rhizosphere	AATAAVAKPSPVEPLRSANLIALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0075424_1002102313	3300006904	Populus Rhizosphere	MKNLLVVLLVFTATTAATAKPSPIEPARSANPTAIARASEEFNIGPAGVTIERNYFRAPEADSHSGLYLCRFEPSMFAKIRLTQSCR*
Ga0075424_1028504991	3300006904	Populus Rhizosphere	MKRLIVLVLALAATAAAAKPSPVEPVRSANPIALARASVEFNIGPAGATLERNYFRGPEADSRSGLYLCRVEPD
Ga0079219_119819761	3300006954	Agricultural Soil	MGNLLAVILVLAAATAATAKPSPVEPIRSANPITPARASADFNIAPAGATLERDYFAAPDSGLYLCRFEPNMFAKV
Ga0075423_107328041	3300009162	Populus Rhizosphere	AFTAATAAVAKPSPVEPLRSANLIALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0105237_113648091	3300009545	Corn Rhizosphere	MKNLFAVILALTAATASVAKPSPIEPVRSGNPMALARVSAEFNIGPAGATLERNYFRAPESDSRSGLYICRFEPSMFAKVRLTQSCR*
Ga0126382_100417793	3300010047	Tropical Forest Soil	MKSLLALVLALTTAAAIAKPSPVEPVRSTNPIALARASAEFNIGPAGATLERNYFRAPEADSRSGICRFEPNMFAKVRLTQSCR*
Ga0126376_111299622	3300010359	Tropical Forest Soil	MKSLLVLVLALATTGAAAKPSPVEPVRSANPIALARASAEFNIGPAGATLERNYFRGPEADSRSGLYLCRAEPDMFAKVRLTQSCR*
Ga0126376_117835511	3300010359	Tropical Forest Soil	MKSLLALVLALTTAAAIAKPSLVEPVRSTNPIALARASAEFNIGPAGASLERNYFRAPEADSRSGICRFEPNMFAKVRLTQSCR*
Ga0126377_100868594	3300010362	Tropical Forest Soil	MKSLLVLVLALATTGAAAKPSPVEPVRSTNSIALARVSAEFNIGPAGATLERNYFRGPEADSRSGLYLCRAEPDMFAKVRLTQSCR*
Ga0134125_103187731	3300010371	Terrestrial Soil	MKSLIAVTLAVITATAAVAKPSPMEPGHSANPMALAWASAEFNIGPAGATLERNYFRAPESDSRSGFCRFEPSMFAKVRLTLSCR*
Ga0134127_128885952	3300010399	Terrestrial Soil	MKNLLAFILVLTAATAATAKPSPVEPARSANPIALARASAEFNIGPAGATLERNYFRAPEANSPRGLYLCRVEPNMFAKMRLTQFC
Ga0134122_113630253	3300010400	Terrestrial Soil	AVITATAAVAKPSPMEPGHSANPMALAWASAEFNIGPAGATLERNYFRAPESDSRSGFCRFEPSMFAKVRLTLSCR*
Ga0134123_122739421	3300010403	Terrestrial Soil	GRGVRRMKNLFAVILALTAATAAVAKPSPIEPVRSGNPMALARVSAEFNIGPAGATLERNYFRAPESDSRSGLYICRFEPSMFAKVRLTQSCR*
Ga0157355_10016623	3300012493	Unplanted Soil	MTNLLAVVLAFTAATAAVAKPSPVEPLRSANLIALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0157351_10111483	3300012501	Unplanted Soil	LLAFTAATAAVAKPSPVEPLRSANLIALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0157287_10167513	3300012885	Soil	ATAAVAKPSPVEPVRSANLIARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0157294_100043203	3300012892	Soil	FLLAFTAATAAVAKPSPVEPVRSANLIARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0157297_103007691	3300012914	Soil	AATAATAKPSPVEPSRSANPTALTRASEEFNIGPAGATLERSYFRAPEADSHSGLYLCRFEPSMFVKMRLTQSCR*
Ga0164309_100485611	3300012984	Soil	TNLLAVLLAFTAATAAVAKPSPVEPLRSANLVALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0157307_10362991	3300013096	Soil	SLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR*
Ga0157371_103317721	3300013102	Corn Rhizosphere	LLAVLLAFTAATAAVAKPSPVEPLRSANLVALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0075302_12095692	3300014269	Natural And Restored Wetlands	MKNLFAVILVLTAASATVAKPSPIEPVRPANPMALARVSAEFNIGPAGAALERNYFRASKSNFHLGLYLCRFEQSMFAKVRLTQSCK*
Ga0075354_10432782	3300014308	Natural And Restored Wetlands	MKNLFAVILALTAATAAVAKPSPIEPVRSANPIALARVSAEFNIGPAGATLERNYFRVPESDFHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0157380_100394882	3300014326	Switchgrass Rhizosphere	MTKLLAVLLAFTAATAAVAKPSPVEPVRSANLIALARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0132258_108175182	3300015371	Arabidopsis Rhizosphere	MKSLIVVVLALAATSAAAKPSPVEPVRSANPSALARASAEFNITPAGAMLERNYFRAPEETDARSGLYLCRVEPSIFAKVRLTQSCR*
Ga0132258_110031002	3300015371	Arabidopsis Rhizosphere	MKNLVAVLLAFAATTAATAKPSPIEPARSANPTAIARASEEFNIGPAGATIERNYFRAPEADSHSGLYLCRFEPSMFAKIRLTQSCR*
Ga0132258_122581032	3300015371	Arabidopsis Rhizosphere	MKNLFAVILALTATTAAVAKPSPIEPVRSANPIALARSSAEFNIGPAGATLERNYFRAPESDSHSGLYLCRFEPSMFAKVRLTQSCK*
Ga0132255_1005370231	3300015374	Arabidopsis Rhizosphere	MKNLVAVLLAFAATTAATAKPSPIEPARSANPIAIARASEEFNIGPAGATIERNYFRAPEADSHSGLYLCRFEPSMFAKIRLTQSCR*
Ga0132255_1005902603	3300015374	Arabidopsis Rhizosphere	LALAVTPAAAKPSPVEFVHSANPVALARASAEFNIRPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKMRLTQSCK*
Ga0173481_100056391	3300019356	Soil	MTNLLAVLLAFTAATAAVAKPSPVEPLRSANLIALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK
Ga0173481_100069423	3300019356	Soil	MKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAGFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR
Ga0173482_1000012911	3300019361	Soil	MKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR
Ga0173482_100014933	3300019361	Soil	MTNLLVVLLAFTAATAAVAKPSPVEPVRSANLIARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK
Ga0173482_104215911	3300019361	Soil	MKNLLVVLLVFTATTAATAKPSPIEPARSANPTAIARASEEFNIGPAGATIERNYFRAPEADSHSGLYLCRFEPSMFAKIRLTQSCR
Ga0247747_10007991	3300022737	Soil	MTNLLVVLLAFTAATAAVAKPSPVEPVRSANLIARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMLAKV
Ga0247792_10026875	3300022880	Soil	MTNLLVVLLAFTAATAAVAKPSPVEPVRSANLIARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFA
Ga0247746_10031952	3300022886	Soil	MTNLLVVLLAFTAATAAVAKPSPVEPVRSANLIAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK
Ga0247753_10010221	3300022892	Soil	MTNLLAVLLAFTAATAAVAKPSPVEPLRSANLVALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK
Ga0247790_1000024928	3300022915	Soil	MKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAGFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRL
Ga0247790_100193061	3300022915	Soil	MTNLLVVLLAFTAATAAVAKPSPVEPLRSANLIALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFA
Ga0247791_10105521	3300023062	Soil	MTNLLAVLLAFTAATAAVAKPSPVEPVRSANLIARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK
Ga0247799_10813942	3300023072	Soil	MKSLLGVALALCVTPAAAKPSPIELVHSANPMAFARTSADFNIGPAGATLERNYFRAPEADSRLGLYLCRFEPSMFAKVRLTQSCR
Ga0247802_10024971	3300023077	Soil	MKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATLERNYFRAPEADAHSGVFLCRFEPSMFAKVRLTQSCR
Ga0247796_10001911	3300023261	Soil	MKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRL
Ga0207666_10027632	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	MTNLLVVLLAFTAATAAVAKPSPVEPVRSANLIALARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK
Ga0210132_10037082	3300025538	Natural And Restored Wetlands	MKNLFAVILVLTAATATVAKPSPIEPVRSANPMALAGVSAEFNIGPAGAALERNYFRASKSNFHLGLYLCRFEQSMFAKVRLTQSCK
Ga0207654_103060833	3300025911	Corn Rhizosphere	MTNLLVVLLAFTAATAAVAKPSPVEPLRSANLIALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK
Ga0207707_106012402	3300025912	Corn Rhizosphere	MKSLLGVALVLAATPAVAKPSPVDLVHSANPMALARTSADFNIGPAGATLEPNYFRAPEADSRLGLYLCRFEPSMFAKVRLTQSCR
Ga0207707_106523562	3300025912	Corn Rhizosphere	MKNLLAIILVLTVATAATAKPSPVEPARSANPIALARASAEFNIGAAGATIERNYFRAPENDSRSGLYLCRFEPSMFAKVRL
Ga0207662_107634311	3300025918	Switchgrass Rhizosphere	LLVVLLVFTATTAATAKPSPIEPARSANPTAIARASEEFNIGPAGATIERNYFRAPEADSHSGLYLCRFEPSMFAKIRLTQSCR
Ga0207657_104713282	3300025919	Corn Rhizosphere	MKNLFAVILALTAATAAVAKPSPIEPVRSGNPMALARVSAEFNIGPAGATLERNYFRAPESDSRSGLYICRFEPSMFAKVRLTQSCR
Ga0207681_106423022	3300025923	Switchgrass Rhizosphere	MTNLLAVLLAFTAATAAVAKPSPVEPVRSANLIALARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK
Ga0207694_102192323	3300025924	Corn Rhizosphere	MKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSC
Ga0207701_104650241	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKNLLVVLLVFTATTAATAKPSPIEPARSANPTAIARASEEFNIGPAGATIERNYFRAPEADSHSGLYLCRFEPSMFAKVRLTQSCR
Ga0207711_121454662	3300025941	Switchgrass Rhizosphere	MTNLLAVLLAFTAATAAVAKPSPVEPLRSANLVALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFA
Ga0208658_10237812	3300026047	Natural And Restored Wetlands	MKNLFAVILALTAATAAVAKPSPIEPVRSANPIALARVSAEFNIGPAGATLERNYFRAPESDSHSGLYLCRFEPSMFAKVRLTQSCK
Ga0207641_125006132	3300026088	Switchgrass Rhizosphere	MTNLLAVLLAFTAATAAVAKPSPVEPVRSANLIARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQS
Ga0207633_1013221	3300026787	Soil	RPMKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATLERNYFRVPEADADSGVFLCRFEPSMFAKVRLTQSCR
Ga0207584_10001911	3300026904	Soil	AAVAKPSPVEPVRSANLIARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK
Ga0207540_1009003	3300027385	Soil	RPMKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR
Ga0207435_1011411	3300027390	Soil	HAAGQTLLLLERGDRPMKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCK
Ga0207522_1016353	3300027425	Soil	VLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCK
Ga0207622_1025371	3300027447	Soil	VLVLALAATTAAAKPSPFEPARSANPIALARTSAGFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR
Ga0208890_10453573	3300027523	Soil	MKSLLALVLALTTTAAIAKPSPVEPVRSANPIALARASAEFNIGPAGATLERNYFRAPEADSHSGLYLCRFEPSMFAKMRLTQSCK
Ga0207981_10475532	3300027560	Soil	MTNLLAVLLAFTAATAAVAKPSPVEPLRSANLVALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKMRLTQSCK
Ga0209177_100641262	3300027775	Agricultural Soil	MKNLLAIILVLTVATAATAKPSPVEPARSANPIALARASAEFNIGPAGATLERNYFRAPEANSPRGLYLCRVEPNMFAKMRLTQFCR
Ga0209811_100895222	3300027821	Surface Soil	MTNLLAVLLAFTAATAAVAKPSPVEPLRSANLVALAHASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCR
Ga0268266_106286142	3300028379	Switchgrass Rhizosphere	MKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCK
Ga0268265_101747771	3300028380	Switchgrass Rhizosphere	MTNLLAVLLAFTAATAAVAKPSPVEPVRSANLIALARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSM
(restricted) Ga0255311_10561602	3300031150	Sandy Soil	MKSLIALVLALTTTAAIAKPSPVESVRSANLIARASAEFNIGPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKVRLTQSCK
Ga0310813_100053599	3300031716	Soil	MKKLFAAILGLTAATAAAAKPSPIEPVRSANPMVLARVSAEFNIGPAGATLERNYFRAPESDSHSRLYLCRFEPSMFAKVRLTQSCR
Ga0307468_1000073765	3300031740	Hardwood Forest Soil	MKSLLALVLALTTAAAIAKPSPVEPVRSTNPIALARASADFNIGSTGATLERNYFRAPETDSRSGLYLCRVEPSMFAKVRLTQSCR
Ga0310884_100126013	3300031944	Soil	LVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR
Ga0310903_105474651	3300032000	Soil	MKSLLAVALALAVTPAAAKPSPVEFVHSANPVALARASAEFNIRPAGATLERNYFRAPETDSHSGLYLCRFEPSMFAKMRLTQSCK
Ga0310899_100267063	3300032017	Soil	MKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLT
Ga0310890_1000174311	3300032075	Soil	KSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR
Ga0307472_1012497651	3300032205	Hardwood Forest Soil	LLLERGDRPMKSLLVLVLALAATTAAAKPSPVEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR
Ga0310810_105349921	3300033412	Soil	MKKLFAAILGLTAATAAAAKPSPIEPVRSANPMVLARVSAEFNIGPAGATLERNYFRAPESDSHSRLYLCRFEPSM

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters