Metagenome / Metatranscriptome Family F077451

Basic Information
Family ID	F077451
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	64 residues
Representative Sequence	GGLGSLLGGRSSPGRWAGLAASFTELGVDLTTAKKFGPIVIDYVAHHGGEDLVDKIKAALKL
Number of Associated Samples	91
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.56 %
% of genes near scaffold ends (potentially truncated)	14.53 %
% of genes from short scaffolds (< 2000 bps)	14.53 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Most Common Taxonomy
Group	Unclassified (86.325 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (28.205 % of family members)
Environment Ontology (ENVO)	Unclassified (40.171 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (42.735 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.67% β-sheet: 0.00% Coil/Unstructured: 53.33%
Feature Viewer

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Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF11075	DUF2780	15.38
PF04461	DUF520	11.11
PF08534	Redoxin	6.84
PF07883	Cupin_2	3.42
PF00578	AhpC-TSA	3.42
PF07715	Plug	1.71
PF14691	Fer4_20	0.85
PF00589	Phage_integrase	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG1666	Cyclic di-GMP-binding protein YajQ, UPF0234 family	Signal transduction mechanisms [T]	11.11

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.32 %
All Organisms	root	All Organisms	13.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.32 %
cellular organisms	root	All Organisms → cellular organisms	13.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.32 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	13.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.32 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.32 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	2.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.32 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	2.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.32 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2.56 %

Scaffold	Taxonomy	Length	IMG/M Link
3300004146\|Ga0055495_10091041	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300009111\|Ga0115026_11538482	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300009609\|Ga0105347_1478303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	540	Open in IMG/M
3300009870\|Ga0131092_10005820	All Organisms → cellular organisms → Bacteria → Proteobacteria	26525	Open in IMG/M
3300015373\|Ga0132257_100424109	All Organisms → cellular organisms → Bacteria	1620	Open in IMG/M
3300017792\|Ga0163161_11328816	Not Available	626	Open in IMG/M
3300021316\|Ga0210351_1037241	All Organisms → cellular organisms → Bacteria → Proteobacteria	711	Open in IMG/M
3300024056\|Ga0124853_1221198	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300027484\|Ga0207458_1007686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	575	Open in IMG/M
3300027734\|Ga0209087_1155972	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300027890\|Ga0209496_10052294	All Organisms → cellular organisms → Bacteria → Proteobacteria	1557	Open in IMG/M
3300027900\|Ga0209253_10744512	Not Available	702	Open in IMG/M
3300028380\|Ga0268265_10201779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1726	Open in IMG/M
3300032144\|Ga0315910_11384317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	549	Open in IMG/M
3300033408\|Ga0316605_10293021	All Organisms → cellular organisms → Bacteria → Proteobacteria	1423	Open in IMG/M
3300033408\|Ga0316605_11192500	All Organisms → cellular organisms → Bacteria → Proteobacteria	735	Open in IMG/M
3300033416\|Ga0316622_102577791	All Organisms → cellular organisms → Bacteria → Proteobacteria	585	Open in IMG/M
3300033419\|Ga0316601_101130833	All Organisms → cellular organisms → Bacteria → Proteobacteria	784	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.18%
Host-Associated	Host-Associated	8.55%
Engineered	Engineered	4.27%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	46.15%
Terrestrial	Environmental → Terrestrial	41.03%
Plants	Host-Associated → Plants	8.55%
Bioremediation	Engineered → Bioremediation	2.56%
Wastewater	Engineered → Wastewater	1.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	39.32%
Freshwater	Environmental → Aquatic → Freshwater	31.62%
Marine	Environmental → Aquatic → Marine	10.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.98%
Sediment	Environmental → Aquatic → Sediment	4.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.56%
Metal	Engineered → Bioremediation → Metal	2.56%
Floodplain	Environmental → Terrestrial → Floodplain	1.71%
Activated Sludge	Engineered → Wastewater → Activated Sludge	1.71%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	30.77%
Sediment	Environmental → Aquatic → Freshwater → Sediment	14.53%
Lake	Environmental → Aquatic → Freshwater → Lake	7.69%
Wetlands	Environmental → Aquatic → Marine → Wetlands	7.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	7.69%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.27%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	2.56%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.71%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.71%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	1.71%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.85%
Pond	Environmental → Aquatic → Freshwater → Pond	0.85%
Coastal	Environmental → Aquatic → Marine → Coastal	0.85%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.85%
Sediment	Environmental → Aquatic → Marine → Sediment	0.85%
Sand	Environmental → Terrestrial → Soil → Sand	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	30.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	14.53%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	5.98%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	5.98%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.42%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	2.56%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.71%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.71%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.71%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.71%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	1.71%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.85%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.85%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.85%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.85%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.85%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	28.21%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	9.40%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	5.98%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	5.13%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	4.27%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.56%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	2.56%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.56%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.56%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	2.56%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.71%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.71%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.71%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.85%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.85%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.85%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	0.85%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.85%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.85%
Marine	Environmental → Aquatic → Marine → Wetlands → Sediment → Marine	0.85%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.85%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.85%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.85%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.85%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725002	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300000124	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 12_21m	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300004057	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2	Environmental	Open in IMG/M
3300004070	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2	Environmental	Open in IMG/M
3300004146	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D2	Environmental	Open in IMG/M
3300004155	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004266	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005219	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D2	Environmental	Open in IMG/M
3300005656	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB19-Kit	Engineered	Open in IMG/M
3300006040	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_30-Apr-14	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009509	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010412	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300013138 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_12m	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014298	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D1	Environmental	Open in IMG/M
3300014304	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D1	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300021316	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.485 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022309	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_4_1	Environmental	Open in IMG/M
3300024056	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300025130	Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal Spring (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025966	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025975	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026072	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D1 (SPAdes)	Environmental	Open in IMG/M
3300026346	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 C5	Environmental	Open in IMG/M
3300027484	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09.2A1-12 (SPAdes)	Environmental	Open in IMG/M
3300027721	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027734	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027972	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027975	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032276	Coastal sediment microbial communities from Maine, United States - Phippsburg worm burrow 1	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300033406	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034054	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A3A4.1	Engineered	Open in IMG/M
3300034076	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A5A4.2	Engineered	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICC_00462660	2067725002	Soil	LKSAPPPSTLSSLAGGLGSLLGGRNSTAGRWAGLAASFTELGVDIDTAKKFGPIVMEHVRKHGGEDLLGKLKGALKL
SwRhRL2b_0934.00000260	2162886007	Switchgrass Rhizosphere	LGGRSGGAGRWAGLAASFAELGVGIDTAKKFGPIVIDYVRQHGGADLVEKMRVALKV
BS_KBA_SWE12_21mDRAFT_100457973	3300000124	Marine	SSLAGGLGSLFGGKKSPGRWAGLAASFTELGIPIDTAKKFGPIVIDYVEHHGGEDLVDKIKDALGL*
JGI10216J12902_1140351282	3300000956	Soil	AGGLGSLLGGRSKAGRWAGLAASFTELGIDLDTAKRFGPIVIEYVRQHGGENLVDKIRAALKI*
JGIcombinedJ13530_1052584023	3300001213	Wetland	LGSLLGGKKSPGRWAGLAASFAELGIPIATAKKFGPIVIDYVEHHGGEDLVDKIKDALGL
Ga0055496_100293323	3300004057	Natural And Restored Wetlands	FGRNSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVAHHGGEDLVDKIRSALKI*
Ga0055488_101332652	3300004070	Natural And Restored Wetlands	SSLAGGLGSLLGGRNSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVKHHGGENLVGKMRAALKL*
Ga0055495_100910411	3300004146	Natural And Restored Wetlands	AAGRWAGLAASFAELGVDIDTAKKFGPIVIEHVRQHGGEDLVEKIRVALKV*
Ga0066600_101639291	3300004155	Freshwater	SLAGGIGSLFGGRSAAGRWAGLAASFAELGVDIDTAKKFGPIIIEHVREHGGEDLVEKIRVALKV*
Ga0062589_1025090031	3300004156	Soil	LGGRNSTAGRWAGLAASFAELGVDVETAKKFGPIVMEHVRKHGGEKLLGKLKGALKL*
Ga0055457_101351621	3300004266	Natural And Restored Wetlands	STLSSLAGGLGGLFGKNSPGRWAGLAASFTELGVPIETAKKFGPIVIDYVAHHGGEDLVDKIRSALKI*
Ga0069718_163615291	3300004481	Sediment	LFGGRKSSAGRWAGLAASFAELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALKV*
Ga0062383_107206061	3300004778	Wetland Sediment	SSLAGGLGSLLGGRSSPGRWAGLAASFTELGIDLATARKFGPIVIEHVREHGGEDLVDKIRAALKI*
Ga0062381_102392141	3300004808	Wetland Sediment	KAPPPSALSSLAGGIGSLLGGRNSPGRWAGLAASFTELGIDLKTAKKFGPIVIDYVAHHGGEDLVDKIKVALKL*
Ga0069004_100714141	3300005219	Natural And Restored Wetlands	LSSIAGGLGSLLGGKKSPGRWAGLAASFTELGIPIDTAKKFGPIVIDYVEHHGGEDLVDKIKDALGL*
Ga0073902_102650642	3300005656	Activated Sludge	APPPSALSSLAGGIGSLFGGRKSSAGRWAGLAASFAELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALNV*
Ga0073914_101167382	3300006040	Sand	PPSTLSSLAGGIGSMFGGRSAAGRWAGLAAPFAELGVDIDTAKKFGPIVLEHVREHGGEDLVDKIRVALKI*
Ga0079037_1005215821	3300006224	Freshwater Wetlands	SLLGGRSSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVEHHGGEGIVDQIKAALKI*
Ga0079037_1005750172	3300006224	Freshwater Wetlands	SLFGGRSAAGRWAGLAASFTELGVDIETAKKFGPIVIDYVRHHGGENLVKQMRAALKL*
Ga0105090_104306241	3300009075	Freshwater Sediment	LSSLAGGLGSLFGGRSSAGRWAGLAATFTELGVDIDTAKKFGPIVIDYVRHHGGENLVKQMRAALKI*
Ga0105090_104692952	3300009075	Freshwater Sediment	LGSLFGGRSSPGRWAGLAASFAELGVDLDTAKKFGPIVIDYVKHHGGEEIVDKMKVALKI
Ga0105098_102994492	3300009081	Freshwater Sediment	GSLLGGRNGPGRWAGLAASFAELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKMKVALKL*
Ga0105103_101117591	3300009085	Freshwater Sediment	LGSLFGGRSSPGRWAGLAASFTELGIDLDTAKKFGPIVIDYVRHHGGENLVGKMRAALKL
Ga0115026_104224342	3300009111	Wetland	GGRSSAGRWAGLAASFTELGVDIDTAKKFGPIVIDYVRHHGGENLVKQMRAALKI*
Ga0115026_115384821	3300009111	Wetland	NSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVKQHGGEDLVDEIRTALKI*
Ga0115027_102552871	3300009131	Wetland	PSTLSSLAGGLGSLFGGRSSPGRWAGLAASFTELGVDLNTAKKFGPIVIDYVAHHGGEDLVEKMKTALKL*
Ga0114129_116164281	3300009147	Populus Rhizosphere	PPPSTLSSLAGGLGSLLGGRNSTAGRWAGLAASFTELGVDVGTAKKFGPIVMEHVRKHGGEELLGKLKGALKL*
Ga0105097_108833252	3300009169	Freshwater Sediment	GSLFGGRSSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVKQHGGEDLVDEIKSALKL*
Ga0105096_100862972	3300009170	Freshwater Sediment	GSLLGGRSSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKMKAALKL*
Ga0105096_103110211	3300009170	Freshwater Sediment	GRKSAAGRWAGLAASFAELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALNVNV*
Ga0123573_100520151	3300009509	Mangrove Sediment	LSSLAGGLGSLFGGSSGPGRWAGLAASFTELGVDIDTAKKFGPIVIDYVRHHGGENLVDKMRTALKL*
Ga0123573_101130841	3300009509	Mangrove Sediment	PPPSALSSLAGGLGSLIGGNRGPGRWAGLAASFSELGVDLATAKKFGPIVIDYVKHHGGEDIVDKMKVALKL*
Ga0105347_14783031	3300009609	Soil	STAGRWAGLAASFAELGVDVETAKKFAPIVMEHVRQHGGEKLLGKLKGALKL*
Ga0131092_1000582025	3300009870	Activated Sludge	SPGRWAGLAASFAELGVDVATAKKFGPIVIDYVKEHGGAKLVGKIRKALGI*
Ga0134122_114011021	3300010400	Terrestrial Soil	PLSSIAGGLGSLLGGRSSAGRWAGLAASFSELGVDLTTAKKFGPIVIDYVREHGGADLVTKIKTALKL*
Ga0136852_114371422	3300010412	Mangrove Sediment	LLGGRSSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVKHHGGEGLVDKLKAALRL*
Ga0137436_10763431	3300011423	Soil	GLGSLLGGRNSTAGRWAGLAASFAELGVDVETAKKFGPIVMGHVRKHGGEKLLGKLKGALKL*
Ga0157308_100559612	3300012910	Soil	APPPSTLSSLAGGLGSLLGGRNSTAGRWAGLAASFAELGVDVETAKKFGPIVMEHVRKHGGEELLGKLKGALKL*
(restricted) Ga0172371_102484861	3300013138	Freshwater	APPPSTFSSLAGGLGSLLGGRSSPGRWAGLAASFTELGIDLETAKKFGPIVIEHMRKHGGENLVDKVRAALRL*
Ga0163162_129660602	3300013306	Switchgrass Rhizosphere	LGSLLGGRSSAGRWAGLAASFSELGVDLTTAKKFGPIVIDYVREHGGADLVTKMKTALKL
Ga0075341_10116993	3300014298	Natural And Restored Wetlands	PPPSALSSLAGGLGSMFGGRKSPGRWAGLAASFTELGIPINTAKKFGPIVIDYVEHHGGEDLVDKIKDALGLQA*
Ga0075340_11565401	3300014304	Natural And Restored Wetlands	GLGSMFGGRKSPGRWAGLAASFTELGIPINTAKKFGPIVIDYVEHHGGEDLVDKIKDALGLQA*
Ga0132257_1004241091	3300015373	Arabidopsis Rhizosphere	SAGRWAGLAASFSELGVDLTTAKKFGPIVIDYVREHGGADLVTKMKTALKL*
Ga0163161_113288162	3300017792	Switchgrass Rhizosphere	RSSAGRCAGLAASFSELGVDLTTAKKFGPIVIDYVREHGGADLVTKMKTALKL
Ga0190266_100126121	3300017965	Soil	SAPPPSTLSSLAGGLGSLLGGRNSTAGRWAGLAASFAELGVDVETAKKFGPIVMEHVRKHGGEKLLGKLKGALKL
Ga0207193_17472851	3300020048	Freshwater Lake Sediment	LFGGRNSPGRWAGLAASFTELGVDLGTAKKFGPIVIDYVAHHGGEDLVEKMKAALKL
Ga0210351_10372411	3300021316	Estuarine	GRSSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKLRTALKL
Ga0224510_104504911	3300022309	Sediment	PPPSTLSSLAGGFGSLLGGRNGPGRWAGLAASFAELGVDIDTAKKFGPIVIDYVKHHGGEGIVDKMKTALKI
Ga0124853_12211981	3300024056	Freshwater Wetlands	GGRSGPGRWAGLAASFAELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKMKVALKI
Ga0209594_11151741	3300025130	Groundwater	LSTLAGGLGSLLGGRSSPGRWAGLAASFTELGVDLTTAKKFGPIVIDYVAHHGGEDLVDKIKAALKL
Ga0207642_111019261	3300025899	Miscanthus Rhizosphere	SLAGGLGSLLGGRNSTAGRWAGLAASFAELGVDVETAKKFGPIVMEHVRKHGGEELLGKLKGALKL
Ga0207659_105324071	3300025926	Miscanthus Rhizosphere	AGGLGSLLGGRSSAGRWAGLAASFSELGVDLTTAKKFGPIVIDYVREHGGADLVTKMKTALKL
Ga0210105_10256032	3300025966	Natural And Restored Wetlands	KSAPPPSTLSSLAGGLGSLFGGRSSAGRWAGLAASFTELGVDIDTAKKFGPIVIDYVRHHGGENLVKQMRAALKV
Ga0210091_10078451	3300025975	Natural And Restored Wetlands	GLGSLFGGKKSPGRWAGLAASFTELGIPIDTAKKFGPIVIDYVEHHGGEDLVDKIKDALG
Ga0207640_119390812	3300025981	Corn Rhizosphere	GADTLLKNAAPAGALSSLAGGLGSLLGGKSGAGRWAGLATEFAGLRIDLATARKFGPIVMDYVRQHGGEELVDKMRTALNL
Ga0208292_10557711	3300026072	Natural And Restored Wetlands	GLGGLFGRNSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVAHHGGEDLVDKIRSALKI
Ga0256812_10028082	3300026346	Sediment	PPPSTLSSIAGGLGGLFGKNSPGRWAGLAASFTELGMDLDTAKKFRPIVIDYVAHHGGENLVEKMRVALRL
Ga0207458_10076861	3300027484	Soil	GRNSTAGRWAGLAASFAELGVDVETAKKFGPIVMEHVRKHGGEELLGKLKGALKL
Ga0209492_11031102	3300027721	Freshwater Sediment	FGGKSAAGRWAGLAASFAELGVDIDTAKKFGPIIIEHVRQHGGEDLVEKIRVALKV
Ga0209492_11098091	3300027721	Freshwater Sediment	AGGLGSLFGGRSSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVRHHGGEEIVDKMKFALKI
Ga0209087_11559722	3300027734	Freshwater Lake	LPVRSGAGRWAGLAASFAELGVDLDTAQKFGPIVIEYVRKHGGEHLVGKIKTALNV
Ga0209464_103743331	3300027778	Wetland Sediment	SLAGGLGSLLGGRSSPGRWAGLAASFTELGIDLATARKFGPIVIEHVREHGGEDLVDKIRAALKI
Ga0209450_110415492	3300027885	Freshwater Lake Sediment	PSALSSLAGGIGSLFGGRKSSAGRWAGLAASFAELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALNV
Ga0209496_100522941	3300027890	Wetland	SPAGRWAGLAASFAELGVDIDTAKKFGPIVIEHVRQHGGEDLVDKIRVALKV
Ga0209496_102313361	3300027890	Wetland	GSLLGGRSGPGRWAGLAASFAELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKMKVALKI
Ga0209253_107445122	3300027900	Freshwater Lake Sediment	GGRSSVGRWAGLAASFTELGVDIDTAKKFGPIVIDYVAHHGGENLVDKMRKALKI
Ga0209079_100958342	3300027972	Freshwater Sediment	LKSAPPPSTLSSLAGGLGSLFGGRSSPGRWAGLAASFTELGIDLDTAKKFGPIVIDYVRHHGGENLVGKMRAALKL
Ga0209391_103444681	3300027975	Freshwater Sediment	LGSLFGGRSSAGRWAGLAASFTELGVDIDTAKKFGPIVIDYVRHHGGENLVKQMRAALKI
Ga0268265_102017791	3300028380	Switchgrass Rhizosphere	SRSSAGRWAGLAASFSELGMDLTTAKKFGPIVIDYVREQGGAELVAKLKTALKL
Ga0315290_106197042	3300031834	Sediment	KTAPPPSTLSSLAGGIGSLFGGRSAAGRWAGLAASFAELGVDIDTAKKFGPIVLEHVREHGGEDLVDKIRVALKI
Ga0315297_110995761	3300031873	Sediment	LAGGLGSLLGGRSSPGRWAGLAASFTELGIDLTTARKFGPIVIEHVREHGGEDLVDKIRAALKI
Ga0307406_105788201	3300031901	Rhizosphere	GSLLGGRSRAGRWAGLAASFSELGIDLDTAKRFGPIVIEYVREHGGENLVGKIRDALKI
Ga0315284_104031323	3300032053	Sediment	APPPSTLSSLAGGLGSLLGGRNSPGRWAGLAASFTELGIDLDTARKFGPIVIEHMREHGGEDLVDKVRTALKV
Ga0310890_104004821	3300032075	Soil	PLSSIAGGLGSLLGGRSSAGRWAGLAASFSELGVDLTTAKKFGPIVIDYVREHGGADLVTKMKTALKL
Ga0315910_113843171	3300032144	Soil	SKAGRWAGLAASFTELGIDLDTAKRFGPIVIEYVRQHGGENLVGKIREALKI
Ga0315283_105444921	3300032164	Sediment	LMDAPPPSALSSLAGGIGSLFGGRSAAGRWAGLAASFAELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALKI
Ga0315271_115520561	3300032256	Sediment	LKSAPPPSTLSSLAGGLGSLLGGRSSAGRWAGLATTFTELGVDLDTAKKFGPIVIDFMREHGGENLVDKVRTALKV
Ga0316188_106015371	3300032276	Worm Burrow	LLGGRRSPGRWAGLAASLTELGVDLETAKGFRPIVIDYVRTHGGEDLVDKMQRALKI
Ga0315287_101773634	3300032397	Sediment	LSSLAGGIGSLFGGRKSAAGRWAGLAASFAELGVDIDTAKKFGPIVIEHVRQHGGEDLVDKIRVALRI
Ga0316604_102492182	3300033406	Soil	LRKAPPPSTISSLAGGLGSLLGGRSGPGRWAGLAASFTELGVDLNTAKKFGPIVIDYVKHHGGEDLVDKMKVALKL
Ga0316604_105941011	3300033406	Soil	LGGRSGPGRWAGLAASFAELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKMKVALKI
Ga0316605_102930212	3300033408	Soil	RSGPGRWAGLAASFTELGVDLNTAKKFGPIVIDYVKHHGGEDLVDKMKVALKL
Ga0316605_107625781	3300033408	Soil	AKLIKSAPPPSTLSSLAGGLGSLFGGRTAAGRWAGLAASFTELGVDIETAKKFGPIVIDYVRHHGGENLVKQMRAALKL
Ga0316605_107783361	3300033408	Soil	ELLKKAPPPSTLSSLAGGLGSLFGGRSSPGRWAGLAASFTELGVDLNTAKKFGPIVIDYVAHHGGEDLVEKMKAALKL
Ga0316605_111925002	3300033408	Soil	RNGPGRWAGLAASFTEIGVDLETARKFGPIVIEYVRQHGGEDLVEKMRVALKV
Ga0316603_102099551	3300033413	Soil	LLGGRNSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVEHHGGEGIVDQIKAALKI
Ga0316603_103416301	3300033413	Soil	KLLSKAPPPSTISSLAGGLGSLLGGRNGPGRWAGLAASFAELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKMKVALKL
Ga0316603_113292141	3300033413	Soil	LAGGLGSLLGGRNSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVEHHGGEGIVDQIKAALKI
Ga0316603_118251571	3300033413	Soil	AGGLGTLLGGRNSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVRQHGGEDLVDEIRTALKI
Ga0316619_102090592	3300033414	Soil	KAPPPSTLSSLAGGLGTLLGGRNSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVRQHGGEDLVDEIRTALKI
Ga0316622_1011996271	3300033416	Soil	SLFGGRSSPGRWAGLAASFTELGVDLNTAKKFGPIVIDYVAHHGGEDLVEKMKTALKL
Ga0316622_1024837171	3300033416	Soil	GLGSLLGGRNSPGRWAGLAASFAELGVDIGTAKKFGPIVIDYVRHHGGENLVDKIRAALK
Ga0316622_1025777912	3300033416	Soil	RSAAGRWAGLAASFTELGVDIETAKKFGPIVIDYVRHHGGENLVKQMRAALKL
Ga0316601_1009590232	3300033419	Soil	PSALSSLAGGLGSLFGGRSSAGRFAGLAASFAELGVDIDTARKFGPIVIDYVREHGGENLVEKINAALKL
Ga0316601_1011308332	3300033419	Soil	GRNGPGRWAGLAASFAELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKMKVALKI
Ga0316613_102416752	3300033434	Soil	LSSLAGGLGSLLGGRNSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVEHHGGEGIVDQIKAALKI
Ga0316613_103110732	3300033434	Soil	LFGGRKSATGRWAGLAASFAELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALNV
Ga0316613_109090401	3300033434	Soil	AGGLGSLFGGRSSPGRWAGLAASFTELGVDLNTAKKFGPIVIDYVAHHGGEDLVEKMKAALKL
Ga0316613_112475302	3300033434	Soil	APPPSTLSSLAGGLGSLLGGRNSPGRWAGLAASFTELGIDLDTAKKFGPIVIDYVRHHGGENLVGKMRAALKL
Ga0316600_101269392	3300033481	Soil	GSLFGGRNSPAGRWAGLAASFAELGVDIDTAKKFGPIVIEHVRQHGGEDLVDKIRVALKV
Ga0316600_103356922	3300033481	Soil	APPPSTLSSLAGGLGSLFGSRNSPGRWAGLAASFTELGVDLGTAKKFGPIVIEYVKEHGGENLVEKMRVALKI
Ga0316600_110360931	3300033481	Soil	FGGRRSAAGRWAGLAASFAELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALNVNV
Ga0316627_1000222751	3300033482	Soil	GLGSLLGGRNSPGRWAGLAASFTELGVDLDTAKKFGPIVIDFVKEHGGENLVEKMRSALK
Ga0316627_1013049252	3300033482	Soil	APPPSTLSSLAGGLGSLLGGRNSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVEHHGGEGIVEQIKAALKI
Ga0316624_100642583	3300033486	Soil	KAPPPSALSSLAGGIGSLLGGRNSPGRWAGLAASFTELGIDLKTAKKFGPIVIDYVAHHGGEDLVDKIKVALKL
Ga0316630_118519041	3300033487	Soil	PPPSALSSLAGGIGSLFGGRNSPAGRWAGLAASFAELGVDIDTAKKFGPIVIEHVRQHGGEDLVDKIRVALKV
Ga0316621_105233181	3300033488	Soil	AGGLGSLLGGRNSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVEHHGGEGIVDQIKAALKI
Ga0316628_1019127851	3300033513	Soil	PPPSALSSLAGGIGSLFGGRKSAAGRWAGLAASFAELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALRI
Ga0316628_1024483441	3300033513	Soil	KLLAKAPPPSTLSTIAGGLGGLFGRNSPGRWAGLAAAFTELGVDLDTARKFGPIVIDYVAHHGGENLVQKMRAALKL
Ga0316616_1005026541	3300033521	Soil	GLGSLFGGRSAAGRWAGLAASFTELGVDIETAKKFGPIVIDYVRHHGGENLVKQMRAALK
Ga0316616_1026112331	3300033521	Soil	PPSTLSSLAGGLGSLFGGRSSPGRWAGLAASFTELGVDLNTAKKFGPIVIDYVAHHGGEDLVEKMKTALKL
Ga0316617_1011191312	3300033557	Soil	TLLGGRNSPGRWAGLAASFTELGVDLDTAKKFGPIVIDYVKQHGGEDLVDEIRTALKI
Ga0373891_001480_2_211	3300034054	Sediment Slurry	STLSTLAGGLGSLLGGRSSPGRWAGLAASFTELGVDLTTAKKFGPIVIDYVAHHGGEDLVDKIKAALKL
Ga0373891_034457_557_778	3300034054	Sediment Slurry	APPPSTLSSLAGGLGSLFGGRSSPGRWAGLAASFTELGIDLDTAKKFGPIVIDYVRHHGGENLVGKMRAALKL
Ga0373898_075757_357_545	3300034076	Sediment Slurry	GGLGSLLGGRSSPGRWAGLAASFTELGVDLTTAKKFGPIVIDYVAHHGGEDLVDKIKAALKL
Ga0364945_0154915_3_191	3300034115	Sediment	GLGALLGGRNSTAGRWAGLAASFAELGVDVETAKKFGPIVMEHVRKHGGEKLLGKLKGALKL
Ga0364931_0090635_1_189	3300034176	Sediment	GLGSLLGGRNSTAGRWAGLAATFTELGVDLDTAKKFGPIVMEHVREHGGEDLLDKLKVALKL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077451

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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