Sample 3300015064

Overview

Basic Information
IMG/M Taxon OID	3300015064 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121480 \| Gp0191527 \| Ga0167641
Sample Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7B, Adjacent to main proglacial river, mid transect (Watson river))
Sequencing Status	Permanent Draft
Sequencing Center	University of Bristol
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	58507862
Sequencing Scaffolds	55
Novel Protein Genes	57
Associated Families	53

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	12
All Organisms → cellular organisms → Bacteria → Acidobacteria	6
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Dulcicalothrix → Dulcicalothrix desertica	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Metagenomes Of Arctic Soils
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → glacial feature → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Russell glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.08225	Long. (^o)	-50.322435	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000796	Metagenome / Metatranscriptome	887	Y
F001675	Metagenome / Metatranscriptome	654	Y
F002416	Metagenome	561	Y
F002570	Metagenome / Metatranscriptome	547	Y
F004219	Metagenome / Metatranscriptome	448	Y
F006361	Metagenome / Metatranscriptome	375	Y
F006858	Metagenome / Metatranscriptome	363	Y
F007987	Metagenome / Metatranscriptome	341	Y
F008187	Metagenome	337	Y
F009385	Metagenome / Metatranscriptome	318	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0167641_100002	All Organisms → cellular organisms → Bacteria	29074	Open in IMG/M
Ga0167641_100161	All Organisms → cellular organisms → Bacteria	10550	Open in IMG/M
Ga0167641_100344	All Organisms → cellular organisms → Bacteria → Acidobacteria	8263	Open in IMG/M
Ga0167641_100686	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	6208	Open in IMG/M
Ga0167641_100792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5868	Open in IMG/M
Ga0167641_100864	All Organisms → cellular organisms → Bacteria	5636	Open in IMG/M
Ga0167641_100926	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5473	Open in IMG/M
Ga0167641_101089	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5040	Open in IMG/M
Ga0167641_101171	All Organisms → cellular organisms → Bacteria	4837	Open in IMG/M
Ga0167641_101547	All Organisms → cellular organisms → Bacteria → Acidobacteria	4101	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167641_100002	Ga0167641_10000210	F072496	VVRFGVVTSDWKFVLAATLIGYGVPFWLDLKLWKVPLELWTGILAAGLSIAFFNFVRIGRCPFWLQHRLRAITEKPCHRRTIPADLAREPQALWMTQGAD*
Ga0167641_100161	Ga0167641_1001617	F002570	MILAGQVRAGQARGGSSAAPVDKYVNRDYKGGSTFNLVSAGPNVARCGPFPQNIELSFEGSGIDTEGGYNTAVFSACTNTTTNLVFDLKATDTYVQSGDQVFIEGDSFVQVANPANCVATNSHGAPFRITGGTGGRAGAKGHGHFHITSNLTPCNGQTRPAQVWFDGVFKLEQ*
Ga0167641_100344	Ga0167641_10034424	F055342	MSKTSRTKYHVRKRIFLNRDLNMRAFAIGIVEDTREIPNEKDDWKSGWIELVLADCYRHVSFDFDLSTKEDRANSLYKIRRIAAIVDAVREAIETEAKSIDEREAPKPKAKAKGAAG*
Ga0167641_100686	Ga0167641_1006865	F072496	MRARPIRSNIYLPVVRFGVVTSDWKFVLAAALLGYGIPFLLDLKLWRVPLELWTGLLAAAVSILFFNFVRIGRRPFWLQHHLRAAMESPCKRRTLPRDQMRRPRRAWMRQGA*
Ga0167641_100792	Ga0167641_1007924	F023156	MRKRLRVIILLGAVLAIMSGSVVTPKATMQSERTLVGEWIMRSTPLDGQMFSRMGNSLGFPDRDMVFTQDGDLRDGVVLREDQGPNVRPLGAWRMVGERFSATFQLWCPDSNGPCGSVIMRGKFLDYDSVKGSMTVFFDVGDGTRPTGYDTWVFSFRGNRKTGGSN*
Ga0167641_100864	Ga0167641_1008645	F080405	LPCHIRYDTVGGVRDKESTAITITLPLALDRALQALADKKHCGNKSAAIREVLYKEAGVQGTLRLNEKKDSDSVTKAEHRSVKYGSRRNKTKK*
Ga0167641_100926	Ga0167641_1009266	F000796	MLLGHELRSQLAHSPALWLTFGSLAVGHLWKAFQSGYDVMPEDQLKQRVRWDVCLLVLRAGAMFLMSAYRLYLILVPLMALLLTYMEVWPERVLGAVFGDPSRLWEYDPDEKTKR*
Ga0167641_101089	Ga0167641_1010899	F029836	MKRGKSVVLILAACAMLFASASQISAGQSEYSSPDGRLRIKHSPVLGINIPIAVWIDGRMAGAFAKGHVYERYLTPGRHDVYASRPSRLSDSWYGTLDVRPGETYSFVVKCTVNRVILQPVSRID*
Ga0167641_101171	Ga0167641_1011711	F013464	ILLRRAPDDPESFDLATWTGIVWQIPRTNSLGDTIYIQIPDYMVVETMPATTKPDELYRQPKDESEKRR*
Ga0167641_101547	Ga0167641_1015472	F057627	MDPTLIATIAGVIGGVFALKATKRQVEVMLLQSRGDVNERLYSQSLDIMRFFAENPEVRPYFYDNKDLSKAPTELEKLKVLSTAEMVSGFMELVALQMAEQPAEIQPRWKAYILDQYNCSAVLREHVDTCRAWYAEDYLRLLPAKSSEPSTQTVPARRDA*
Ga0167641_101586	Ga0167641_1015863	F009385	MFILKDKTQLEKAIAKAKTIRPRVEFDHFGRYRVSGSKGGFYTVICKKSDNGYKLVDCTCKGGEKGLVCYHAVSALSLHIGLAKQRQSA*
Ga0167641_101850	Ga0167641_1018504	F001675	VWDTKRQIIWLVVGISFGTFIVYMDAHDEAGRFDGTVFAFWEIILLAIILTLFYFYSRKKT*
Ga0167641_102024	Ga0167641_1020242	F032594	MTKTLEREIDRTVRRKREQLSAIREEVENLLDYLAVLEARAKDAGKPRLSHDEVKKRSG*
Ga0167641_102337	Ga0167641_1023372	F009385	MFILKGIEQLQNAINKARKTRPSVKFRSFGNYSVKGSTGFYTVICRKDESGNKVVQCECKGAERGLVCYHAAAALSLHVGLAKQRQQHA*
Ga0167641_103008	Ga0167641_1030081	F058777	IVALARTAYAAQTINGGAIKKQTIGAGKLKHKTLTGYQINTNKLGVVPAAQRASHTYWAVVNNPPGAGNAALARASDATITATEGGGAVVITFPINVSGCANVAGRDNAGTTVPGAGYAQTNTSPANPNAIEVRTRDEKGADADADFHLIVVCP*
Ga0167641_103133	Ga0167641_1031333	F033618	VAPLKTFVEFMPQSKRKQSFYFPRTTLVVEIERRCAFTGCAARNHIGLTKQEAIEYRGFECFQCEQWNDDRLAQPELPDSWETSS*
Ga0167641_103588	Ga0167641_1035884	F024930	MKNEGALRMRFLRYDGIYRSDVSSLLFTPGAYPAFRSGRCQGIGQAGKNLPCPSSAMSSGRLFLDGLLASIARLRFTGMISIKLLPDRRE*
Ga0167641_103894	Ga0167641_1038944	F080405	LPCHICYDTVAGVRDKESTAITITLPLALDRALQTLADQKHCGNKSAAIREVLYKEAGIQGKLRLNEKKDSDAVAKAEHRSVKYGSRKRKSKK*
Ga0167641_104503	Ga0167641_1045032	F055129	MAVVLTDIQIAFAAGALFADAGAPVIEVARKESEAALAKLYSSYMLRSLIYAGVFLGPVATISLMAYPAWETQYLSGIFDHTVAYNDTVNFPFNAYPYGIFLMAVFVAGWFGNWLGFKWVLAGARKRLRILYLVIVAITFAVVWLRYPAPTQVCDYEHFKADPFALPCRYYLTHKPFFYSFIVLLLLAGLPLVIGFIQVRLSVKKLRVK*
Ga0167641_104554	Ga0167641_1045542	F028754	MALVSTMAEKGQTARIYDIPDGDLGKYSQVQVEESKLAQSGETVAGTENAKELEAASPEGDVQAYGGWCRCYFRMAGQWWYKDQPCSWPCPPLY*
Ga0167641_105025	Ga0167641_1050253	F085666	MGERASTFFPFGIAVVLPPAGLLLGLLNIQQEKRELGIRLIVVSLLAAVVWVLLFVG*
Ga0167641_105549	Ga0167641_1055492	F014266	MSYQHVENLLIRFRGQLVIIKTVSGGVYEGSIADVTNDYVALKIKTVASEGEQVIVLLQSIEAVFPQGK*
Ga0167641_105807	Ga0167641_1058073	F064859	MKNIMIIAAAIVIGLSGQAFARIGQTEEQVSALFGKPIDAGTLDKEGVTTNMYKNPSGEYHALVQFLKGHSVAEAYS
Ga0167641_106297	Ga0167641_1062973	F093566	RDLFLIAHQQGASMRADFVKFQAYQPPPEGFLSSVDFIDQLDLEGDGVGEVFANQGGFDGYAYVVFKRVGGRWREVYSMIGDAC*
Ga0167641_106551	Ga0167641_1065511	F004219	MARISGLEKNQAPWHLRWFYRVMRKMFGKDLTPVKMQMRVPGIVWGTIGMEAGLGRK
Ga0167641_106626	Ga0167641_1066263	F092375	MNTQIMGSTRPKLWPPKALQASGPGDRRSPTLSGTELRRIVTEVLG*
Ga0167641_106712	Ga0167641_1067122	F002416	MKRVIEAEKIKRSKGMNNSMYLPNIPGLENSRAARIGQRLLAMAFALKVLNGFAAAALLLVVSAAGATAQTPSGSFFNGNSSQLGNSLRSVTFFLAAAMIIAGIIFIAVGIITSGLRESLSTWKFITGAACFAFGGVCAAVYAFSQGDSVPLDNSF*
Ga0167641_107821	Ga0167641_1078212	F091407	MAIPVGASAQIYRDRSYNQNRDQYDRGDRRQVREAIRGVDNSAARLESDLNVNQGRRVLGLFWVGNTNSRAVTEVRDFRLAVKQLRTAANNGRDLRDSYDEARVVLDQGMRLDRYLRVRTGSAQVDADLSELRSNLNLIANAYNLRLTY*
Ga0167641_107992	Ga0167641_1079921	F011244	MSLTEELKKKLRELNTEFEREMRARGFEPSQADNVAWPAHLASLYAERERIQAELAEMEGSNDD*
Ga0167641_108022	Ga0167641_1080221	F035984	MKSRCAFSWTVLAFIILMPLIAQAQTPSPSPTPIAARSLSDNISALSQRAVSLLPYINDEIVLKLIGWFELLAWVFGNCLAGFAMLRIMREDNGEGSNLYWWLGRLALFFMLSGT
Ga0167641_108643	Ga0167641_1086432	F106157	MENFLKTLIGKRIDVFCGATSSLRGEAVKVADGVLHLKDDEDEVCYIAIEKIIAVWEKRDKERHSGFVFKS*
Ga0167641_108774	Ga0167641_1087741	F008187	MFSKLIIFLATLLLCLSPLLISRGATTAPRDTSWFFVEVETKVTRKGVETSSENPEERRWYMSTVAVLPEDVPSYSLVNKKIIPYFNRSVMEPLEARGFALDFYDQDVKLSGENTQIDYATKEEAEEVRNKEIEHRKGQGGNIYSFELDFSSSKGDETSKPKLIYRDKA
Ga0167641_108786	Ga0167641_1087862	F063781	MDVSVEIHCETCGSANYSLPGGSGDDAPIRCNDCGAPQGTIGELRAALMEQVLDHSAEALRPAARGQAIAWP*
Ga0167641_108801	Ga0167641_1088012	F084381	MAVLLPVAHAAHWLWVLYLPPVLIVIVSVVGSKLAERRRRR*
Ga0167641_108907	Ga0167641_1089072	F030825	MSTITEIQEAIDKLPSSEKSALAAWLQSKEEPIMSEAEEAALLARLDKATAELGAGKGVPLERVREKIRGWAGK*
Ga0167641_109216	Ga0167641_1092161	F045796	MSLSIHSLQSLAISLVGAIVASSLFLSAAVGPVPVI*
Ga0167641_109459	Ga0167641_1094591	F006361	VKVIEQFYHVKHQSIPLLARAGMKAVRTAARIKGGEYRKLAEAGSVKVAFFEDQLFDSHGQIASFKAAMQTTLTRNWSPLVHTMAPKDEEQTHIYVREAGDKFSVLVVTIERHEATVVQATVAPQVLADLMKDPGEMGKALTEDATINDN*
Ga0167641_110546	Ga0167641_1105462	F097047	MPVNESSATALVRFTGLGIICFNKDRKRGEIGAIRDDKHKLTLKIQKPVFQDGVDKDIIVYQDIASYAKLPKEDVQIEIKAAGKPAIEGYETYQSGDFDRLASADVNDFRWIVNMNALHGETALAPTAAGKHPLAKIYIGNGLFYAHKLDRNLFFERIEKDAGGTPLQRETFGNVAETIGVKIEG
Ga0167641_110945	Ga0167641_1109452	F018577	MITILWTGLLALGTIILIYKEMTALLYILATLGVTALLVVVAKADLAHAEKLTGAPRRGDDAATGGGVTSTFGNRQS*
Ga0167641_111638	Ga0167641_1116381	F023404	MPKGVRKSITIPGLLAPAVKRRSGEFGHSIFAPYAVELVCYDLRSDAKHEITVAIARDTQAAQDAVDRELVSRYRPGQKREGLLVQLVERIHHLKDVATRSRHDLPVQLSAVPERVTFPLDIWRLVDVRWQELGYPSFSAYVTGLIRYDLLVGGPHSSITADPRSKLQRKLTRKTLAAHRRGGRRKILLDHLIEEAEG
Ga0167641_111638	Ga0167641_1116382	F007987	MIKQASTDHLEAAGSGSFSSATTIAALLFLAAKFPHRQFNSAELSVLSGVGRTAMSQIKNASDTPFSLGKCTLQRLDAWLAKHPGYKQN*
Ga0167641_111684	Ga0167641_1116841	F015256	MRRNTFVAILGLVILFGSAATAAAQVKRVQMHIGGYLCGN*
Ga0167641_112217	Ga0167641_1122171	F006858	MPLNSSTAFASKSPSLKSRRIAFAFCLIALAALFLAGCGKGAGGNGLHVKSPATGEKNLAAKSGYSFAVTKTFTDTSNKITTAPSSRVYVANYDLDAGNFAMTLDKPLTSDEHLRVTFSLVGEQGENEKTPLKAGTYSAKADKFMRVEDVGIVSRKAGADSKVWLDRSTLTGEVKVTSVSGDTMSGDIDVSAGETSIKGSFTAKILTRK*
Ga0167641_113639	Ga0167641_1136392	F093149	MSDQEDAGLELRRTQLEMKLLEVDERMRSEMRARGFDPAQADNLALTGPLAKLYMERENLQAELELLSGTVDRG*
Ga0167641_117771	Ga0167641_1177711	F014997	SLAIMDGMTRIGYEIANGNESGQRSVLQQLYLAQRDSFNDSYSKFQRNLFTVTVDGRETAVNPVPLNGELVLGIIVDSESTIQNFDHKIDVSQWDIGTMMTWLTFERALLEFGDLILVLLGAALTLGLKLAMPFMIACIVDKNFASKTTYPFFYGVVALTLVWPSVSKIIRIVAYMWGNVAMAVGDNSPLYIWNYQTMRAISNPLVQPQYTVALAVFAMGLGALCLYGTPFISLYLLSGRIYE
Ga0167641_117916	Ga0167641_1179161	F067546	TPVAARRAPVTVRTEGAAVVLELADLLDAGTAEALVAAAEAALRTDPERVDIDLRALRSWTQDGVVALVRCREICSDLPDGLHYRTGRGPGRSALLAAYT*
Ga0167641_118601	Ga0167641_1186011	F016214	GDFTFDERVVTFQSQPVQKAGITGGDWNVSGNVLPGAGPIRTLRVSAFSNDFTPLSGKGTLFELRMTRVSKAAQSTPLLWAAPPDQFIFIDADLNIQKPGYTGPGSIIASGKRK*
Ga0167641_118729	Ga0167641_1187291	F015389	MKKSNLVCIGLRAKTGRAIAVVLGGSIDSPTIVMKLEIGLTDPKIPGTFQPYHEVMELPWDQSEKSVLKFTRAIEAVARKALASLIKELQARGMKAVGVGIVGAKDRDLGRIGNYHIRAHAAEGLLFRQVLDLAADANGLKRRTFPDRELDQIAALELGKDAAGVK
Ga0167641_119673	Ga0167641_1196731	F015258	MSRRITTIDDSSSVLLPQEAVDALGVDPGGELDIEIVGKVLVVRSVEDAQRSREFADTFESVLKKRREAYAQLAEGHE*
Ga0167641_119896	Ga0167641_1198961	F025623	MAKQTPGNDPGFKVVCITCGVKIRENASDDSYGMCLKCFYTMLAMRLRTQKRVAAGEFVSER*
Ga0167641_121360	Ga0167641_1213601	F030320	MDSFALSERWNGWTDLIVMVEAARAAAAAGPLDPLVCEVALDWDDDDTTLDSLDELQALLRSGAEPEAMEIAVAHVVESEANLTLAYNGRWLQINGAGSDWERASQAYRAAQVEIALVAGITTFKLPTLPRDTVAETRKRLSEPPG*
Ga0167641_122373	Ga0167641_1223732	F047196	MNNRESLGAYEVPRVVDYGDLQKLTAACLGGSGGDAGYPGTVGGYTVGPSNPAAGCKSNP
Ga0167641_122685	Ga0167641_1226852	F037408	VDRRLANRNLRTALVAGTIIFVVFALSFLVGLIY*
Ga0167641_123109	Ga0167641_1231092	F063781	MDVSVEIHCEACGSANYSLPEGDGAEAPIRCNDCSAHQGTIGELRASLLQQVIDHSAEALRRDLDRLLAAKL*
Ga0167641_125539	Ga0167641_1255391	F038402	MAMRITYPDGSTEIIPKATLVDTQNFHEGMYDFYDEGGTMLVQIDMHIQIK
Ga0167641_126615	Ga0167641_1266151	F010239	ETAASRHWAMMGFDTLNRAIEGQLVAVRQADEGNDYVVEVKFNSEDTVRYWISKQTFLIDRIVTRYNSKVLIEEQRSDYRRADCMMLPFHIVTRLQGQPMADLDITSYDVKTDVPASRFTITALP*
Ga0167641_128283	Ga0167641_1282831	F078433	MSKLMILFVLFVSGSLYDPPRVLNHLVPGATAIGWHIKSTFGLR*

Showing 1 to 57 of 57 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300015064: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7B, Adjacent to main proglacial river, mid transect (Watson river))

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences