3300026773: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5-11 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026773
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072071 | Ga0207566
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5-11 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 23673299
• Sequencing Scaffolds: 32
• Novel Protein Genes: 35
• Associated Families: 34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	14
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000466	Metagenome / Metatranscriptome	1105	Y
F001436	Metagenome / Metatranscriptome	695	Y
F005549	Metagenome / Metatranscriptome	397	Y
F007710	Metagenome / Metatranscriptome	346	Y
F013626	Metagenome / Metatranscriptome	269	Y
F015492	Metagenome / Metatranscriptome	254	Y
F016471	Metagenome / Metatranscriptome	247	Y
F018801	Metagenome / Metatranscriptome	233	Y
F020078	Metagenome / Metatranscriptome	226	Y
F020927	Metagenome / Metatranscriptome	221	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207566_100049	All Organisms → cellular organisms → Bacteria → Proteobacteria	1833
Ga0207566_100198	Not Available	1373
Ga0207566_100220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1332
Ga0207566_100340	All Organisms → cellular organisms → Bacteria	1192
Ga0207566_100423	All Organisms → cellular organisms → Bacteria	1128
Ga0207566_100585	Not Available	1018
Ga0207566_101040	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	856
Ga0207566_101124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	833
Ga0207566_101260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	803
Ga0207566_101578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	743

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207566_100049	Ga0207566_1000491	F025757	MSYSTSISLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTTALSLLMSFPGRWSGFGLSIGATLVFLASGLLIGFWVVHRWTEPAQRRESQPGQKA
Ga0207566_100198	Ga0207566_1001982	F034172	MRTIFVFLVAGLIVLLGGASYAADVRLDHKRAHARGAGTFDQRLRVVEQVPYCGNCEAPFGRTHSANVVQLRFINWPFWQERCAVGACGVYYPVMRSCAFWGLGCT
Ga0207566_100220	Ga0207566_1002201	F084203	MRARIRRALWMFGALAFVAMPASAQESTEVAPLTTEDSALLANALVFDPGALATAPKKPLRLPGYRNNEYDITRTQKVDGSTTVVVKQPLQTEWSNSVGADLAPSRPATYPLPLPTEHNNGLPAG
Ga0207566_100340	Ga0207566_1003401	F018801	ARAGGNVTMGLTILSIPFIALGVFLKPYALENSRCVGFAGLGPYCFEQASSMPEVIKYGSVAVGFALLYAGRLQIKRQRDGK
Ga0207566_100423	Ga0207566_1004232	F001436	MNHEQDVATLIELLKMAAERWPRSEAEQVCQSELFREDHSLLEMWPEACRRTGVGRREFPPGVIKLWKQRMGRAN
Ga0207566_100585	Ga0207566_1005851	F039759	LLDTFLPGHRSQDVTLWEGAVFALSSLLFVAASMAPFYGIRRVQNAFQSTFATQVQQVCPAQPPEAMIACWAQFYPWSRVAIDLGAPIVIAVICLVLANRLRHFGRQHFINRLAELKVLPAASTLFLRAFRDDQVRIRRASRNLFSSVFDLGRVPATLDELMLERLDGRGDLIAIGNPQDRKGAARQSPWGAQRLYVDDAHWQETVTMLARDADRIVLCIDASDGVRWEIAHVLQSGHAGKTLFFLNPSTDVQTRKRQLQEDFGVSAADLASIDVDRVLALRTTSTDQLILMVCDKPERDAYLVAARLAFEGRAGNLTMSAKGR
Ga0207566_101040	Ga0207566_1010402	F051990	MRLRIRTVLCGTAIFSAVSFFTITFAETTPFNKAQVADRIRKVENGVDDFEKYLTSRGENAKDQAGSAKSSGAAKRGQGANSANKDA
Ga0207566_101124	Ga0207566_1011242	F000466	VLTYMENWKSWKTAPSQGVVKKDWVPTGRIDFATRLNGTLEESDQPSEFKLLVEERRIVESITGNENLEIQWRLATLNEAKAVVAQYHKYLAENALIRSVSDETVSLPPPKKVQKIQETTAA
Ga0207566_101260	Ga0207566_1012601	F090518	MTKIELEQIDDSILNFNVSDEALESAGDNAVAANYT
Ga0207566_101578	Ga0207566_1015782	F037212	MTNNEIGAADISEPADAIAWRHFWLANVVVESDGRPLVRATRPALQPRKDSLSRRLQRLRHMRAILD
Ga0207566_101615	Ga0207566_1016151	F057488	ADALLVIRDEEGRGMRALLLGTLLAIGLIPGATAQLAVGPVPIMSSINGIPITVSVTSWITVNSVGDETTVDARIFADLIDLQKKFSDVVDSFKRSARNCNRSADGQNPVVSFKSGSLWPRNDQLIMFVRGDIDIWSCSVGPPQSAIRWEKTKVSFLTLKLPVRRTWRNVKRNMDGTQPFHGTLLVSLAEKDGANVALRNTEPNLRLDGEPTFATNANLSLAKTDMNEKVSKMLRSAIDLTKLKDV
Ga0207566_101749	Ga0207566_1017491	F001436	MKRDKDIVALIELLKLAAEQWPHANCEISQTDLFHRNQSLLEMWPEACRRTGVGTREFPPGVIKLWKQSLGRSN
Ga0207566_101911	Ga0207566_1019112	F051112	MPLCSHIVLFESGSTRDASRKIGDAMKNRTSSRAFTLAAIAFAAGFVASAAHAFTVHDSNGQVGGQGYLELDKPAAAPDRMAPVSRFGNENGQTTIKQGNGTFQFGGQRSFD
Ga0207566_102112	Ga0207566_1021121	F095440	MRDAQYLRAQAELCLEVARQISDLKTAENLKAEAARYHAEAAAVEAAEQPGPDGGRPTA
Ga0207566_102662	Ga0207566_1026621	F013626	LGNPAYRMVTVVHFARRHMAIGRRVATAFIRHRVREAAKRLQARYDAQKIARDAKSDIFVVTDFDGTIASQLGQSAGATAFCVFVFGQTGELLAQWHSVPSADELAAAVKK
Ga0207566_102814	Ga0207566_1028142	F040358	MRIAIFALAILAGSGAAEARQVEVVSTSPRHIEIAAWCTAGSNCQQEASDVAQGYCHGPDYPRRALYVRSGLVERGFFSERVIFVYKCNRRSIFCE
Ga0207566_102907	Ga0207566_1029072	F024412	EGRNFKLAFAPSDKPMMDILGTPANRKFVETLLHEISGKDWTLKLTVNEELASRHAAVTEHSPQDFKDEPLIQEAIELFNARVSQER
Ga0207566_102940	Ga0207566_1029401	F103539	SIEGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD
Ga0207566_103239	Ga0207566_1032391	F016471	KKSSKSCSKHKLWTIRLLNCITVCCLMTEADKFGAVKDATVAIGLANKDTKDVISSFGTGFFIGGEYIVSSAHIFSQCIKYNAQNKDMNNGMEGIYSAFNITTNGDQLELNTYHIIKAIRLPPVKEVTGFTGSVDLDIGIGKLDRHSDNFLHIKEPTQLKLYDEIVICGYPSGRISLVLYRNKHEDGMGIHLRPI
Ga0207566_103246	Ga0207566_1032462	F021654	FPDSGISPWVSAGGGFGYFKENSTLEFGGTNPGDTGSATAIFQIGVGLDVKLFSRLSLRGEARDFYAGVPQLNVDIGKSRQHNIFVGAGVVYHF
Ga0207566_103323	Ga0207566_1033232	F030581	MKTQRESRRRVSRFTKMVAKFLHIPDRAAVYVIWAAWIAVVIIIGIIVMLWR
Ga0207566_103479	Ga0207566_1034793	F007710	MTTQRAAAVFDFANYESTTISKKALCQLQDREAQERGARDLQKPAP
Ga0207566_103616	Ga0207566_1036162	F094081	MRDDQGKILKKEFVERFDKAKGRLQQSVPEIQHLLKTSNVVEAARKIIDPAQSIFKQFADDIQLKDLFAKAEALVANLTVAKSVSRDTPPTETSPSETPASKLPSKKASLKKAPSKGVRSRKPLKKTPL
Ga0207566_103775	Ga0207566_1037751	F020927	MWAAFVRQFAAYAITRRGKKLFALIGVLALCFGAALLIDMQFYVSASFAALLAGFAAVTYVVQHVKLKRAEHQRLLRKAEAAHQRALAAQARLERIDTAKSALRGAVTGAGRLVTDNVSIVANEALLMANETA
Ga0207566_103783	Ga0207566_1037832	F053943	VVAPLLHNKEPVKDAAVNVELPQLFTTVTTGADGIACGAATPLPEGLVQPFNVCVTEYAPAVVTLIDEVVAPLLHNNEPVKDVAVNIELPQLSTTDTVGADGIDFGAATPLPEGLVQPLTVCVTEYVPAVVT
Ga0207566_103933	Ga0207566_1039331	F015492	GARAQVFDFGQIEEFESLGSGTQKGGSPPKTIIDDGARHTVLFTILESNTEAKIYWKSKDGSQTTIMRGQGLRAFQTVGEFRIEATGDDSRSFRYGYVLFRLKSEKSAQEDKI
Ga0207566_104056	Ga0207566_1040562	F085355	MDSLKAALTSVKDLLDWLPDLVVALLILAIAVLFALALHRWARKLVRRAIAGRYPF
Ga0207566_104168	Ga0207566_1041681	F031960	GSEPLQTLTADPDAPDADSFSNKDYEFYALKAFITLTRKSHGVVVKTYNACRAE
Ga0207566_104192	Ga0207566_1041922	F038444	MTDLHVEVQGDYIIITLPGTKFMVTYYKAGDPPQLMAKSDWTDDADAPIALGAFRARAWMAASDKARQLGWIE
Ga0207566_104930	Ga0207566_1049302	F045182	ISWYHAVPLHIIPASRDMLHSAKYQDNPVIQKRMDVLKFLDSVWTKGVPLYYWDGRELNPYIGLYHNENLAGWMLAMRNIKGMKSDQIVDEAAAQVRKKMKRVG
Ga0207566_104953	Ga0207566_1049531	F020078	QVDVLFKEFGPTIATAMLQAEKREMRTAIIIRWQSGAIALTAIVLAFLVPGVLLCKLVPLVSIASAIAITTLIAGAGLYLAGRLIEKRTPRSERVDHYLQASIFVIAAGLLWLHVIFQTGAWQDRSIEPGTALAIATGCGIAGALLLIRRTRRLSESK
Ga0207566_104960	Ga0207566_1049602	F053375	MKVTGVSAATILVLAIASPSHAQGIEVFGGYSANADYVQNRPAILILDQKVSPFFSHGSGPNGFEASFKHDVRNGLGIKID
Ga0207566_105198	Ga0207566_1051981	F005549	VYCVAGVLLPRGRGAAEWSVMLKFLRKCTAIPAVKYSIIAITSFLWLVGFADQLPDVEQTVKYVGISLLMLAVAAMA
Ga0207566_105232	Ga0207566_1052321	F044132	DRMAPVNRFGNENGQTTMKQGNSTLQFGGQQSFGQRYNTDNIFNPYARDGR
Ga0207566_105289	Ga0207566_1052892	F084687	MKLVRYRSASSEKPGLILDGEIFDLSGSFAALNPRAPTLD