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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026760 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0091540 | Ga0207630 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-B (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 25002847 |
| Sequencing Scaffolds | 34 |
| Novel Protein Genes | 39 |
| Associated Families | 39 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 8 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 7 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes | 1 |
| All Organisms → cellular organisms → Bacteria | 7 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4 | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. NRF60-BP8 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000159 | Metagenome / Metatranscriptome | 1863 | Y |
| F000173 | Metagenome / Metatranscriptome | 1777 | Y |
| F001095 | Metagenome / Metatranscriptome | 780 | Y |
| F002570 | Metagenome / Metatranscriptome | 547 | Y |
| F005545 | Metagenome / Metatranscriptome | 397 | Y |
| F007725 | Metagenome / Metatranscriptome | 346 | Y |
| F009575 | Metagenome / Metatranscriptome | 316 | Y |
| F011039 | Metagenome / Metatranscriptome | 296 | Y |
| F013221 | Metagenome / Metatranscriptome | 273 | Y |
| F014456 | Metagenome / Metatranscriptome | 263 | Y |
| F014458 | Metagenome / Metatranscriptome | 263 | Y |
| F015910 | Metagenome / Metatranscriptome | 251 | Y |
| F016552 | Metagenome / Metatranscriptome | 246 | Y |
| F017745 | Metagenome / Metatranscriptome | 239 | Y |
| F019860 | Metagenome / Metatranscriptome | 227 | Y |
| F020396 | Metagenome / Metatranscriptome | 224 | Y |
| F028254 | Metagenome / Metatranscriptome | 192 | Y |
| F028906 | Metagenome / Metatranscriptome | 190 | Y |
| F031271 | Metagenome / Metatranscriptome | 183 | Y |
| F037164 | Metagenome | 168 | Y |
| F039057 | Metagenome / Metatranscriptome | 164 | Y |
| F044111 | Metagenome / Metatranscriptome | 155 | Y |
| F052905 | Metagenome / Metatranscriptome | 142 | Y |
| F054279 | Metagenome / Metatranscriptome | 140 | Y |
| F058491 | Metagenome / Metatranscriptome | 135 | Y |
| F061158 | Metagenome / Metatranscriptome | 132 | Y |
| F067958 | Metagenome / Metatranscriptome | 125 | Y |
| F073331 | Metagenome / Metatranscriptome | 120 | Y |
| F077850 | Metagenome / Metatranscriptome | 117 | Y |
| F080568 | Metagenome / Metatranscriptome | 115 | Y |
| F081869 | Metagenome / Metatranscriptome | 114 | Y |
| F083184 | Metagenome / Metatranscriptome | 113 | Y |
| F085934 | Metagenome / Metatranscriptome | 111 | Y |
| F092651 | Metagenome | 107 | Y |
| F094364 | Metagenome / Metatranscriptome | 106 | Y |
| F094430 | Metagenome | 106 | Y |
| F095917 | Metagenome / Metatranscriptome | 105 | Y |
| F099690 | Metagenome / Metatranscriptome | 103 | Y |
| F099932 | Metagenome / Metatranscriptome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207630_100079 | Not Available | 2248 | Open in IMG/M |
| Ga0207630_100371 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1568 | Open in IMG/M |
| Ga0207630_101351 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes | 1027 | Open in IMG/M |
| Ga0207630_102110 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 877 | Open in IMG/M |
| Ga0207630_102821 | Not Available | 784 | Open in IMG/M |
| Ga0207630_103172 | All Organisms → cellular organisms → Bacteria | 749 | Open in IMG/M |
| Ga0207630_103363 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 733 | Open in IMG/M |
| Ga0207630_103511 | Not Available | 721 | Open in IMG/M |
| Ga0207630_104200 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 672 | Open in IMG/M |
| Ga0207630_104495 | Not Available | 654 | Open in IMG/M |
| Ga0207630_104656 | Not Available | 646 | Open in IMG/M |
| Ga0207630_104668 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 645 | Open in IMG/M |
| Ga0207630_104682 | All Organisms → cellular organisms → Bacteria | 645 | Open in IMG/M |
| Ga0207630_104699 | All Organisms → cellular organisms → Bacteria | 644 | Open in IMG/M |
| Ga0207630_104751 | All Organisms → cellular organisms → Bacteria | 641 | Open in IMG/M |
| Ga0207630_105374 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 611 | Open in IMG/M |
| Ga0207630_105425 | Not Available | 608 | Open in IMG/M |
| Ga0207630_105575 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 601 | Open in IMG/M |
| Ga0207630_105598 | Not Available | 600 | Open in IMG/M |
| Ga0207630_106021 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 584 | Open in IMG/M |
| Ga0207630_106139 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 580 | Open in IMG/M |
| Ga0207630_106162 | All Organisms → cellular organisms → Bacteria | 578 | Open in IMG/M |
| Ga0207630_106607 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4 | 561 | Open in IMG/M |
| Ga0207630_107022 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis | 548 | Open in IMG/M |
| Ga0207630_107055 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 547 | Open in IMG/M |
| Ga0207630_107171 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 543 | Open in IMG/M |
| Ga0207630_107355 | Not Available | 538 | Open in IMG/M |
| Ga0207630_107666 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 529 | Open in IMG/M |
| Ga0207630_107756 | All Organisms → cellular organisms → Bacteria | 526 | Open in IMG/M |
| Ga0207630_107955 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 521 | Open in IMG/M |
| Ga0207630_108005 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. NRF60-BP8 | 520 | Open in IMG/M |
| Ga0207630_108079 | All Organisms → cellular organisms → Bacteria | 518 | Open in IMG/M |
| Ga0207630_108729 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 503 | Open in IMG/M |
| Ga0207630_108805 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17 | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207630_100079 | Ga0207630_1000792 | F014456 | MARVYVVDIAGGTATATVQMQAKQTLKNLTLSWVNAAAGKIELSTSGTSQIGTAQPDNNVLARVSVSAGANTATVQIPINLPVVAFQSIYLHCTGAGNLGTAVLS |
| Ga0207630_100371 | Ga0207630_1003711 | F094364 | MSDLTLRVLRMFDQLKKETLDLHELFEAGGNDPGERTEVFHTVESLVEAGLLEERGNDFYALTAEGRRIAQTALEDDPEGN |
| Ga0207630_100868 | Ga0207630_1008682 | F080568 | LPIAATPSIRVIKSFTYRDVTRLWSNRYHFNGGTPADNAHWTTLSDAIVTAEKAAHYSVNTIVETIGYAAGSEVPVFSKTYSTAGTLAAGTDQFCPGDCAALVRYSTTARTSKNHPVYLFNYYHGVKWDTTEGVVDELAPSEKTALGTYATAWITGFSDGAITAVRAGPNGATATGSLVEDFITHRDFPR |
| Ga0207630_101351 | Ga0207630_1013512 | F005545 | MTDSGQGGAVDDRGTSQTEGRALLKKLRDTGFDSSDEKLAVALGRPVEEVEAWTGGAEPVDDDVVIKARGIAKERGLTIE |
| Ga0207630_102110 | Ga0207630_1021101 | F058491 | MRARSILLIAGLIPALAATCLAQDSGTPRPPQTEAEKAALLDLVLDNQKKSDMAMNLYERVERVEVRKNEHDPLSAEIKVSRVIPAGTGVDHIPIGPDGKPTDPAVYHTEMLKLERALSWAADDGHAQHDAYEKIAK |
| Ga0207630_102821 | Ga0207630_1028212 | F002570 | MRTKLTAMLLTFTGLMILVGQVRGVSSAAPEDKYVNRDYKGGSTFNLVSAGPNVARCGAFPQNVELSFEGSGIDTEGGYNTAVFSACTNTTTNLVFDLKATDTYVQTGDQVFIEGDPFVLAPNPGICAAANADGVPFRVTGGTGGRAGAKGHGHFHITSNLTPCNGQTPPAQVWFDGVFKVKE |
| Ga0207630_103172 | Ga0207630_1031721 | F067958 | MAKLICIHGWALLALFLFAPVIQAQGTDAARPEPGEQPAAPYLAPLPAGSTSALTLNSPLGGTTDQVQLAGNDRPLSGVQEPTLGPTFGARNFLVPSFSATSQLATSSSASGFAQPAAFTYLLGTLDLNHVTNRSELLAHYAGGGMFSSYLNSA |
| Ga0207630_103363 | Ga0207630_1033632 | F014458 | IGGLIGAELVVLAPKNWGVIQTATAAPTHPQDVLAASRIELRDASGKVRAELAMSADGGPGLFFFDSAGRNRLVMGLYSSAENEGPSLVLNDPQQQAAGIFRLFGPHDTPVIVLKSRGRDRSVYGLNPNSNDPFLANYASDGTKSDIFGHY |
| Ga0207630_103511 | Ga0207630_1035111 | F028254 | RSYVADLTSLVDAARKLPSEITPPDRVWISLRAQLVEEGIIKIPADVPQAESAPFWESISEFFRSRALATAMVAILIVAATVFQVRRDRTVPVAPPVQTAQAELPSPVQKAAVPEPSEGFDRAARALDDQEPMATGMILASTSPVDISLRDNLKKVNEFIADCQRHLKEQPQDELTREYLSAAYEQKAELLSAMIERGRSVN |
| Ga0207630_103900 | Ga0207630_1039001 | F000159 | MKLNSILRNAALVAALACTVPLLAKPVSKTINIAQSAKIGKADLQAGAYRLLIDGNKVTVQKGDRVLAETEGRWEDRATKSTNDSVLIGENGQVKEVRFSGKTRVFVF |
| Ga0207630_104200 | Ga0207630_1042001 | F094430 | MSILYELRYPSKWYSKLLTAVLALISFAVLATAAIAGFLVYRIVK |
| Ga0207630_104495 | Ga0207630_1044952 | F007725 | TIAVFTQDSPAKATAYNANLAPENQSVSGKIASVGDAAFSLSVAKKDQQEQTVEFLVDDKTRVEGKLTIGAEAMVEYRSDSGKNVAVHVVVKPSSGSHLY |
| Ga0207630_104656 | Ga0207630_1046561 | F020396 | MLDSELHDRESHDNTTGGPGAGDVNPAPAVPAAVFQPPQV |
| Ga0207630_104668 | Ga0207630_1046681 | F017745 | INDVPINYRVRFDKDHANVKATYDLSVPAGGPALIADFQATVDGTDLISGFLPGQTAFKGAKFHTLADPNKSATVSFSISSNQGWTASDDDVLRGDKVFDDAEFSN |
| Ga0207630_104682 | Ga0207630_1046822 | F085934 | TINEEEYKMLQFADSVDEAFDHIRAGLEKYHMEVDPFLQAY |
| Ga0207630_104699 | Ga0207630_1046992 | F044111 | LLTLLMLGFFVAVLRAYALHMDINCGCFATPEPINLRKVLEDAALSGLALLMTIFAFMEARQPHPWTAAEKA |
| Ga0207630_104751 | Ga0207630_1047511 | F083184 | MQGSLTPLSVLGPQAEDERRRIRQKFEAGGSAQETLSALCELADRIALQIFGEV |
| Ga0207630_104868 | Ga0207630_1048682 | F095917 | MPQLIVVEKIDGTPVSWRCSDCRQSFSVRGKLTPEERQKRITTAFKAHLEESHKSEKSAGGMAFAAGVPLPE |
| Ga0207630_105235 | Ga0207630_1052351 | F000173 | MKTFEVQFRYRDRKEESIESVVKVEASNLPGAVGKAAREFVKSLDRKQRFDMNKNGLEITAKPVATTSEAPEKTPAATAAD |
| Ga0207630_105374 | Ga0207630_1053741 | F092651 | MEPLRPGPMSVPGMTDTTEAVARARAGDADAWGELYRDF |
| Ga0207630_105425 | Ga0207630_1054252 | F031271 | MDQRRSASPKFYKNAAIVFFALGAVLIIAAVARHDWVYGAFGGITLLNGLMTTLKIISLRETKQ |
| Ga0207630_105575 | Ga0207630_1055751 | F015910 | RGSMLFSPEMDAMKARLTAIILRDSEGFFDDPKESEDLQITVRIACEFFVFLQQSNDVPELGQAEYMAGTIRSGLDWFFSMAQTGRILTGLKLQSGFGQKLPSTFSELKVSYDSVFHQVLECTHSIKAIGLLLSLVQMMFLFMTVYFPSFLSFSSESGSD |
| Ga0207630_105598 | Ga0207630_1055981 | F052905 | RASTATYKNATYGVSFRYPKTYTMLTPEKDSKQSAWPDPVAMNFSEPGGETLTTLVLPGTRASSFFKASVNKGLTAEQCSKFATTPEPSEATTNPPVDTSDDSIVPAKTNVLGVEFAEAESVTDQSEARYYHHFENGACYEFALGVEDAPGTTKPLDHLQVFDKLERIMTTVKIKSEPAPAVAASEPVAQPTPVSNPQQ |
| Ga0207630_106021 | Ga0207630_1060212 | F037164 | IVAAQLYLSNYLDSRFRPSAQIDEKAIEDFYQNKVVPRAKARGQEPPSLDAARDIIQEALVQSDINEQADRWLKESRTRLHVEKFLEDGAK |
| Ga0207630_106139 | Ga0207630_1061392 | F028906 | DARGVLMDLLAHPPFQANSPEHANLDFTHSAPLALELTQLTGAICPGDDEVYRPGLWIVLRDPHAKPKTTLPSVTQERITAIAAELAKRLGLS |
| Ga0207630_106162 | Ga0207630_1061621 | F099932 | MVGMISGLPHGLSADVANPREQSVISVRMKNWTTALLFLAAACIGGPGRQAKGQLRWDYPPRKAPIRVRLVAEAISLPRSSFFQSAEVFVAETEISHEETSLIKLVFTFLPYEPRLSESGFDYSVVHEVSAWRY |
| Ga0207630_106607 | Ga0207630_1066071 | F099690 | DAAFLLVTIHEEFGEAESKIADPALIYDCGHKNRVLLTGDQDLVYTWAKEIVEAGIAVFVTTDNNEGPKQWGPRIISAMPDMLRELSRRKKPFTARISREGCVTQVREYEDGQWKTFAIKKKNPSNFHKK |
| Ga0207630_107022 | Ga0207630_1070222 | F039057 | AALKKAGADPGIDSSRLGTVLDMANEIRAKYAHAPLVN |
| Ga0207630_107055 | Ga0207630_1070551 | F013221 | TAVVRNLGPDGSGVEFVHMKEEDREKLRKLVQRHLQI |
| Ga0207630_107171 | Ga0207630_1071711 | F001095 | MKRRRKKILDVGVEARRAARKSGIVPGATRVIADKRKRPAKHMKKWLEKEAE |
| Ga0207630_107355 | Ga0207630_1073552 | F077850 | LGIAQGGVSASIGVAQWTESMSTDALLAACDAALLRSKRQGKGRVTQASASAS |
| Ga0207630_107666 | Ga0207630_1076661 | F019860 | MSGKNFRDVPADQRTNAEGKQVLNRILLATPDAEYELMRADLAHIDLPSHLSLHEPTQNIEFV |
| Ga0207630_107756 | Ga0207630_1077561 | F061158 | ADGEKIAERGGNWLTRSFGAGYPDLDSVIEKLEKHRK |
| Ga0207630_107955 | Ga0207630_1079551 | F081869 | VLQQESDQYVFVRRDGTLFFAVAYAWENGTLRYITGEGIRRTVSTDKLDLDATQQFNEQRGLNFRLPA |
| Ga0207630_107955 | Ga0207630_1079552 | F011039 | HLDQCERLLAAIQEKAAKEFNIDHTTVQLERAGLPARSGYVMPEPVKK |
| Ga0207630_108005 | Ga0207630_1080051 | F016552 | QGTRKDDIVFNSRGIPLAGATVRVCAMPASGQPCTPLALIYSDVGLTQALSNPTSTDGLGNYSFYAAPGKYEIEISGPGIATKQLPNVVLPNDPASPTFSGAVSAFSLSLGGNLTVSGNTTVIGSLASGTLTLNNQGMSPGAPGAGSVNLYTKTADKRLYYQDETGTEIGPL |
| Ga0207630_108079 | Ga0207630_1080791 | F054279 | FGLIAGIQGDRDFWSAAAFGIIPLAVGIGYFLDFTLIRRDLRASS |
| Ga0207630_108729 | Ga0207630_1087291 | F073331 | SADKAQYWELYTTFYRNLIEMPADHLPHTFVEAFAATYREALKKKPEP |
| Ga0207630_108805 | Ga0207630_1088051 | F009575 | MYKYNMPDETAIKMYESARDKLRELLRQETEIKEQISHWGPIVEQLARLVGETVDPEIASRINQLHQESQAAAGQEMGLTEAIRWVFRQPLLLPLTPTQVRDRMAEMGYDLGKYKHVMPPIHNTLKRMKE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |