Metagenome / Metatranscriptome Family F099400

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099400
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	46 residues
Representative Sequence	MRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLNLPG
Number of Associated Samples	83
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.84 %
% of genes near scaffold ends (potentially truncated)	31.07 %
% of genes from short scaffolds (< 2000 bps)	80.58 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.252 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil (19.417 % of family members)
Environment Ontology (ENVO)	Unclassified (32.039 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.456 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 50.67% β-sheet: 0.00% Coil/Unstructured: 49.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF13676	TIR_2	9.71
PF12071	DUF3551	8.74
PF04964	Flp_Fap	6.80
PF04392	ABC_sub_bind	6.80
PF00089	Trypsin	3.88
PF07585	BBP7	3.88
PF01717	Meth_synt_2	2.91
PF03992	ABM	1.94
PF01575	MaoC_dehydratas	0.97
PF09939	DUF2171	0.97
PF01546	Peptidase_M20	0.97
PF05050	Methyltransf_21	0.97
PF13452	MaoC_dehydrat_N	0.97
PF14023	DUF4239	0.97
PF00999	Na_H_Exchanger	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	6.80
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	6.80
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	2.91
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.97
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.97
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.97
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.97
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.25 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.25 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.25 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.57 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	43.69 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	41.75 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	17.48 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	8.74 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.97 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	15.53 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	8.74 %
Methylorubrum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum	0.97 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	9.71 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	8.74 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.97 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
Bradyrhizobium sp. AUGA SZCCT0283	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	9.71 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	8.74 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.97 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459019\|G14TP7Y01B390O	Not Available	561	Open in IMG/M
2228664021\|ICCgaii200_c0863380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1495	Open in IMG/M
3300000156\|NODE_c0376811	Not Available	715	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105443375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1441	Open in IMG/M
3300000787\|JGI11643J11755_11651895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1095	Open in IMG/M
3300003911\|JGI25405J52794_10143987	Not Available	542	Open in IMG/M
3300004114\|Ga0062593_100435326	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300004114\|Ga0062593_101234751	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300004114\|Ga0062593_101447939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	737	Open in IMG/M
3300004156\|Ga0062589_100000503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8997	Open in IMG/M
3300004156\|Ga0062589_101975597	Not Available	591	Open in IMG/M
3300004157\|Ga0062590_100462345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1066	Open in IMG/M
3300004479\|Ga0062595_100761342	Not Available	790	Open in IMG/M
3300004479\|Ga0062595_101836217	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300004479\|Ga0062595_102437540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	520	Open in IMG/M
3300004480\|Ga0062592_100260250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1280	Open in IMG/M
3300004480\|Ga0062592_100657743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	903	Open in IMG/M
3300004643\|Ga0062591_102084606	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300005162\|Ga0066814_10004313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1459	Open in IMG/M
3300005164\|Ga0066815_10014474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	1026	Open in IMG/M
3300005295\|Ga0065707_10090502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4107	Open in IMG/M
3300005329\|Ga0070683_101561012	Not Available	635	Open in IMG/M
3300005332\|Ga0066388_108030230	Not Available	527	Open in IMG/M
3300005336\|Ga0070680_100556501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	983	Open in IMG/M
3300005339\|Ga0070660_101250248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	630	Open in IMG/M
3300005353\|Ga0070669_100054600	All Organisms → cellular organisms → Bacteria → Proteobacteria	2926	Open in IMG/M
3300005367\|Ga0070667_100063040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3141	Open in IMG/M
3300005406\|Ga0070703_10005498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3546	Open in IMG/M
3300005530\|Ga0070679_101916533	Not Available	541	Open in IMG/M
3300005713\|Ga0066905_100170966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1591	Open in IMG/M
3300005713\|Ga0066905_100986071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	742	Open in IMG/M
3300005764\|Ga0066903_100718778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1766	Open in IMG/M
3300006353\|Ga0075370_10068287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2030	Open in IMG/M
3300006605\|Ga0074057_12143706	Not Available	850	Open in IMG/M
3300006806\|Ga0079220_10809044	Not Available	710	Open in IMG/M
3300006806\|Ga0079220_11153230	Not Available	634	Open in IMG/M
3300006852\|Ga0075433_10373456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1259	Open in IMG/M
3300006954\|Ga0079219_11381034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	627	Open in IMG/M
3300007076\|Ga0075435_102044619	Not Available	503	Open in IMG/M
3300009092\|Ga0105250_10529856	Not Available	538	Open in IMG/M
3300009094\|Ga0111539_10026368	All Organisms → cellular organisms → Bacteria	7106	Open in IMG/M
3300009101\|Ga0105247_10073698	All Organisms → cellular organisms → Bacteria → Proteobacteria	2140	Open in IMG/M
3300009147\|Ga0114129_13383174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	513	Open in IMG/M
3300010359\|Ga0126376_12943169	Not Available	526	Open in IMG/M
3300010362\|Ga0126377_10037813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4131	Open in IMG/M
3300010362\|Ga0126377_10542829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1200	Open in IMG/M
3300010371\|Ga0134125_10097364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3275	Open in IMG/M
3300010371\|Ga0134125_11134078	Not Available	855	Open in IMG/M
3300010373\|Ga0134128_11878140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	659	Open in IMG/M
3300010375\|Ga0105239_12604517	Not Available	590	Open in IMG/M
3300010399\|Ga0134127_10436910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1304	Open in IMG/M
3300010399\|Ga0134127_10726996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	1035	Open in IMG/M
3300010401\|Ga0134121_12710785	Not Available	541	Open in IMG/M
3300012496\|Ga0157353_1040002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	535	Open in IMG/M
3300012515\|Ga0157338_1003649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	1289	Open in IMG/M
3300012891\|Ga0157305_10247881	Not Available	534	Open in IMG/M
3300012943\|Ga0164241_10717695	Not Available	726	Open in IMG/M
3300012986\|Ga0164304_11569031	Not Available	547	Open in IMG/M
3300014497\|Ga0182008_10028754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2811	Open in IMG/M
3300015371\|Ga0132258_10482218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3097	Open in IMG/M
3300015371\|Ga0132258_11086635	Not Available	2022	Open in IMG/M
3300015372\|Ga0132256_100644061	Not Available	1175	Open in IMG/M
3300015372\|Ga0132256_101793788	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300015373\|Ga0132257_101123681	Not Available	992	Open in IMG/M
3300015373\|Ga0132257_102062849	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300015374\|Ga0132255_100539460	Not Available	1718	Open in IMG/M
3300015374\|Ga0132255_103335626	Not Available	684	Open in IMG/M
3300019356\|Ga0173481_10001207	All Organisms → cellular organisms → Bacteria	6141	Open in IMG/M
3300019356\|Ga0173481_10003010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4325	Open in IMG/M
3300022737\|Ga0247747_1034582	Not Available	598	Open in IMG/M
3300022880\|Ga0247792_1025273	Not Available	1012	Open in IMG/M
3300023073\|Ga0247744_1077859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	572	Open in IMG/M
3300025900\|Ga0207710_10425891	Not Available	683	Open in IMG/M
3300025907\|Ga0207645_10555700	Not Available	779	Open in IMG/M
3300025917\|Ga0207660_10320761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1237	Open in IMG/M
3300025917\|Ga0207660_10582553	Not Available	911	Open in IMG/M
3300025921\|Ga0207652_11628125	Not Available	550	Open in IMG/M
3300025941\|Ga0207711_10048879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3619	Open in IMG/M
3300025941\|Ga0207711_11670679	Not Available	580	Open in IMG/M
3300026035\|Ga0207703_10072075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2855	Open in IMG/M
3300026758\|Ga0207559_102225	Not Available	728	Open in IMG/M
3300026759\|Ga0207527_100727	Not Available	979	Open in IMG/M
3300026764\|Ga0207470_100048	All Organisms → cellular organisms → Bacteria	1728	Open in IMG/M
3300027122\|Ga0207538_1003979	Not Available	790	Open in IMG/M
3300027400\|Ga0207560_106382	Not Available	514	Open in IMG/M
3300027425\|Ga0207522_100597	Not Available	937	Open in IMG/M
3300027447\|Ga0207622_100145	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300027560\|Ga0207981_1016917	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300027765\|Ga0209073_10470011	Not Available	526	Open in IMG/M
3300027876\|Ga0209974_10100952	Not Available	1008	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1012403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1719	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1058820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	812	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10133900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	676	Open in IMG/M
3300031716\|Ga0310813_10012406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5555	Open in IMG/M
3300031716\|Ga0310813_11918048	Not Available	558	Open in IMG/M
3300031820\|Ga0307473_10937071	Not Available	628	Open in IMG/M
3300032000\|Ga0310903_10145462	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300032013\|Ga0310906_10967345	Not Available	610	Open in IMG/M
3300032179\|Ga0310889_10101671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	1224	Open in IMG/M
3300032180\|Ga0307471_100639749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1225	Open in IMG/M
3300033475\|Ga0310811_10007559	All Organisms → cellular organisms → Bacteria → Proteobacteria	13944	Open in IMG/M
3300034692\|Ga0373917_0005777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1373	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.90%
Host-Associated	Host-Associated	27.18%
Engineered	Engineered	2.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.90%
Plants	Host-Associated → Plants	27.18%
Solid Waste	Engineered → Solid Waste	1.94%
Bioremediation	Engineered → Bioremediation	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.71%
Grass	Engineered → Solid Waste → Grass	1.94%
Roots	Host-Associated → Plants → Roots	0.97%
Metal	Engineered → Bioremediation → Metal	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.31%
Loam	Environmental → Terrestrial → Soil → Loam	10.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.88%
Sand	Environmental → Terrestrial → Soil → Sand	2.91%
Composting	Engineered → Solid Waste → Grass → Composting	1.94%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.97%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	26.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.91%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.94%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.97%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.97%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.97%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	19.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.91%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	2.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.94%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.97%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.97%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.97%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.97%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300022737	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300023073	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026751	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2w-12 (SPAdes)	Environmental	Open in IMG/M
3300026758	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K4-12 (SPAdes)	Environmental	Open in IMG/M
3300026759	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3w-12 (SPAdes)	Environmental	Open in IMG/M
3300026764	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2w-11 (SPAdes)	Environmental	Open in IMG/M
3300027122	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-11 (SPAdes)	Environmental	Open in IMG/M
3300027400	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-11 (SPAdes)	Environmental	Open in IMG/M
3300027425	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2-10 (SPAdes)	Environmental	Open in IMG/M
3300027447	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K4-12 (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034692	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.3	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
4MG_01299870	2170459019	Switchgrass, Maize And Mischanthus Litter	MRKLTWIIGLLALGASLDSSLYDGAYTRALVNAIQDMHTAIGLK
ICCgaii200_08633803	2228664021	Soil	MRKFTWIIGLLALGAALDSSLYDGAYTRAFVYMIQDAHRSIGLK
NODE_03768113	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MRAFTWFVALLALCASLDTSLYDGAYTRALVSMVNDAHNAIGLR*
INPhiseqgaiiFebDRAFT_1054433751	3300000364	Soil	MRMAVWIVGLLALATSLDTSLYDGAYTRAFVGMIRDLYAAIGLNRIG*
JGI11643J11755_116518953	3300000787	Soil	MRKFTWIIGLLALGAALDSSLYDGAYTRAFVYMIQDAHRSIGLK*
JGI25405J52794_101439871	3300003911	Tabebuia Heterophylla Rhizosphere	MRIAVWIVGLLALATSLDTSLYDGAYTRAFVGMIRDLYAAIGLNRIG*
Ga0062593_1004353262	3300004114	Soil	MRMLTWIVGLLALGASLDSSLWDGAYTRAFVTMIHDLHTAIGLNLTR*
Ga0062593_1012347512	3300004114	Soil	MRMLTWIIGLLALGASLDSSLYDGAYTRALVNTIQDMHTAIGLKLTG*
Ga0062593_1014479393	3300004114	Soil	LAPMRKFTWIIGLLALGAALDSSLYDGAYTRALVYMIQDAHTAIGLR*
Ga0062589_1000005032	3300004156	Soil	MRMLIWIVGLLALGASLDSSLYDGAYTRALVGKIQDTHTAIGLK*
Ga0062589_1019755971	3300004156	Soil	AMRMLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQDMHTAIGLKMTG*
Ga0062590_1004623451	3300004157	Soil	MLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQDMHTAIGLKMTG*
Ga0062595_1007613422	3300004479	Soil	MRILIWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMHRAFGLHLFG*
Ga0062595_1018362171	3300004479	Soil	MRMLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQDMHTAIGLKLTG*
Ga0062595_1024375401	3300004479	Soil	IWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLNLPG*
Ga0062592_1002602504	3300004480	Soil	MRKFTWIIGLLALGAALDSSLYDGAYTRALVYMIQDAHTAIGLR*
Ga0062592_1006577431	3300004480	Soil	MRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLNLPG*
Ga0062591_1020846062	3300004643	Soil	WIIGLLALGASLDSSLYDGAYTRALVNTIQDMHTAIGLKLTG*
Ga0066814_100043132	3300005162	Soil	MRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKTFGLNLPG*
Ga0066815_100144741	3300005164	Soil	KNCSASLLLMRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLNLPG*
Ga0065707_100905024	3300005295	Switchgrass Rhizosphere	MLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLNLPG*
Ga0070683_1015610122	3300005329	Corn Rhizosphere	LSGIIVAMRMLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQDMHTAIGLKMTG*
Ga0066388_1080302302	3300005332	Tropical Forest Soil	MRIAVWIVGLLALATSLDTSLYDGAYTRAFVGMIGNLYTAIGLNRIG*
Ga0070680_1005565013	3300005336	Corn Rhizosphere	MRKFTWIIGLLALGAALDSSLYDGAYTRALVYMIQDAHTAIGLK*
Ga0070660_1012502482	3300005339	Corn Rhizosphere	MRAFTWFVALLALCASLDTSLYDGAYTRALVSMVNDAHNAIGFK*
Ga0070669_1000546004	3300005353	Switchgrass Rhizosphere	LLLMRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLNLPG*
Ga0070667_1000630404	3300005367	Switchgrass Rhizosphere	MRMLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQDMHTAIGLKMTG*
Ga0070703_100054984	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	LLLMRMLIWIVGLLALATPLDSSLYGGAYTRAFVAMIQDMHKAFGLNLPG*
Ga0070679_1019165332	3300005530	Corn Rhizosphere	MRAFTWFVALLALCASLDTSLYDGAYTRALVSMVNDAHNAIGLK*
Ga0066905_1001709662	3300005713	Tropical Forest Soil	MRIAVWIVGLLALATSLDTSLYDGAYTRAFVGMIGSLYTAIGLNRIG*
Ga0066905_1009860711	3300005713	Tropical Forest Soil	MRKAVWIVGLLALATSLDTSLYDGAYTRAFVGMIGSLYTAIGLNRIG*
Ga0066903_1007187783	3300005764	Tropical Forest Soil	MRMAVWIVGLLALASTLDTSLNDGAYTRALAGMIQDLYAALGLNRIG*
Ga0075370_100682875	3300006353	Populus Endosphere	AAMRMLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQDMHTAIGLKMTG*
Ga0074057_121437062	3300006605	Soil	MRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKTFGLNLPG
Ga0079220_108090441	3300006806	Agricultural Soil	MRPLIWIIGLLALATSLDSSLNDGIYTRAFVGMIQDLNAAFGLNRIG*
Ga0079220_111532302	3300006806	Agricultural Soil	MRMAVWIVGLLALATSLDSSLNGGEYTRAFVSMIQDIPSSIGLQRIS*
Ga0075433_103734562	3300006852	Populus Rhizosphere	MRMAVWIIGLLALATSLDSSLNDGIYTRAFVSMIQDLHTALGLNRIG*
Ga0079219_113810341	3300006954	Agricultural Soil	TIEAHLCAMRAFTWFVALLALCASLDTSLYDGAYTRALVSMVNDAHNAIGLR*
Ga0075435_1020446192	3300007076	Populus Rhizosphere	MRMLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQD
Ga0105250_105298561	3300009092	Switchgrass Rhizosphere	MRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLN
Ga0111539_100263687	3300009094	Populus Rhizosphere	MRMLVWIVGLLALATSLDASLNDGIYTRAFVSMIQDFPATVGLNRIG*
Ga0105247_100736984	3300009101	Switchgrass Rhizosphere	LSGIIAAMRMLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQDMHTAIGLKMTG*
Ga0114129_133831741	3300009147	Populus Rhizosphere	MRMLVWIVGLLALATSLDASLNDGIYTRAFVSMIQD
Ga0126376_129431692	3300010359	Tropical Forest Soil	MAVWIVGLLALASTLDTSLNDGAYTRALAGMIQDLYAALGLNRIG*
Ga0126377_100378133	3300010362	Tropical Forest Soil	MRMAVWIVGLLALASTLDTSLNDGAYTRALVGMIQDLHTALGLNRIG*
Ga0126377_105428292	3300010362	Tropical Forest Soil	MRMAVWIVGLLALATSLDTSLYDGAYTRAFVGMIADLYIALGLNRIG*
Ga0134125_100973644	3300010371	Terrestrial Soil	MFIWIVGLLALATSLDSSLNDGAYTRAFVGLIQDLNAAFGLNRIG*
Ga0134125_111340782	3300010371	Terrestrial Soil	MRILIWIVGLLALGTSLDSSLYGGAYTRAFVTSIQDMHRAFGLHLFG*
Ga0134128_118781403	3300010373	Terrestrial Soil	FTWFVALLALCASLDTSLYDGAYTRALVSMVNDAHNAIGLK*
Ga0105239_126045171	3300010375	Corn Rhizosphere	MRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAF
Ga0134127_104369103	3300010399	Terrestrial Soil	LSGILAPMRKFTWIIGLLALGAALDSSLYDGAYTRALVYMIQDAHTAIGLK*
Ga0134127_107269962	3300010399	Terrestrial Soil	MRMLIWIVGLLALATSLDSSLYGGAYTRVFVAMIQDMHKAFGLNLPG*
Ga0134121_127107851	3300010401	Terrestrial Soil	LSGILAAMRMLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQDMHTAIGLKMTG*
Ga0157353_10400021	3300012496	Unplanted Soil	LLMRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLNLPG*
Ga0157338_10036492	3300012515	Arabidopsis Rhizosphere	VGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLNLPG*
Ga0157305_102478811	3300012891	Soil	MRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLSLPG*
Ga0164241_107176952	3300012943	Soil	MRMLIWIVGLLALGASLDASLWDGAYTRALVGVIQDTHTAIGLK*
Ga0164304_115690311	3300012986	Soil	MRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLNL
Ga0182008_100287545	3300014497	Rhizosphere	MRVFTWFVALLALCASLDTSLYDGAYTRALVGMVNDAHNAIGLR*
Ga0132258_104822183	3300015371	Arabidopsis Rhizosphere	MRMLIWIVGLLALGTSLDSSLYGGAYTRAFVSIIQDTHTAIGLK*
Ga0132258_110866353	3300015371	Arabidopsis Rhizosphere	MAVWIVGLLALASTLDTSLNDGAYTRALAGMIQDLYTALGLNRIG*
Ga0132256_1006440613	3300015372	Arabidopsis Rhizosphere	LSGILAAMRMLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQEMHTAIGLKITG*
Ga0132256_1017937882	3300015372	Arabidopsis Rhizosphere	MRILTWIIGLLALGASLDSSLYDGAYTRALVNTIQDMHTAIGLKLTG*
Ga0132257_1011236813	3300015373	Arabidopsis Rhizosphere	MRMLTWIVGLLALGASLDSSLYDGAYTRALVNTIQDMHTAIGLKLTG*
Ga0132257_1020628492	3300015373	Arabidopsis Rhizosphere	MRMLIWIVGLLVLGTSLDSSLYGGAYTRAFVSIIQDTHTAIGLK*
Ga0132255_1005394605	3300015374	Arabidopsis Rhizosphere	MRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQD
Ga0132255_1033356262	3300015374	Arabidopsis Rhizosphere	LSGIIAAMRMLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQEMHTAIGLKITG*
Ga0173481_100012076	3300019356	Soil	MRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLNLPG
Ga0173481_100030104	3300019356	Soil	MRILIWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMHRAFGLHLFG
Ga0247747_10345821	3300022737	Soil	MRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLNLP
Ga0247792_10252731	3300022880	Soil	MRILIWIVGLLALGTSLDSSLYGGAYTRAFVAMIQDMHKAFGLNLPG
Ga0247744_10778591	3300023073	Soil	SASLLLMRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLNLPG
Ga0207710_104258911	3300025900	Switchgrass Rhizosphere	MRMLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQDMHTAIGLKMTG
Ga0207645_105557001	3300025907	Miscanthus Rhizosphere	MRMLTWIIGLLALGASLDSSLYDGAYTRALVNTIQDM
Ga0207660_103207612	3300025917	Corn Rhizosphere	MRKFTWIIGLLALGAALDSSLYDGAYTRALVYMIQDAHTAIGLK
Ga0207660_105825532	3300025917	Corn Rhizosphere	MRMLIWIVGLLALGASLDSSLYDGAYTRALVGKIQDTHTAIGLK
Ga0207652_116281252	3300025921	Corn Rhizosphere	MRAFTWFVALLALCASLDTSLYDGAYTRALVSMVNDAHNAIGLK
Ga0207711_100488799	3300025941	Switchgrass Rhizosphere	LSGIIAAMRMLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQDMHTAIGLKMTG
Ga0207711_116706791	3300025941	Switchgrass Rhizosphere	LLALAASLDSSLYDGAYTRAFVNAIQDMHTAIGLKMTG
Ga0207703_100720756	3300026035	Switchgrass Rhizosphere	IIAAMRMLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQDMHTAIGLKMTG
Ga0207594_1000861	3300026751	Soil	SLTIVRHPCPMRILIWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMHRAFGLHLFG
Ga0207559_1022252	3300026758	Soil	MRILIWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMH
Ga0207527_1007272	3300026759	Soil	MRILIWIVGLLALGTSLDSSLYDGAYTRALVGKIQDTHTAIGLK
Ga0207470_1000481	3300026764	Soil	LTIVRHPCPMRILIWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMHRAFGLHLFG
Ga0207538_10039791	3300027122	Soil	RHPCPMRILIWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMHRAFGLHLFG
Ga0207560_1063821	3300027400	Soil	MRILIWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMHRA
Ga0207522_1005971	3300027425	Soil	IWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMHRAFGLHLFG
Ga0207622_1001451	3300027447	Soil	PMRILIWIVGLLALGTSLVSSLRGGAYTRAFVTMIQDMHRAFGLHLFG
Ga0207981_10169172	3300027560	Soil	MRMLIWIVGLLVLGTSLDSSLYGGAYTQAFVSMIQDTHAAIGLK
Ga0209073_104700112	3300027765	Agricultural Soil	MRMAVWIVGLLALATSLDSSLNGGEYTRAFVSMIQDIPSSIGLQRIS
Ga0209974_101009521	3300027876	Arabidopsis Thaliana Rhizosphere	MRRLTWIIGLLALGASLDSSLYDGAYTRALVNMIQDMHTAIGLKLTG
(restricted) Ga0255311_10124034	3300031150	Sandy Soil	LFGILGPMRKFTWIIGLLALGAALDSSLYDGAYTRAFVYMIQDAHRAVGLK
(restricted) Ga0255311_10588201	3300031150	Sandy Soil	LIWIVGLLALATSLDSSLYGGAYTRAFVATIQDMRKAFGLNLPG
(restricted) Ga0255310_101339001	3300031197	Sandy Soil	KNRPASLLLMRMLIWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLNLPG
Ga0310813_100124064	3300031716	Soil	MRKLTWIIGLLALGASLDSSLYDGAYTRALVNTIQDMHRAIGLK
Ga0310813_119180481	3300031716	Soil	MRMLTWIIGLLALAASLDSSLYDGAYARAFVNAIQDMHTAIGLKMTG
Ga0307473_109370712	3300031820	Hardwood Forest Soil	MRILIWIVGLLALGTSLDSSLYGGAYTRAFVTSIQDMHRAFGLHLFG
Ga0310903_101454623	3300032000	Soil	MRMLIWIVGLLVLGTSLDSSLYGGAYTRAFVSMIQDTHTAIGLK
Ga0310906_109673452	3300032013	Soil	MRMLIWIVGLLALGTSLDSSLYGGAYTRAFVSMIQDTHTAIGLK
Ga0310889_101016711	3300032179	Soil	IWIVGLLALATSLDSSLYGGAYTRAFVAMIQDMHKAFGLNLPG
Ga0307471_1006397491	3300032180	Hardwood Forest Soil	MRIAVWIVGLLALATSLDTSLYDGAYTRAFVGMIRDLYAAIGLNRIG
Ga0310811_1000755919	3300033475	Soil	LSGIIVAMRMLTWIIGLLALAASLDSSLYDGAYTRAFVNAIQDMHTAIGLKMTG
Ga0373917_0005777_915_1049	3300034692	Sediment Slurry	MRKFTWIIGLLALGAALDSSLYDGAYTRAFVYLIQDAHRAVGLK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters