Metagenome Family F103539

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103539
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	57 residues
Representative Sequence	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSD
Number of Associated Samples	89
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	54.46 %
% of genes near scaffold ends (potentially truncated)	45.54 %
% of genes from short scaffolds (< 2000 bps)	83.17 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.208 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil (8.911 % of family members)
Environment Ontology (ENVO)	Unclassified (26.733 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.505 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 92.86% β-sheet: 0.00% Coil/Unstructured: 7.14%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00196	GerE	26.73
PF05099	TerB	25.74
PF13180	PDZ_2	6.93
PF02738	MoCoBD_1	4.95
PF01764	Lipase_3	1.98
PF00365	PFK	1.98
PF03480	DctP	0.99
PF04392	ABC_sub_bind	0.99
PF13396	PLDc_N	0.99
PF02653	BPD_transp_2	0.99
PF12710	HAD	0.99
PF14707	Sulfatase_C	0.99
PF09335	SNARE_assoc	0.99
PF00232	Glyco_hydro_1	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG3793	Tellurite resistance protein TerB	Inorganic ion transport and metabolism [P]	25.74
COG0205	6-phosphofructokinase	Carbohydrate transport and metabolism [G]	1.98
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.99
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.99
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.99
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	0.99
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.21 %
Unclassified	root	N/A	20.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.21 %
Unclassified	root	N/A	20.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.21 %
Unclassified	root	N/A	20.79 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	75.25 %
Unclassified	root	N/A	20.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.99 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	44.55 %
Unclassified	root	N/A	20.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.99 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.99 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	39.60 %
Unclassified	root	N/A	20.79 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	1.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.99 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	26.73 %
Unclassified	root	N/A	20.79 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.98 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	1.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.79 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	12.87 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	1.98 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.98 %
Phyllobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium	0.99 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.79 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	2.97 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.97 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.98 %
Bradyrhizobium sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium sediminis	1.98 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	1.98 %
unclassified Phyllobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium → unclassified Phyllobacterium	0.99 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.79 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2.97 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	2.97 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.98 %
Bradyrhizobium sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium sediminis	1.98 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	1.98 %
Phyllobacterium sp. KW56	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium → unclassified Phyllobacterium → Phyllobacterium sp. KW56	0.99 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886011\|MRS1b_contig_6765386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1399	Open in IMG/M
2209111006\|2214941340	Not Available	539	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c1685107	All Organisms → cellular organisms → Bacteria → Proteobacteria	571	Open in IMG/M
3300000156\|NODE_c0563396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1332	Open in IMG/M
3300000156\|NODE_c0712572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4894	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1003002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2724	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10101319	Not Available	710	Open in IMG/M
3300002244\|JGI24742J22300_10006027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1998	Open in IMG/M
3300003995\|Ga0055438_10131300	Not Available	730	Open in IMG/M
3300004463\|Ga0063356_100082469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3405	Open in IMG/M
3300004463\|Ga0063356_105345291	All Organisms → cellular organisms → Bacteria → Proteobacteria	551	Open in IMG/M
3300004479\|Ga0062595_101776155	All Organisms → cellular organisms → Bacteria → Proteobacteria	585	Open in IMG/M
3300005093\|Ga0062594_100290775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1234	Open in IMG/M
3300005148\|Ga0066819_1018761	All Organisms → cellular organisms → Bacteria → Proteobacteria	564	Open in IMG/M
3300005160\|Ga0066820_1008789	Not Available	645	Open in IMG/M
3300005332\|Ga0066388_100391468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2036	Open in IMG/M
3300005332\|Ga0066388_101782341	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300005339\|Ga0070660_100708515	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300005340\|Ga0070689_100375328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1197	Open in IMG/M
3300005345\|Ga0070692_10622914	Not Available	717	Open in IMG/M
3300005353\|Ga0070669_100393850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1132	Open in IMG/M
3300005356\|Ga0070674_100204465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1527	Open in IMG/M
3300005365\|Ga0070688_100383452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1036	Open in IMG/M
3300005367\|Ga0070667_100018334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5803	Open in IMG/M
3300005440\|Ga0070705_100564888	All Organisms → cellular organisms → Bacteria → Proteobacteria	874	Open in IMG/M
3300005445\|Ga0070708_101228065	All Organisms → cellular organisms → Bacteria → Proteobacteria	701	Open in IMG/M
3300005455\|Ga0070663_101069405	All Organisms → cellular organisms → Bacteria → Proteobacteria	704	Open in IMG/M
3300005543\|Ga0070672_101175601	All Organisms → cellular organisms → Bacteria → Proteobacteria	683	Open in IMG/M
3300005546\|Ga0070696_101662138	All Organisms → cellular organisms → Bacteria → Proteobacteria	550	Open in IMG/M
3300005563\|Ga0068855_101889398	All Organisms → cellular organisms → Bacteria → Proteobacteria	605	Open in IMG/M
3300005564\|Ga0070664_100444625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1189	Open in IMG/M
3300005713\|Ga0066905_100064155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2327	Open in IMG/M
3300005764\|Ga0066903_101161677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1430	Open in IMG/M
3300005764\|Ga0066903_102306250	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300005764\|Ga0066903_109062561	Not Available	503	Open in IMG/M
3300005843\|Ga0068860_100153624	All Organisms → cellular organisms → Bacteria → Proteobacteria	2218	Open in IMG/M
3300006047\|Ga0075024_100315239	All Organisms → cellular organisms → Bacteria → Proteobacteria	771	Open in IMG/M
3300006195\|Ga0075366_10634898	Not Available	662	Open in IMG/M
3300006353\|Ga0075370_10460935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	765	Open in IMG/M
3300006852\|Ga0075433_10917304	All Organisms → cellular organisms → Bacteria → Proteobacteria	764	Open in IMG/M
3300009094\|Ga0111539_10093600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3530	Open in IMG/M
3300009156\|Ga0111538_12131848	All Organisms → cellular organisms → Bacteria → Proteobacteria	704	Open in IMG/M
3300009174\|Ga0105241_10023396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4582	Open in IMG/M
3300009174\|Ga0105241_10617551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	981	Open in IMG/M
3300010047\|Ga0126382_10146935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1607	Open in IMG/M
3300010358\|Ga0126370_10459748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1064	Open in IMG/M
3300010359\|Ga0126376_11443953	All Organisms → cellular organisms → Bacteria → Proteobacteria	714	Open in IMG/M
3300010359\|Ga0126376_12494503	Not Available	565	Open in IMG/M
3300010360\|Ga0126372_10243541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1537	Open in IMG/M
3300010360\|Ga0126372_10562101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1086	Open in IMG/M
3300010362\|Ga0126377_10066454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3194	Open in IMG/M
3300010366\|Ga0126379_10855931	Not Available	1010	Open in IMG/M
3300010375\|Ga0105239_10232176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2070	Open in IMG/M
3300012476\|Ga0157344_1027680	Not Available	527	Open in IMG/M
3300012481\|Ga0157320_1009579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	733	Open in IMG/M
3300012497\|Ga0157319_1043317	Not Available	534	Open in IMG/M
3300012515\|Ga0157338_1075144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	536	Open in IMG/M
3300012951\|Ga0164300_10043443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1735	Open in IMG/M
3300012961\|Ga0164302_10573906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	812	Open in IMG/M
3300013296\|Ga0157374_10782394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	970	Open in IMG/M
3300014325\|Ga0163163_11027065	All Organisms → cellular organisms → Bacteria → Proteobacteria	888	Open in IMG/M
3300015372\|Ga0132256_101409815	All Organisms → cellular organisms → Bacteria → Proteobacteria	808	Open in IMG/M
3300015374\|Ga0132255_100997767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1256	Open in IMG/M
3300017947\|Ga0187785_10026539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2080	Open in IMG/M
3300017959\|Ga0187779_10001984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	12690	Open in IMG/M
3300017959\|Ga0187779_10079916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1944	Open in IMG/M
3300017974\|Ga0187777_10088719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2021	Open in IMG/M
3300017974\|Ga0187777_10517994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	835	Open in IMG/M
3300025315\|Ga0207697_10144498	All Organisms → cellular organisms → Bacteria → Proteobacteria	1033	Open in IMG/M
3300025549\|Ga0210094_1053138	Not Available	718	Open in IMG/M
3300025885\|Ga0207653_10001851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6761	Open in IMG/M
3300025885\|Ga0207653_10173644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	803	Open in IMG/M
3300025899\|Ga0207642_11001826	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M
3300025907\|Ga0207645_10137891	All Organisms → cellular organisms → Bacteria → Proteobacteria	1589	Open in IMG/M
3300025919\|Ga0207657_10619121	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300025937\|Ga0207669_10451130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1019	Open in IMG/M
3300025940\|Ga0207691_10789976	All Organisms → cellular organisms → Bacteria → Proteobacteria	798	Open in IMG/M
3300025942\|Ga0207689_10139722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1995	Open in IMG/M
3300025949\|Ga0207667_10238378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium → unclassified Phyllobacterium → Phyllobacterium sp. KW56	1862	Open in IMG/M
3300025986\|Ga0207658_11238422	All Organisms → cellular organisms → Bacteria → Proteobacteria	682	Open in IMG/M
3300026067\|Ga0207678_10619897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	949	Open in IMG/M
3300026075\|Ga0207708_10121970	All Organisms → cellular organisms → Bacteria → Proteobacteria	2031	Open in IMG/M
3300026452\|Ga0256821_1007822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1025	Open in IMG/M
3300026753\|Ga0207528_102839	Not Available	623	Open in IMG/M
3300026769\|Ga0207492_101438	Not Available	734	Open in IMG/M
3300026773\|Ga0207566_102940	Not Available	606	Open in IMG/M
3300026805\|Ga0207507_103407	All Organisms → cellular organisms → Bacteria → Proteobacteria	584	Open in IMG/M
3300027400\|Ga0207560_101352	Not Available	849	Open in IMG/M
3300027428\|Ga0207617_101370	Not Available	957	Open in IMG/M
3300027453\|Ga0207624_109210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium sediminis	575	Open in IMG/M
3300027907\|Ga0207428_10625367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	774	Open in IMG/M
3300027915\|Ga0209069_10753639	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300027992\|Ga0247750_1026783	Not Available	606	Open in IMG/M
3300031720\|Ga0307469_11330731	All Organisms → cellular organisms → Bacteria → Proteobacteria	683	Open in IMG/M
3300031740\|Ga0307468_102029944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium sediminis	552	Open in IMG/M
3300032012\|Ga0310902_10002105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6879	Open in IMG/M
3300032174\|Ga0307470_10524623	All Organisms → cellular organisms → Bacteria → Proteobacteria	869	Open in IMG/M
3300032180\|Ga0307471_100289995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1717	Open in IMG/M
3300032180\|Ga0307471_103923491	Not Available	526	Open in IMG/M
3300032205\|Ga0307472_100370278	Not Available	1185	Open in IMG/M
3300032897\|Ga0335071_11912562	Not Available	537	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.43%
Host-Associated	Host-Associated	40.59%
Engineered	Engineered	1.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.48%
Plants	Host-Associated → Plants	40.59%
Aquatic	Environmental → Aquatic	4.95%
Solid Waste	Engineered → Solid Waste	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.84%
Roots	Host-Associated → Plants → Roots	2.97%
Marine	Environmental → Aquatic → Marine	1.98%
Sediment	Environmental → Aquatic → Sediment	1.98%
Grass	Engineered → Solid Waste → Grass	1.98%
Freshwater	Environmental → Aquatic → Freshwater	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.68%
Loam	Environmental → Terrestrial → Soil → Loam	14.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.97%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.98%
Composting	Engineered → Solid Waste → Grass → Composting	1.98%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.99%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.98%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	1.98%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	3.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.97%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.98%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.98%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.98%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	1.98%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886011	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300002244	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1	Host-Associated	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005148	Soil and rhizosphere microbial communities from Laval, Canada - mgLMA	Environmental	Open in IMG/M
3300005160	Soil and rhizosphere microbial communities from Laval, Canada - mgLMB	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012481	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610	Host-Associated	Open in IMG/M
3300012497	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510	Host-Associated	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025549	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026452	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4	Environmental	Open in IMG/M
3300026753	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A4a-12 (SPAdes)	Environmental	Open in IMG/M
3300026769	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1w-11 (SPAdes)	Environmental	Open in IMG/M
3300026773	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5-11 (SPAdes)	Environmental	Open in IMG/M
3300026805	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-A (SPAdes)	Environmental	Open in IMG/M
3300027400	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-11 (SPAdes)	Environmental	Open in IMG/M
3300027428	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-11 (SPAdes)	Environmental	Open in IMG/M
3300027453	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-D (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300027992	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S125-311R-5	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MRS1b_0210.00000130	2162886011	Miscanthus Rhizosphere	MSIEGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD
2214004998	2209111006	Arabidopsis Rhizosphere	MSIEDELLNLARLCRSQARLIKDRAAKQSLRKLGDHYENEAQRLQEQ
ICChiseqgaiiDRAFT_16851072	3300000033	Soil	SEILMSIEDELLNLAXLCXXQARLTXXRAXKXSLRKLGDHYESEAQRLQEQLSADLQKSE
NODE_05633962	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MSIEGELLRLAQLCRSQARLTEDRAVKQALRKLGDHYESEAKKLQGHLSENLPQSD*
NODE_07125726	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MSIEDELLNLARLCRSQARLTHDRTIKQALRKLGDHYQTEAEKLQGQLSLNFQQSD*
AF_2010_repII_A01DRAFT_10030025	3300000580	Forest Soil	MSIEDELLRLAQLCRSQARLTEDRAVKQALRKLGDHYESEAKKLLEHFSANLPQSDQS*
AF_2010_repII_A1DRAFT_101013193	3300000597	Forest Soil	AQLCRSQARLTEDRAVKQALRKLGDHYESEAKKLLEHFSANLPQSDQS*
JGI24742J22300_100060271	3300002244	Corn, Switchgrass And Miscanthus Rhizosphere	GSEILMSIEGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD*
Ga0055438_101313002	3300003995	Natural And Restored Wetlands	MSSIENELLNLARLYRSQARLTRDRAVKQALRTFGEHYESEARKLQEQLAVHLQRSD*
Ga0063356_1000824693	3300004463	Arabidopsis Thaliana Rhizosphere	MSIEGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD*
Ga0063356_1053452911	3300004463	Arabidopsis Thaliana Rhizosphere	MSIEDELLNLARLCRSQARLTKDRAAMQSLRKLGDHYESEAQRLQEQLSADLQKSE*
Ga0062595_1017761552	3300004479	Soil	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSE*
Ga0062594_1002907753	3300005093	Soil	MSIEDELLNLARLCRSQARLTHDRTIKQALRKLGDHYMNEAEKLQAELSPHSRQSE*
Ga0066819_10187611	3300005148	Soil	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDRYEGEAQRLQEQHSADLQKSD*
Ga0066820_10087892	3300005160	Soil	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLCADLQKSD*
Ga0066388_1003914682	3300005332	Tropical Forest Soil	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQKLQEQHSADLQKSD*
Ga0066388_1017823413	3300005332	Tropical Forest Soil	MSIEDELLNLARLCRSQARLTQDRGVKQALRKLGDHYENEAEKLRGQLSAHLQSE*
Ga0070660_1007085152	3300005339	Corn Rhizosphere	DELLNLARLCRSQARLTHDRTIKQALRKLGDHYMNEAEKLQAELSPHSRQSE*
Ga0070689_1003753283	3300005340	Switchgrass Rhizosphere	IEGGIAASEILMSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYEGEAQRLQEQHSADLQKSD*
Ga0070692_106229141	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDQYESEAQRLQEQLSADLQKSE*
Ga0070669_1003938501	3300005353	Switchgrass Rhizosphere	MSIEDELLNLARLCRSQARLIKDRAAKQSLRKLGDHYENEAQRLQEQLSADLQ
Ga0070674_1002044652	3300005356	Miscanthus Rhizosphere	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYENEAQRLQEQLSADLQKSD*
Ga0070688_1003834521	3300005365	Switchgrass Rhizosphere	LNLARLCRSQARLTKDRAAKQSLRKLGDQYESEAQRLQEQLSADLQKSE*
Ga0070667_1000183347	3300005367	Switchgrass Rhizosphere	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYEGEAQRLQEQHSADLQKSD*
Ga0070705_1005648881	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	HEPFRSARIEGGIAASEILMSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYEGEAQRLQEQHSADLQKSD*
Ga0070708_1012280652	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEHLSADLQKSE*
Ga0070663_1010694052	3300005455	Corn Rhizosphere	RQSKNRAPGILMSIEDELLNLARLCRSQARLTHDRTIKQALRKLGDHYMNEAEKLQAELSPHSRQSE*
Ga0070672_1011756012	3300005543	Miscanthus Rhizosphere	ELLNLARLCRSQARLTKDRAAKQSLRKLGDHYEGEAQRLQEQHSADLQKSD*
Ga0070696_1016621382	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	RLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSE*
Ga0068855_1018893982	3300005563	Corn Rhizosphere	NLARLCRSQARLTHDRTIKQALRKLGDHYMNEAEKLQAELSPHSRQSE*
Ga0070664_1004446251	3300005564	Corn Rhizosphere	MSIEDELLNLARLCRSQARLIKDRAAKQSLRKLGDHYENEAQRLQEQLSADLQKSD*
Ga0066905_1000641553	3300005713	Tropical Forest Soil	MSIEDELLRLAQLCRSQARLTEDRAVKQALRKLGDHYESEAKKLQEHFSANLPQSDQS*
Ga0066903_1011616771	3300005764	Tropical Forest Soil	MSIEDELLRLAQLCRSQARLTEDRGVKQALRKLGDHYESEAKKLQGHLSANLPQSD*
Ga0066903_1023062502	3300005764	Tropical Forest Soil	MSIEDELLNLARLCRSQARLTQDRGVKQALRKLGDHYENEAERLRGQLSAHLQQSE*
Ga0066903_1090625611	3300005764	Tropical Forest Soil	PMSIEDELLRLAQLCRSQARLTEDRAVKQALRKLGDHYESEAKKLQEHFSANLPQSDQS*
Ga0068860_1001536244	3300005843	Switchgrass Rhizosphere	MSIEDELLNLARLCRSQARLIKDRAAKQSLRKLGDHYEGEAQRLQEQHSADLQKSD*
Ga0075024_1003152392	3300006047	Watersheds	MATEESSSEILMSIEHELLNLARLCHSQARLTKDRATKQSLRKLGDHYETEAKKLQEQLSADLQQSD*
Ga0075366_106348981	3300006195	Populus Endosphere	EILMSIEGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD*
Ga0075370_104609352	3300006353	Populus Endosphere	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYEGEAQRLQEQLSADLQKSD*
Ga0075433_109173041	3300006852	Populus Rhizosphere	EDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSE*
Ga0111539_100936006	3300009094	Populus Rhizosphere	MSIEDELLNLARLCRSQARLIKDRAAKQSLRKLGDHYENEAQRLQEQLSADLQKSE*
Ga0111538_121318481	3300009156	Populus Rhizosphere	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSEDLQKSE*
Ga0105241_100233961	3300009174	Corn Rhizosphere	LLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSE*
Ga0105241_106175511	3300009174	Corn Rhizosphere	MSIEDELLNLARLCRSQARLTHDRTIKQALRKLGDHYMNEAEKLQAE
Ga0126382_101469352	3300010047	Tropical Forest Soil	MSIEDELLRLAQLCRSQARLTEDRAVKQALRKLGDHYESEAKKLQEHFSANLSQSDQS*
Ga0126370_104597482	3300010358	Tropical Forest Soil	MSIEDELLRLAQLCRSQARLTEDRAVKQALRKLSDHYESEAKKLQEHFSENLPQSDQS*
Ga0126376_114439532	3300010359	Tropical Forest Soil	GILMSIEDELLNLARLCRSQARLTHDRTIKQALRKLGDHYMNEAEKLQAELSPHSRQSE*
Ga0126376_124945032	3300010359	Tropical Forest Soil	MSIEDELLSLARLCRAQARLVQDRTAKQALRKLGDHYEGEAKKLQGHL
Ga0126372_102435411	3300010360	Tropical Forest Soil	MSIEDELLRLAQLCRSQARLTEDRAVKQALRKLSDHYESEAKKLLEHFSANLPQSDQS*
Ga0126372_105621012	3300010360	Tropical Forest Soil	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSD*
Ga0126377_100664544	3300010362	Tropical Forest Soil	MSIEDELLSLARLCRAQARLVQDRTAKQALRKLGDHYEGEAKKLQGHLSANLPRPD*
Ga0126379_108559312	3300010366	Tropical Forest Soil	MSIEDELLRLAQLCRSQARLTEDRAVKQALRNLGDHYESEAKKLLEHFSANLPQSDQS*
Ga0105239_102321763	3300010375	Corn Rhizosphere	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQHSADLQKSD*
Ga0157344_10276801	3300012476	Arabidopsis Rhizosphere	MSIEDELLNLGRLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSE*
Ga0157320_10095792	3300012481	Arabidopsis Rhizosphere	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLHEQLCADLQKSD*
Ga0157319_10433172	3300012497	Arabidopsis Rhizosphere	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLVDHYESEAQRLQEQLSADLQKSE*
Ga0157338_10751441	3300012515	Arabidopsis Rhizosphere	MSIEDELLNLARLCRSQARPTKDRAAKQSLRKLGDHYENEAQRLQEQLSADLQKSE*
Ga0164300_100434433	3300012951	Soil	LNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSE*
Ga0164302_105739062	3300012961	Soil	MSIEDELLNLAKLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSE*
Ga0157374_107823943	3300013296	Miscanthus Rhizosphere	ARIEGGIAASEILMSIEDELLNLARLCRSQARLIKDRAAKQSLRKLGDHYENEAQRLQEQLSADLQKSD*
Ga0163163_110270651	3300014325	Switchgrass Rhizosphere	SPSHEPFRSARIEGGIAASEILMSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSE*
Ga0132256_1014098151	3300015372	Arabidopsis Rhizosphere	LNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLCADLQKSD*
Ga0132255_1009977673	3300015374	Arabidopsis Rhizosphere	EPFRSARIEGGIAASEILMSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLCADLQKSD*
Ga0187785_100265394	3300017947	Tropical Peatland	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQKLQEQLSADLQKSD
Ga0187779_100019841	3300017959	Tropical Peatland	MSIEDELLNLARLCRSQARLTEDRGATQALRKLGDHYENEAKRLQGQLSADLQQSD
Ga0187779_100799164	3300017959	Tropical Peatland	MSIEDELLNLARLCRSQARLSQDRAVKQALRKLGDHYESEAKKLQGQLSADLQRSD
Ga0187777_100887194	3300017974	Tropical Peatland	MSIEDELLNLARLCRSQARLSQDRAVKQALRKLGYHYESEAKKLQGQLSADLQRSD
Ga0187777_105179941	3300017974	Tropical Peatland	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQKLQEQLSADLQTS
Ga0207697_101444981	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYEGEAQRLQEQNSADLQKSD
Ga0210094_10531382	3300025549	Natural And Restored Wetlands	MSSIENELLNLARLYRSQARLTRDRAVKQALRTFGEHYESEARKLQEQLAVHLQRSD
Ga0207653_100018511	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	ARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD
Ga0207653_101736441	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYEGEAQRLQEQLCADLQKSE
Ga0207642_110018262	3300025899	Miscanthus Rhizosphere	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSE
Ga0207645_101378911	3300025907	Miscanthus Rhizosphere	PSHEPFRSARIEGGIAASEILMSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSE
Ga0207657_106191211	3300025919	Corn Rhizosphere	DELLNLARLCRSQARLTHDRTIKQALRKLGDHYMNEAEKLQAELSPHSRQSE
Ga0207669_104511303	3300025937	Miscanthus Rhizosphere	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYEGEAQRLQEQHSADL
Ga0207691_107899761	3300025940	Miscanthus Rhizosphere	ELLNLARLCRSQARLTKDRAAKQSLRKLGDHYEGEAQRLQEQHSADLQKSD
Ga0207689_101397224	3300025942	Miscanthus Rhizosphere	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQK
Ga0207667_102383781	3300025949	Corn Rhizosphere	NLARLCRSQARLTHDRTIKQALRKLGDHYMNEAEKLQAELSPHSRQSE
Ga0207658_112384222	3300025986	Switchgrass Rhizosphere	NLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSEDLQKSE
Ga0207678_106198971	3300026067	Corn Rhizosphere	MSIEDELLNLARLCRSQARLTHDRTIKQALRKLGDHYMNEAEKLQAELSPHSRQSE
Ga0207708_101219703	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSD
Ga0256821_10078222	3300026452	Sediment	MSIENELLNLARLCRSQARLTRDRAVKQALRTLGEHYESEARKPQGQLSAHLQRSD
Ga0207528_1028391	3300026753	Soil	PRNRGSEILMSIEGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD
Ga0207492_1014383	3300026769	Soil	GRRRPRNRGSEILMSIEGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD
Ga0207566_1029401	3300026773	Soil	SIEGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD
Ga0207507_1034071	3300026805	Soil	ARIEGGIAASEILMSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSE
Ga0207560_1013521	3300027400	Soil	MSIVGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD
Ga0207617_1013701	3300027428	Soil	RPRNRGSEILMSIEGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD
Ga0207624_1092102	3300027453	Soil	SEILMSIEGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD
Ga0207428_106253672	3300027907	Populus Rhizosphere	MSIEDELLNLARLCRSQARLIKDRAAKQSLRKLGDHYENEAQRLQEQLSADLQKSD
Ga0209069_107536391	3300027915	Watersheds	VQVNLDRRMATEESSSEILMSIEHELLNLARLCHSQARLTKDRATKQSLRKLGDHYETEAKKLQEQLSADLQQSD
Ga0247750_10267831	3300027992	Soil	MSIEGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSA
Ga0307469_113307312	3300031720	Hardwood Forest Soil	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYEGEAQRLQEQLSADLQKSD
Ga0307468_1020299442	3300031740	Hardwood Forest Soil	MSIEDELLNLARLCHSQARLTQDRAVKHSLRKLGDHYASEAKKLQGQLSAHLQQSD
Ga0310902_1000210510	3300032012	Soil	MSIEGELLNLARLCHSQARLTQERAEKQALRKLGDHYESEAKKLQGQLSAHLQQSD
Ga0307470_105246231	3300032174	Hardwood Forest Soil	IAASEILMSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHYESEAQRLQEQLSADLQKSE
Ga0307471_1002899953	3300032180	Hardwood Forest Soil	MSIEDELLNLARLCRSQARLTKDRAAKQSLRKLGDHNESEAQRLQEQLSADLQKSE
Ga0307471_1039234912	3300032180	Hardwood Forest Soil	MSIEDELLNLARLCHSQARLTQDRAVKQALRKLGDHYASEAKKLQGQLSAHLQQSD
Ga0307472_1003702781	3300032205	Hardwood Forest Soil	RNRGSEILMSIEDELFNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD
Ga0335071_119125621	3300032897	Soil	MSIEEELLNLARLCRSQARLSQDRAVKQALRKLGDHYESEAKKLQGQLSADLQRSD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103539

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences