Metagenome / Metatranscriptome Family F094364

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F094364
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	75 residues
Representative Sequence	MDELKKRVLGMFEQMGKDALDLHELFEAGGNDMDARREVFYVVESLVEEGLLEERGNDFYALTAEGKRAAQANVAGA
Number of Associated Samples	72
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	62.26 %
% of genes near scaffold ends (potentially truncated)	22.64 %
% of genes from short scaffolds (< 2000 bps)	69.81 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.82

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (97.170 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.151 % of family members)
Environment Ontology (ENVO)	Unclassified (24.528 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.057 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.67% β-sheet: 11.43% Coil/Unstructured: 41.90%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.82
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.82
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.4.5.0: automated matches	d4g9ya_	4g9y	0.78891
a.4.5.48: F93-like	d2co5a1	2co5	0.78762
a.4.5.0: automated matches	d6pcoa_	6pco	0.78661
a.4.5.0: automated matches	d3l7wa_	3l7w	0.78194
a.4.5.56: Rio2 serine protein kinase N-terminal domain	d1tqia1	1tqi	0.77892

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF04238	DUF420	41.51
PF12680	SnoaL_2	16.04
PF13463	HTH_27	3.77
PF13646	HEAT_2	3.77
PF12838	Fer4_7	3.77
PF00510	COX3	2.83
PF03626	COX4_pro	1.89
PF00355	Rieske	0.94
PF00814	TsaD	0.94
PF00246	Peptidase_M14	0.94
PF00034	Cytochrom_C	0.94
PF00171	Aldedh	0.94
PF00149	Metallophos	0.94
PF05193	Peptidase_M16_C	0.94
PF00582	Usp	0.94
PF13088	BNR_2	0.94
PF01451	LMWPc	0.94
PF00664	ABC_membrane	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2322	Cytochrome oxidase assembly protein CtaM/YozB, DUF420 family	Posttranslational modification, protein turnover, chaperones [O]	41.51
COG1845	Heme/copper-type cytochrome/quinol oxidase, subunit 3	Energy production and conversion [C]	2.83
COG3125	Heme/copper-type cytochrome/quinol oxidase, subunit 4	Energy production and conversion [C]	1.89
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.94
COG0533	tRNA A37 threonylcarbamoyltransferase TsaD	Translation, ribosomal structure and biogenesis [J]	0.94
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.94
COG1214	tRNA A37 threonylcarbamoyladenosine modification protein TsaB	Translation, ribosomal structure and biogenesis [J]	0.94
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.11 %
Unclassified	root	N/A	1.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.17 %
Unclassified	root	N/A	1.89 %
Viruses	superkingdom	All Organisms → Viruses	0.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.17 %
Unclassified	root	N/A	1.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	57.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	1.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	17.92 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	11.32 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	1.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.98 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	9.43 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	1.89 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.98 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	9.43 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	1.89 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.98 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	8.49 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	1.89 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	0.94 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.98 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	8.49 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	1.89 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.94 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002896\|JGI24802J43972_1002345	All Organisms → cellular organisms → Bacteria → Proteobacteria	1231	Open in IMG/M
3300002915\|JGI25387J43893_1001009	All Organisms → cellular organisms → Bacteria	3138	Open in IMG/M
3300003321\|soilH1_10083918	All Organisms → Viruses → Predicted Viral	1572	Open in IMG/M
3300004479\|Ga0062595_100094740	All Organisms → cellular organisms → Bacteria	1564	Open in IMG/M
3300005167\|Ga0066672_10914673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300005171\|Ga0066677_10457442	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300005175\|Ga0066673_10573638	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300005179\|Ga0066684_10069935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2074	Open in IMG/M
3300005184\|Ga0066671_10170558	All Organisms → cellular organisms → Bacteria	1286	Open in IMG/M
3300005184\|Ga0066671_10374561	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	907	Open in IMG/M
3300005184\|Ga0066671_10813478	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300005566\|Ga0066693_10151958	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300005575\|Ga0066702_10086007	All Organisms → cellular organisms → Bacteria	1769	Open in IMG/M
3300005985\|Ga0081539_10013448	All Organisms → cellular organisms → Bacteria	6164	Open in IMG/M
3300006169\|Ga0082029_1406363	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300006169\|Ga0082029_1697745	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300006800\|Ga0066660_10064741	All Organisms → cellular organisms → Bacteria	2452	Open in IMG/M
3300006894\|Ga0079215_11160559	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300007790\|Ga0105679_10239477	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300007790\|Ga0105679_10793878	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300009147\|Ga0114129_10150962	All Organisms → cellular organisms → Bacteria → Acidobacteria	3180	Open in IMG/M
3300009789\|Ga0126307_10703548	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	815	Open in IMG/M
3300009840\|Ga0126313_10813616	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	760	Open in IMG/M
3300010039\|Ga0126309_10753105	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300010044\|Ga0126310_10651019	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	792	Open in IMG/M
3300010045\|Ga0126311_10005437	All Organisms → cellular organisms → Bacteria	6765	Open in IMG/M
3300010045\|Ga0126311_10642093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	844	Open in IMG/M
3300010045\|Ga0126311_10689666	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	816	Open in IMG/M
3300010166\|Ga0126306_10130162	All Organisms → cellular organisms → Bacteria → Acidobacteria	1852	Open in IMG/M
3300010166\|Ga0126306_10328657	All Organisms → cellular organisms → Bacteria	1183	Open in IMG/M
3300012187\|Ga0136622_10508656	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300012210\|Ga0137378_11808974	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	514	Open in IMG/M
3300012212\|Ga0150985_110822566	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	940	Open in IMG/M
3300012212\|Ga0150985_117624256	All Organisms → cellular organisms → Bacteria → Acidobacteria	1140	Open in IMG/M
3300012469\|Ga0150984_103468479	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300012469\|Ga0150984_107986628	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300012684\|Ga0136614_10241070	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300012917\|Ga0137395_10052129	All Organisms → cellular organisms → Bacteria → Acidobacteria	2577	Open in IMG/M
3300014487\|Ga0182000_10000005	All Organisms → cellular organisms → Bacteria	136314	Open in IMG/M
3300014487\|Ga0182000_10081466	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300014487\|Ga0182000_10218291	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300014488\|Ga0182001_10000188	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	13836	Open in IMG/M
3300014488\|Ga0182001_10001796	All Organisms → cellular organisms → Bacteria → Acidobacteria	4221	Open in IMG/M
3300014488\|Ga0182001_10059887	Not Available	1058	Open in IMG/M
3300014488\|Ga0182001_10282370	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300015161\|Ga0167623_1000002	All Organisms → cellular organisms → Bacteria → Acidobacteria	561744	Open in IMG/M
3300018432\|Ga0190275_11447323	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	764	Open in IMG/M
3300018465\|Ga0190269_10008939	All Organisms → cellular organisms → Bacteria	4505	Open in IMG/M
3300018466\|Ga0190268_10376093	All Organisms → cellular organisms → Bacteria → Proteobacteria	900	Open in IMG/M
3300018466\|Ga0190268_10508171	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300018468\|Ga0066662_10001041	All Organisms → cellular organisms → Bacteria → Acidobacteria	12491	Open in IMG/M
3300018468\|Ga0066662_10010725	All Organisms → cellular organisms → Bacteria → Acidobacteria	4758	Open in IMG/M
3300018468\|Ga0066662_10751191	All Organisms → cellular organisms → Bacteria → Acidobacteria	939	Open in IMG/M
3300018468\|Ga0066662_12640678	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300018468\|Ga0066662_12717319	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300018482\|Ga0066669_10928858	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300018920\|Ga0190273_10492418	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	894	Open in IMG/M
3300018920\|Ga0190273_10902602	Not Available	716	Open in IMG/M
3300018920\|Ga0190273_10967443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300018946\|Ga0193599_1000187	All Organisms → cellular organisms → Bacteria → Acidobacteria	24972	Open in IMG/M
3300019767\|Ga0190267_10084408	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300019767\|Ga0190267_10399947	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300019767\|Ga0190267_10753030	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300019767\|Ga0190267_11359108	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	535	Open in IMG/M
3300019767\|Ga0190267_11453045	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300019879\|Ga0193723_1102930	All Organisms → cellular organisms → Bacteria → Acidobacteria	805	Open in IMG/M
3300019885\|Ga0193747_1000004	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	365558	Open in IMG/M
3300019885\|Ga0193747_1033322	All Organisms → cellular organisms → Bacteria → Acidobacteria	1280	Open in IMG/M
3300020146\|Ga0196977_1000106	All Organisms → cellular organisms → Bacteria → Acidobacteria	53208	Open in IMG/M
3300020146\|Ga0196977_1013305	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2002	Open in IMG/M
3300020215\|Ga0196963_10040067	All Organisms → cellular organisms → Bacteria	1964	Open in IMG/M
3300020215\|Ga0196963_10083304	All Organisms → cellular organisms → Bacteria → Acidobacteria	1339	Open in IMG/M
3300020215\|Ga0196963_10109610	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1164	Open in IMG/M
3300020215\|Ga0196963_10231711	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300020215\|Ga0196963_10246162	All Organisms → cellular organisms → Bacteria → Acidobacteria	780	Open in IMG/M
3300021067\|Ga0196978_1001963	All Organisms → cellular organisms → Bacteria	8169	Open in IMG/M
3300021184\|Ga0196959_10003900	All Organisms → cellular organisms → Bacteria	2138	Open in IMG/M
3300021362\|Ga0213882_10009391	All Organisms → cellular organisms → Bacteria	3512	Open in IMG/M
3300021374\|Ga0213881_10360906	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300026300\|Ga0209027_1006361	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	4440	Open in IMG/M
3300026550\|Ga0209474_10620702	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300026760\|Ga0207630_100371	All Organisms → cellular organisms → Bacteria → Acidobacteria	1568	Open in IMG/M
3300027119\|Ga0209522_1004962	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1277	Open in IMG/M
3300027530\|Ga0209216_1102527	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300027645\|Ga0209117_1153862	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	600	Open in IMG/M
3300028578\|Ga0272482_10000870	All Organisms → cellular organisms → Bacteria	9133	Open in IMG/M
3300029695\|Ga0206087_1002505	All Organisms → cellular organisms → Bacteria	1457	Open in IMG/M
3300030510\|Ga0268243_1000002	All Organisms → cellular organisms → Bacteria	207356	Open in IMG/M
3300030513\|Ga0268242_1000492	All Organisms → cellular organisms → Bacteria → Acidobacteria	6810	Open in IMG/M
3300030513\|Ga0268242_1002457	All Organisms → cellular organisms → Bacteria	2744	Open in IMG/M
3300031548\|Ga0307408_101379501	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	663	Open in IMG/M
3300032005\|Ga0307411_11348366	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300032126\|Ga0307415_100774392	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300034001\|Ga0334919_000083	All Organisms → cellular organisms → Bacteria → Acidobacteria	74462	Open in IMG/M
3300034007\|Ga0334936_002449	All Organisms → cellular organisms → Bacteria → Acidobacteria	5668	Open in IMG/M
3300034009\|Ga0334944_004405	All Organisms → cellular organisms → Bacteria	2744	Open in IMG/M
3300034026\|Ga0334946_000007	All Organisms → cellular organisms → Bacteria	442366	Open in IMG/M
3300034026\|Ga0334946_009502	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1537	Open in IMG/M
3300034026\|Ga0334946_075061	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	568	Open in IMG/M
3300034028\|Ga0334950_020837	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1450	Open in IMG/M
3300034030\|Ga0334952_000204	All Organisms → cellular organisms → Bacteria → Acidobacteria	38054	Open in IMG/M
3300034135\|Ga0334929_084634	All Organisms → cellular organisms → Bacteria → Acidobacteria	653	Open in IMG/M
3300034172\|Ga0334913_002074	All Organisms → cellular organisms → Bacteria	6825	Open in IMG/M
3300034221\|Ga0334937_102712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	791	Open in IMG/M
3300034377\|Ga0334931_103902	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	665	Open in IMG/M
3300034402\|Ga0334960_017801	All Organisms → cellular organisms → Bacteria → Acidobacteria	931	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.51%
Host-Associated	Host-Associated	8.49%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.62%
Plants	Host-Associated → Plants	8.49%
Aquatic	Environmental → Aquatic	1.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.66%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.83%
Freshwater	Environmental → Aquatic → Freshwater	1.89%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.04%
Sand	Environmental → Terrestrial → Soil → Sand	11.32%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	5.66%
Loam	Environmental → Terrestrial → Soil → Loam	4.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.77%
Ice	Environmental → Aquatic → Freshwater → Ice	1.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.04%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	11.32%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	7.55%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	5.66%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.83%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.89%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.38%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	10.38%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	8.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.49%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.55%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	6.60%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.83%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.89%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.89%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	1.89%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	1.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.89%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002896	Soil microbial communities from Manhattan, Kansas, USA - Sample 300um Nextera	Environmental	Open in IMG/M
3300002915	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012187	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ448 (21.06)	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300015161	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1B, Ice margin)	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300018946	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, 0 min after wetting v1	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300020146	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C	Environmental	Open in IMG/M
3300020215	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5	Environmental	Open in IMG/M
3300021067	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13C	Environmental	Open in IMG/M
3300021184	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026760	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-B (SPAdes)	Environmental	Open in IMG/M
3300027119	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027530	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300028578	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0	Environmental	Open in IMG/M
3300029695	Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030513	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300034001	Biocrust microbial communities from Mojave Desert, California, United States - 15HMC	Environmental	Open in IMG/M
3300034007	Biocrust microbial communities from Mojave Desert, California, United States - 32SMC	Environmental	Open in IMG/M
3300034009	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 40SMS	Environmental	Open in IMG/M
3300034026	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS	Environmental	Open in IMG/M
3300034028	Biocrust microbial communities from Mojave Desert, California, United States - 46SNC	Environmental	Open in IMG/M
3300034030	Biocrust microbial communities from Mojave Desert, California, United States - 48SNC	Environmental	Open in IMG/M
3300034135	Biocrust microbial communities from Mojave Desert, California, United States - 25HNC	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034221	Biocrust microbial communities from Mojave Desert, California, United States - 33SMC	Environmental	Open in IMG/M
3300034377	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS	Environmental	Open in IMG/M
3300034402	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 56SNS	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24802J43972_10023452	3300002896	Soil	MFDELGKSELDLHELFEAGGNDPEARRAVLNAVEWLVGRGLLVERGNDFYAPTDAGREAAGVWRERQTRGD*
JGI25387J43893_10010093	3300002915	Grasslands Soil	MSEMRERVLAMFNEWGKEALDLHELFEAGGNDPRARTEVFDTVEQLVKEGLLEERGNDFYALTTKGKRLIK*
soilH1_100839182	3300003321	Sugarcane Root And Bulk Soil	MFEELGRDALDLHELFEAGGNDPEARREVFYAIENLVERGLLEERGNDFYALTELGRETARASKAEGDSLSHE*
Ga0062595_1000947403	3300004479	Soil	MSDLTLRVLRMFDQLKKETLDLHELFEAGGNDPGERTEVFHTVESLVEAGLLEERGNDFYALTAEGRRIAQTALEDDPEGN*
Ga0066672_109146731	3300005167	Soil	MDELRQRVLGMFEQMKKETLDLHELFEAGGNDAEARKEVFYIVERLVEEGLLEERGNDFYALTVEGKRAARGNHQVRET*
Ga0066677_104574421	3300005171	Soil	ELDLHELFEAGGNDPDARRAVLYAVENLVERGLLEERGNDFYALTDAGRAEAVKRREGPQRGG*
Ga0066673_105736382	3300005175	Soil	RVLGMFEQMKKETLDLHELFEAGGNDAEARKEVFYIVERLVEEGLLEERGNDFYALTAEGKRAARGNHQVRET*
Ga0066684_100699353	3300005179	Soil	MDELRQRVLGMFEQMKKETLDLHELFEAGGNDAEARKEVFYIVERLVEEGLLEERGNDFYALTVEGKRAARGNRQVRET*
Ga0066671_101705582	3300005184	Soil	MFEEVGREALDLHELFEAGGNDPEARREVFYAVEGLVERGLLEERGNDFYALTPKGREAAASESNEEGESV*
Ga0066671_103745611	3300005184	Soil	MSSMRERVLAMFNEWGKEALDLHELFEAGGNDPRARTEVFDTVEQLVKEGLLEERGNDFYALTTEGKRLQKQ*
Ga0066671_108134781	3300005184	Soil	MDELRQRVLGMFEQMKKETLDLHELFEAGGNDAEARKEVFYIIERLVEEGLLEERGNDFYALTAEGKRAARGNHQVRET*
Ga0066693_101519581	3300005566	Soil	RVLGMFEQMKKETLDLHELFEAGGNDAEARKEVFYIIERLVEEGLLEERGNDFYALTAEGKRAARGNHQVRET*
Ga0066702_100860073	3300005575	Soil	MTPRVLRMFDEMGKRELDLHELFEAGGNDPDARRAVLYAVENLVERGLLEERGNDFYALTEAGRAEARKRREG*
Ga0081539_100134486	3300005985	Tabebuia Heterophylla Rhizosphere	MFEEIGKDSLDLHELFEAGGNDPEARREVFYTIESLVERGLLEERGNDFYSLTETGRAAARVETDETRRDS*
Ga0082029_14063632	3300006169	Termite Nest	MDEIKRRVLGMFEQLGKEVLDLHELFEAGGNDADARREVFYAVEGLVEAGLIEERGNDFYALTAEGKRAAHAAKPGA*
Ga0082029_16977451	3300006169	Termite Nest	MDETKRRVLAMFEQMGKDVLDLHELFEAGGNDADARRDVFYVVEGLVEQGLLEERGNDFYALTAEGKRAAQAAKPGA*
Ga0066660_100647414	3300006800	Soil	MDELRQRVLGMFEQMKKETLDLHELFEAGGNDAEARKEVFYIIERLVEEGLLEERGNDFYALTLEGKRAAQGNHQVRET*
Ga0079215_111605592	3300006894	Agricultural Soil	LGMFEELGKPELDLHELFEAGGNEADARREVFYAVEWLVERGLLEERGNDFYALTDAGREAAGGRGTGPRGV*
Ga0105679_102394772	3300007790	Soil	LGEVTERVLRMFDEMGKEALDLHELFEAGGNDPDERRAVFYAVERLVEQGLLEERGNDFYAPTEEGRRAAREDL*
Ga0105679_107938782	3300007790	Soil	MFAHFNKEELDLHELFEAGGNDPDARREVFYTVERLVERGLLEERGNDFYSLTEEGRRVARGGEGRPAG*
Ga0114129_101509624	3300009147	Populus Rhizosphere	MFQTLGKNRLDLHELFEAGGNDPDARTAVFDCVEQLVEEGLLEELGNDFYSLTEKGRQAARIGESANG*
Ga0126307_107035481	3300009789	Serpentine Soil	MEEIKKRVLGMFEQMGKETLDLHELFEAGGNDADARRDVIFAVEGLVEEGLLEERGNDFYALTAEGKRAAQANVAGA*
Ga0126313_108136162	3300009840	Serpentine Soil	LDELTRRVLGMFEEMGRDALDLHELFEAGGNDPDARREVFYRVESLVERGLLEERGNDFYALTRAGREAAAASAGEEGKSV*
Ga0126309_107531051	3300010039	Serpentine Soil	MEEIKKRVLGMFEQMGKDALDLHELFEAGGNDADARRDVFFAVEGLVEEGLLEERGNDFYALTAEGKRAAAVEPGA*
Ga0126310_106510192	3300010044	Serpentine Soil	LDELTRRVLGMFEEVGREALDLHELFEAGGNDPEARREVFYRVEGLVERGLLEERGNDFYALTGAGREAAAASAAGEEGKGL*
Ga0126311_100054378	3300010045	Serpentine Soil	LDELTRRVLGMFEEVGREALDLHELFEAGGNDPEARREVFYAVERLVERGLLEERGNDFYALTGAGREAASAAGEEGESL*
Ga0126311_106420932	3300010045	Serpentine Soil	MAEMKQRVLCMFEQLGKETLDLHELFEAGGNDMDARKEVFYTVERLVEDGLLEERGNDFYALTAEGKKAARAFTNNRETQD*
Ga0126311_106896662	3300010045	Serpentine Soil	MDEIKRRVLGMFEQMGKEALDLHELFEAGGNDADTRREVLYAVEGLVEVGLLEERGADFYALTAEGKRAALEAKPGA*
Ga0126306_101301623	3300010166	Serpentine Soil	LDELTRRVLGMFEEVGRETLDLHELFEAGGNDPDARREVFYRVEGLVERGLLEERGNDFYALTEAGRVAAAASATGEEGKSL*
Ga0126306_103286572	3300010166	Serpentine Soil	LTESEELTLRVLRMFDVMGKEALDLHELFEAGGNDPDARLAVFDIVERLAREGALEERGNDFYALTDAGRARAARPGAGEE*
Ga0136622_105086562	3300012187	Polar Desert Sand	VLGMFKQIGKETLDLHELFEAGGNDMEARKEVFFTVERLVEEGLMEERGNDFYALTAEGKRAAQVLTDDQKD*
Ga0137378_118089741	3300012210	Vadose Zone Soil	MFEQLRKEALDLHQLFEAGGNDPDERREVLEIVELLGKDGLLAERGNDFYSLTDEGERAAKQIRIPRLSKL
Ga0150985_1108225663	3300012212	Avena Fatua Rhizosphere	MNEIKERVLLMFRQLKKETLDLHELFEAGGNDPEERREVFDAVEQLVAEGLLEERGNDFYALTAEGKGA
Ga0150985_1176242563	3300012212	Avena Fatua Rhizosphere	MFGQMKKEALDLHELFEAGGNDPEERREVFDAVEQLVAEGLLEERGNDFYALTAGGQRAAESLKQNRREH*
Ga0150984_1034684791	3300012469	Avena Fatua Rhizosphere	MKEMKEQVLSMFGQMKKETLDLHELFEAGGNDPEERREVFDAVEQLVAEGLLEERGNDFYALTAGGQRAAESLKQNRREH*
Ga0150984_1079866282	3300012469	Avena Fatua Rhizosphere	MKEIKERVLLMFGQMKKETLDLHELFEAGGNDPDERREVFDAVERLVAEGLLEERGNDFYALTAESQRAAESFQQNRKEN*
Ga0136614_102410703	3300012684	Polar Desert Sand	MKQRVLKMFEQLGKETLDLHELFEAGGNDMDARKQVFFTVESLVEEGLLEERGNDFYALTAEGKKAAGRQF*
Ga0137395_100521291	3300012917	Vadose Zone Soil	MDELRQRVLGMFEQMKKETLDLHELFEAGGNDAEARKEVLYTVERLVEEGLLEERGNDFYALTAEGKRAARGNHQVRET*
Ga0182000_1000000562	3300014487	Soil	MKEDVLAMFEQMKKETLDLHELFEAGGNDADRRREVFYAVEQLVEEGLLEERGNDFYALTAEGKRAAQGLVKES*
Ga0182000_100814663	3300014487	Soil	MDELKKRVLGMFEQMGKDALDLHELFEAGGNDMDARREVFYVVESLVEEGLLEERGNDFYALTAEGKRAAQANVAGA*
Ga0182000_102182911	3300014487	Soil	MEDLRQRVLGMFEQMKKETLDLHELFEAGGNDMDARKEVFYTVERLVEEGLLEERGNDFYALTAEGKRAARENVKSAKEN*
Ga0182001_100001882	3300014488	Soil	MKEMKERVLFMFEQMKKDVLDLHELFEAGGNDPDERLEVFYAVEQLVADGLLEERGNDFYALTAEGKRAAENLGRKEN*
Ga0182001_100017963	3300014488	Soil	MFEQLGKETLDLHELFEAGGNDMDARKEVFYTVERLVEEGLLEERGNDFYALTAEGKRAARAFTDELKDQD*
Ga0182001_100598872	3300014488	Soil	MDALTQKVLGMFEHWGKETLDLHELFEAGGNDAEARIAVFDTVERLVREGLMEERGNDFYALTEEGKRTAQRNPVQRDET*
Ga0182001_102823702	3300014488	Soil	GKSELDLHELFEAGGNDPDARREVFYAVERLVEEGLLEERGNDFYAPTDAGRAAVRGRSGGEARGD*
Ga0167623_1000002296	3300015161	Glacier Forefield Soil	MDEMKRRVLDMFEQMKKETLDLHELFEAGGNDFEARKDVLFTVEQLVEEGLLEERGNDFYALTAEGKRAARQ*
Ga0190275_114473232	3300018432	Soil	VMAELRERVLGMFEQMGKETLDLHELFEAGGNDMDERKEVFYTVERLVEEGLMEERGNDFYALTAKGKSAAGSITSG
Ga0190269_100089396	3300018465	Soil	LGELSSRVLRMFEEMGKDALDLHELFEAGGNDPDERRAVFFAVEELVAAGLLEERGNDFYALTPEGRRAAGRGA
Ga0190268_103760932	3300018466	Soil	VLAMFDELGKSELDLHELFEAGGNDPDARLQVFHAVEWLVESGLLEERGNDFYALSDAGREAVRTGREGQGRGD
Ga0190268_105081712	3300018466	Soil	VLSMFGELGKAELDLHELFEAGGNDPDARREVFFAVERLVEEGLLEERGNDFYALTDAGRASAGGGPVE
Ga0066662_1000104113	3300018468	Grasslands Soil	MFERMGKGMLDLHELFEAGGNDPDERREVFYAVELMVGEGLLEEQGQDFYALTEKGKAAARDLKS
Ga0066662_100107252	3300018468	Grasslands Soil	MTPRVLRMFDEMGKRELDLHELFEAGGNDPDARRAVLYAVENLVERGLLEERGNDFYALTEAGRAEARKRREG
Ga0066662_107511911	3300018468	Grasslands Soil	MRTTEETASRVLGMFDEIGKDVLDLHELFEAGGNDPDARRAVFFAVENLVERGLLEERGNDFYSLTDAG
Ga0066662_126406782	3300018468	Grasslands Soil	MEEFRERVLGMFERMKKDALDLHELFEAGGNDPEERLEVFYVVEGLVEEGLLEERGQDFYALTEEGKVAARDLKSKES
Ga0066662_127173191	3300018468	Grasslands Soil	MSATDETASRVLGMFQEMGKDALDLHELFEAGGNDPDARRAVFFAVENLVERGLLEERGNDFYSLTDAG
Ga0066669_109288581	3300018482	Grasslands Soil	SMFERMKKDTLDLHELFEAGGNDPRERREVFYAVERLVEEGLLEERGQDFYALTEEGKRAARDLKSKES
Ga0190273_104924182	3300018920	Soil	MDTLTQKVLGMFEYWGKETLDLHELFEAGGNDMEARTAVFDIVEGLVREGLMEERGNDFYALTEEGKKRARTININAIENEDG
Ga0190273_109026022	3300018920	Soil	MFDLMGKEALDLHELFEAGGNDSDARLAVFDIVERLVREGALEERGNDFYALTEEGRARAAHTGAGEE
Ga0190273_109674431	3300018920	Soil	MGALTQKVLGMFEHWRKETLDLHELFEAGGNDAEARIAVFDTVERLVREGLLEERSNDFYALTEEGTRATEDENKVDESVDEKQ
Ga0193599_100018716	3300018946	Soil	MFGEMGKETLDLHELFEAGGNDPDERLAVFYAVEELVAAGLLEERGNDFYALTDEGRRAAAGGV
Ga0190267_100844082	3300019767	Soil	MDEMKRLVLGMFKQIGKETLDLHELFEAGGNDAEARKEVFFTVERLVEEGLMEERGNDFYALTAEGERAAQSFGDEQTPEDHGSIR
Ga0190267_103999472	3300019767	Soil	VDELSQSVLRMFGEMGKEALDLHELFEAGGNDPDARREVFFAVERMVAEGLLEERGNDFYALTEEGRRRAGGEV
Ga0190267_107530302	3300019767	Soil	MDEMKRRVLGMFEQLGKETLDLHELFEAGGNDMDARKEVFFAVEQLVEEGLLEERGNDFYALTAKGKSAAGASK
Ga0190267_113591082	3300019767	Soil	VSDELTRRVLGMFEEMGRDALDLHELFEAGGNDPEARREVFYRVEGLVERGLLEERGNDFYALTRAGREAAAASAGEEGK
Ga0190267_114530451	3300019767	Soil	IGKETLDLHELFEAGGNDMEARKEVFYTVERLVEEGLLEERGNDFYALTPEGKRAAPVSADDHKGS
Ga0193723_11029301	3300019879	Soil	MEVLAQKVLGMFGYLNKDVLDLHELFEAGGNDPDARSAVVDTVERLVEEGLFEERGNDFYALTAKGKESLN
Ga0193747_1000004219	3300019885	Soil	MSSIRECVLAMFTELGKEELDLHELFEAGGNDPEARTEVFDTVERLVKEGVLEERGNDFYALTNEGKQLLRNQNSPAEQ
Ga0193747_10333221	3300019885	Soil	MEVLAQKVLGMFGYLNKDVLDLHELFEAGGNDPDARSAVVDTVERLVGEGLFEERGNDFYALTAKGKESLN
Ga0196977_100010621	3300020146	Soil	MDDLSRRVLGMFEEMGKETLDLHELFEAGGNDPDERRAVFYAVERLVERGLLEERGNDFYAPTAEGRKVSKGGG
Ga0196977_10133052	3300020146	Soil	MDEMKRRVLAMFEQMGKDVLDLHELFEAGGNDADARREVFFAVEGLVAEGFLEERGNDFYALTAEGKRAAQADAAGA
Ga0196963_100400673	3300020215	Soil	MLDEVSRRVLGMFDEWGKESLDLHELFEAGGSDPDARREVFYAVERMVEQGLLEERGNDFYAPTERGRRALGER
Ga0196963_100833043	3300020215	Soil	VSGEEDLSRRVLGLFNEFGKETLDLHELFEAGGSNDPDARREVFYTVERLVEEGLLEERGNDFYALTDAGRRAASDATRGGA
Ga0196963_101096101	3300020215	Soil	MDDLSRRVLGMFEEMGKESLDLHELFEAGGNDPDERRAVFYAVERLVESGLLEERGNDFYAPTAEGRRALKGGAE
Ga0196963_102317112	3300020215	Soil	MTADDFELRVLTMFREMGKETLDLHELFEAGGNDPDARREVFYAVERLAQAGLLEERGNDFYALTDRGRARLGG
Ga0196963_102461622	3300020215	Soil	LGEVALRVLRMFGEMGKQTLDLHELFEAGGNDPDERRAVFHAVEDLVASGLLEERGNDFYALTDEGRRAAAGGV
Ga0196978_100196310	3300021067	Soil	MFEQMGKDVLDLHELFEAGGNDADARREVFFAVEGLVAEGFLEERGNDFYALTAEGKRAAQADAAGA
Ga0196959_100039004	3300021184	Soil	PFREHSNSEGSLMDEMKRRVLGMFEQMGKDVLDLHELFEAGGNDADARREVFYAVEGLVEEGFLEERGNDFYALTAEGKRAAQAGVAGA
Ga0213882_100093914	3300021362	Exposed Rock	MDLMAQNVLGMFERFGKETLDLHELFEAGGNDPEARTAVFDTVERLIKEGLLEERGNDFYALTESGKLAARDKIQPSETE
Ga0213881_103609062	3300021374	Exposed Rock	MEELRPRVLKIFGQMGKEALDLHELFEAGGNDPEERREVFYAVEQLVEDGLLEERGNDFYALTAEGKRAAQSTSSTKAKES
Ga0209027_10063615	3300026300	Grasslands Soil	MSEMRERVLAMFNEWGKEALDLHELFEAGGNDPRARTEVFDTVEQLVKEGLLEERGNDFYALTTKGKRLIK
Ga0209474_106207022	3300026550	Soil	MDELRQRVLGMFEQMKKETLDLHELFEAGGNDAEARKEVFYIVERLVEEGLLEERGNDFYALTVEGKRAARGNHQVRET
Ga0207630_1003711	3300026760	Soil	MSDLTLRVLRMFDQLKKETLDLHELFEAGGNDPGERTEVFHTVESLVEAGLLEERGNDFYALTAEGRRIAQTALEDDPEGN
Ga0209522_10049625	3300027119	Forest Soil	LDELTRRVLAMFGELGRDALDLHELFEAGGNDPEARREVFYRVESLVERGLLEERGNDFYALT
Ga0209216_11025271	3300027530	Forest Soil	LDELTRRLLGMFEEMGRDALDLHELFEAGGNDPEARREVFYRVESLVERGLLEERGNDFYALTSAGREAAASAAGEEGKGV
Ga0209117_11538621	3300027645	Forest Soil	MFEQLGKEALDLHQLFEAGGNDPDERQKVLEIVELLVQEGLLAERGNDFYSLTDDGEAAAQQITSPGLAKLI
Ga0272482_100008704	3300028578	Soil	MDSLSLRILGMFAELGRESLDLHELFEAGGNDPDERRAVFYAVERLVEQGLLEERGNDFYAPTEEGRRASGLGAGGAAEL
Ga0206087_10025053	3300029695	Soil	VILMDEMKRRVLAMFEQMGKDVLDLHELFEAGGNDADARREVFFAVEGLVAEGFLEERGNDFYALTAEGKRAAQADAAGA
Ga0268243_100000269	3300030510	Soil	MFEQMKKETLDLHELFEAGGNDADRRREVFYAVEQLVEEGLLEERGNDFYALTAEGKRAAQGLVKES
Ga0268242_100049210	3300030513	Soil	MFEQMKKDVLDLHELFEAGGNDPDERLEVFYAVEQLVADGLLEERGNDFYALTAEGKRAAENLGRKEN
Ga0268242_10024576	3300030513	Soil	MFEQLGKETLDLHELFEAGGNDMDARKEVFYTVERLVEEGLLEERGNDFYALTAEGKRAARAFTDELKDQD
Ga0307408_1013795012	3300031548	Rhizosphere	VLAMFDELGKSELDLHELFEAGGNDPDARLQVFHAVEWLVERGLLEERGNDFYALSDAGREAVRSGREGQ
Ga0307411_113483661	3300032005	Rhizosphere	DEIKKRVLAMFELLGKDALDLHELFEAGGNDADARREVFFAVEGLVEEGLLEERGNDFYALTAEGKRAALGG
Ga0307415_1007743922	3300032126	Rhizosphere	MDEIKRRVLGMFEQMGKESLDLHELFEAGGNDADARREVLYAVEGLVGEGLLEERGNDFYALTAEGKRAALGG
Ga0334919_000083_17849_18079	3300034001	Hypolithic Biocrust	MSLKVLGMFERWNKEALDLHELFEAGGNDPEERKAVFFTVERLVEQGLLEERGNDFYALTAEGKRVALENIGSEED
Ga0334936_002449_4546_4776	3300034007	Biocrust	MADMMLRVLRMFDHWQKETLDLHELFEAGGNDPEARTEVFHTVENLVEAGLLEERGNDFYALTAEGRKLAATAAGD
Ga0334944_004405_329_547	3300034009	Sub-Biocrust Soil	MFDELGKPELDLHELFEAGGNDPDARREVIFAVERLVEDGLLEERGADFYALTAAGRAAAAGGRQGDSRRGA
Ga0334946_000007_37924_38172	3300034026	Sub-Biocrust Soil	MSEMTLSVLRMFDQLKKETLDLHELFEAGGNDPEARTEVFHTVENLVEAGLLEERGNDFYSLTEEGRKAALGGGGELQQEGN
Ga0334946_009502_164_382	3300034026	Sub-Biocrust Soil	MFDEMGRESLDLHELFEAGGNDPDARREVFYTVEGLVERGLLEERGNDFYALTEEGRRAGQGTAAGPPDEKG
Ga0334946_075061_337_564	3300034026	Sub-Biocrust Soil	MPDELSLKILRTFREMGKESLDLHELFEAGGNDPDARREVFYAVERMVEQGLLEERGNDFYAPTGEGRRLAGEET
Ga0334950_020837_10_222	3300034028	Biocrust	MFEQLKKETLDLHEIFEAGGNDTEARTEVLYMVEQLVEEGLLEERGNDFYALTAEGRRAARAGVAGDRDE
Ga0334952_000204_26631_26852	3300034030	Biocrust	MFDELGKRELDLHELFEAGGNDPDARREVFYAVERLVEEGLLEERGNDFYAPTAAGRAASAAGEGTGESRRGA
Ga0334929_084634_166_384	3300034135	Hypolithic Biocrust	MFDEIRRESLDLHELFEAGGNDPDARREVLYAVEGLVERGLLEERGNDFYAPTEEGRRAGRGTAAGPPDEKG
Ga0334913_002074_2065_2310	3300034172	Sub-Biocrust Soil	MTDVTLRVLGMFDQLQKETLDLHELFEAGGNDPEARTEVFHAVENLVEAGLLEERGNDFYALTEEGRKQAPRATDVQPEGN
Ga0334937_102712_426_665	3300034221	Biocrust	MTNLRERVLGMFEQMGKETLDLHELFEAGGNDMEARKEVFFTVESLVEEGLLEERGNDFYALTAKGKSAAGSLTGGQSG
Ga0334931_103902_12_257	3300034377	Sub-Biocrust Soil	LDELTRRVLGMFEEIGREALDLHELFEAGGNDPDARREVFYRVESLVGRGLLEERGNDFYALTRAGREAAAAAAGEEGKGL
Ga0334960_017801_13_246	3300034402	Sub-Biocrust Soil	MFDEMGKDALDLHELFEAGGNDPDERRAVFYAVEELVAAGLLEERGNDFYALTAAGREAARGARRGGGEGRPDAAGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094364

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences