Metagenome / Metatranscriptome Family F092375

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092375
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	46 residues
Representative Sequence	MNVHMIGSKRPKLYPPKALLAAGPIERRSPTLSGFELRHIVTEMLG
Number of Associated Samples	85
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.31 %
% of genes near scaffold ends (potentially truncated)	19.63 %
% of genes from short scaffolds (< 2000 bps)	87.85 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.131 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (8.411 % of family members)
Environment Ontology (ENVO)	Unclassified (59.813 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (70.093 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.97% β-sheet: 0.00% Coil/Unstructured: 77.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01176	eIF-1a	49.53
PF00313	CSD	18.69
PF04820	Trp_halogenase	6.54
PF04226	Transgly_assoc	1.87
PF01434	Peptidase_M41	0.93
PF01839	FG-GAP	0.93
PF02604	PhdYeFM_antitox	0.93
PF10431	ClpB_D2-small	0.93
PF09694	Gcw_chp	0.93
PF14559	TPR_19	0.93
PF03129	HGTP_anticodon	0.93
PF01257	2Fe-2S_thioredx	0.93
PF12915	DUF3833	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0361	Translation initiation factor IF-1	Translation, ribosomal structure and biogenesis [J]	49.53
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	1.87
COG0124	Histidyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0423	Glycyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	0.93
COG0441	Threonyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0442	Prolyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1905	NADH:ubiquinone oxidoreductase 24 kD subunit (chain E)	Energy production and conversion [C]	0.93
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.93
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	80.37 %
Unclassified	root	N/A	1.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	78.50 %
Unclassified	root	N/A	1.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	71.03 %
Unclassified	root	N/A	1.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	64.49 %
Unclassified	root	N/A	1.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	9.35 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	8.41 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	1.87 %
Unclassified	root	N/A	1.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Sphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium	8.41 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	8.41 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	1.87 %
Unclassified	root	N/A	1.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Sphingobium sp. SCG-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. SCG-1	8.41 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	8.41 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	1.87 %
Unclassified	root	N/A	1.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZ032L002IF4YE	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
2199352024\|deeps__Contig_162722	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300001989\|JGI24739J22299_10175109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. SCG-1	632	Open in IMG/M
3300002568\|C688J35102_120960134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3192	Open in IMG/M
3300005329\|Ga0070683_100332360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1447	Open in IMG/M
3300005331\|Ga0070670_100339793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1318	Open in IMG/M
3300005334\|Ga0068869_100564678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	958	Open in IMG/M
3300005338\|Ga0068868_101588733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	614	Open in IMG/M
3300005339\|Ga0070660_101419311	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300005343\|Ga0070687_100979137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	612	Open in IMG/M
3300005355\|Ga0070671_100334753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1291	Open in IMG/M
3300005356\|Ga0070674_102047703	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300005364\|Ga0070673_101719763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	594	Open in IMG/M
3300005457\|Ga0070662_101371328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	609	Open in IMG/M
3300005459\|Ga0068867_100948687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	777	Open in IMG/M
3300005535\|Ga0070684_100334622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1392	Open in IMG/M
3300005535\|Ga0070684_100754115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	909	Open in IMG/M
3300005539\|Ga0068853_101896634	Not Available	578	Open in IMG/M
3300005544\|Ga0070686_100000186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	43742	Open in IMG/M
3300005544\|Ga0070686_101834868	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300005548\|Ga0070665_100000334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	72297	Open in IMG/M
3300005564\|Ga0070664_101140726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	735	Open in IMG/M
3300005578\|Ga0068854_100365581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1185	Open in IMG/M
3300005587\|Ga0066654_10240590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	952	Open in IMG/M
3300005842\|Ga0068858_101082614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	787	Open in IMG/M
3300006177\|Ga0075362_10698433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	529	Open in IMG/M
3300006237\|Ga0097621_101809729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	582	Open in IMG/M
3300006854\|Ga0075425_102888544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	527	Open in IMG/M
3300006871\|Ga0075434_100303290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1617	Open in IMG/M
3300009093\|Ga0105240_11446245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	722	Open in IMG/M
3300009098\|Ga0105245_11467507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	733	Open in IMG/M
3300009098\|Ga0105245_12108242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	617	Open in IMG/M
3300009098\|Ga0105245_12209871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	604	Open in IMG/M
3300009174\|Ga0105241_11570858	All Organisms → cellular organisms → Bacteria → Terrabacteria group	635	Open in IMG/M
3300009545\|Ga0105237_11495900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	682	Open in IMG/M
3300009551\|Ga0105238_11508810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	701	Open in IMG/M
3300009551\|Ga0105238_12277038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. SCG-1	577	Open in IMG/M
3300010397\|Ga0134124_12133467	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300010397\|Ga0134124_13032392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. SCG-1	513	Open in IMG/M
3300010400\|Ga0134122_10335395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1311	Open in IMG/M
3300010401\|Ga0134121_10584484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1042	Open in IMG/M
3300011241\|Ga0137476_106803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	678	Open in IMG/M
3300011244\|Ga0137483_101546	All Organisms → cellular organisms → Bacteria → Proteobacteria	2775	Open in IMG/M
3300012212\|Ga0150985_103916420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	938	Open in IMG/M
3300012212\|Ga0150985_114153579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	717	Open in IMG/M
3300012212\|Ga0150985_115455613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. SCG-1	562	Open in IMG/M
3300012212\|Ga0150985_116804042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	747	Open in IMG/M
3300012212\|Ga0150985_122739256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	740	Open in IMG/M
3300012469\|Ga0150984_100078174	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300012469\|Ga0150984_102783843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	771	Open in IMG/M
3300012469\|Ga0150984_103948801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	574	Open in IMG/M
3300012469\|Ga0150984_111355977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	656	Open in IMG/M
3300012469\|Ga0150984_114703103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	765	Open in IMG/M
3300012469\|Ga0150984_118477999	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300012469\|Ga0150984_120924541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1247	Open in IMG/M
3300012924\|Ga0137413_10413376	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300012944\|Ga0137410_11991269	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300012955\|Ga0164298_11242887	Not Available	567	Open in IMG/M
3300013100\|Ga0157373_10667960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	760	Open in IMG/M
3300013296\|Ga0157374_11238971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	768	Open in IMG/M
3300013297\|Ga0157378_11792874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	662	Open in IMG/M
3300013308\|Ga0157375_12602702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	604	Open in IMG/M
3300015064\|Ga0167641_106626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1474	Open in IMG/M
3300015085\|Ga0167632_1012275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1203	Open in IMG/M
3300015161\|Ga0167623_1015423	All Organisms → cellular organisms → Bacteria → Proteobacteria	2097	Open in IMG/M
3300015171\|Ga0167648_1104068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	564	Open in IMG/M
3300017792\|Ga0163161_10680013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	855	Open in IMG/M
3300018422\|Ga0190265_10769791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1085	Open in IMG/M
3300018431\|Ga0066655_10566041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	761	Open in IMG/M
3300018432\|Ga0190275_10000592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	30469	Open in IMG/M
3300018469\|Ga0190270_12237678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	607	Open in IMG/M
3300018476\|Ga0190274_10327544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1442	Open in IMG/M
3300019263\|Ga0184647_1278407	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300019269\|Ga0184644_1709543	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300019279\|Ga0184642_1591376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	850	Open in IMG/M
3300020034\|Ga0193753_10243443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	802	Open in IMG/M
3300020059\|Ga0193745_1000002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	637768	Open in IMG/M
3300020070\|Ga0206356_10809954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1352	Open in IMG/M
3300021384\|Ga0213876_10025229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3137	Open in IMG/M
3300021953\|Ga0213880_10002595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3028	Open in IMG/M
3300025911\|Ga0207654_11179400	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300025920\|Ga0207649_10544819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	887	Open in IMG/M
3300025924\|Ga0207694_10062831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2892	Open in IMG/M
3300025927\|Ga0207687_10900304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	757	Open in IMG/M
3300025931\|Ga0207644_10556580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. SCG-1	950	Open in IMG/M
3300025931\|Ga0207644_10907231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	739	Open in IMG/M
3300025935\|Ga0207709_11262555	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300025944\|Ga0207661_10780010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. SCG-1	880	Open in IMG/M
3300025945\|Ga0207679_12146904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	507	Open in IMG/M
3300025949\|Ga0207667_12051407	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300025981\|Ga0207640_10857410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	791	Open in IMG/M
3300025981\|Ga0207640_11906077	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300025986\|Ga0207658_11450462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	628	Open in IMG/M
3300026023\|Ga0207677_11901011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	553	Open in IMG/M
3300026035\|Ga0207703_12285926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. SCG-1	516	Open in IMG/M
3300026088\|Ga0207641_10023444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	5085	Open in IMG/M
3300026089\|Ga0207648_10970256	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300028379\|Ga0268266_10000103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	179736	Open in IMG/M
3300028790\|Ga0307283_10137616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	666	Open in IMG/M
3300030988\|Ga0308183_1032134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	968	Open in IMG/M
3300031824\|Ga0307413_10078746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2104	Open in IMG/M
3300031824\|Ga0307413_10456345	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300031824\|Ga0307413_10675684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	855	Open in IMG/M
3300032004\|Ga0307414_10254424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1462	Open in IMG/M
3300032004\|Ga0307414_10629259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	965	Open in IMG/M
3300032004\|Ga0307414_11225518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. SCG-1	695	Open in IMG/M
3300032126\|Ga0307415_101181741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. SCG-1	720	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	64.49%
Environmental	Environmental	35.51%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	64.49%
Terrestrial	Environmental → Terrestrial	32.71%
Aquatic	Environmental → Aquatic	2.80%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	42.99%
Soil	Environmental → Terrestrial → Soil	31.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.69%
Freshwater	Environmental → Aquatic → Freshwater	2.80%
Roots	Host-Associated → Plants → Roots	2.80%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	24.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	23.36%
Soil	Host-Associated → Plants → Rhizosphere → Soil	19.63%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.02%
Loam	Environmental → Terrestrial → Soil → Loam	7.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.67%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.80%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.93%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	23.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	19.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.41%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	6.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	6.54%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	6.54%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	5.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.74%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.74%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300001989	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011241	Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 11 - S13.2.50.a - transect 2, age 50 years, surface depth).	Environmental	Open in IMG/M
3300011244	Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 18 - S13.2.60.3.a - transect 2, repeat 3, age 113 years, surface depth)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015064	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7B, Adjacent to main proglacial river, mid transect (Watson river))	Environmental	Open in IMG/M
3300015085	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4B, Ice margin, adjacent to proglacial lake)	Environmental	Open in IMG/M
3300015161	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1B, Ice margin)	Environmental	Open in IMG/M
3300015171	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3a, vegetated patch on medial moraine)	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_06888940	2170459003	Grass Soil	MKLHNIGSKRPKLYPPKALLAAGPIERRSPTLSGFELRHIVTEMLG
deeps_02998360	2199352024	Soil	MNLQTIGSTRPKLYPPKALLSMGPMERRSPTLSAFELRLIVTEVIG
JGI24739J22299_101751092	3300001989	Corn Rhizosphere	MKLSNPGSKRPKLFPPKALLADGPSERRSPTLSGFELRNVVTEMLG*
C688J35102_1209601344	3300002568	Soil	MNIQILGSKRPKLWPPKALLSGAPIEARFPTLSGTELRRIVTEVLG*
Ga0070683_1003323602	3300005329	Corn Rhizosphere	MNVQNIGSKRPKLYPPKALLAAGPIERRSPTLSGFELRHIVTELLG*
Ga0070670_1003397935	3300005331	Switchgrass Rhizosphere	MNVQMTGSKRPKLYPPKALLAAGPIERRSPTLSGLELRHIVTEM
Ga0068869_1005646783	3300005334	Miscanthus Rhizosphere	MNVHMTGSKRPKLYPPKALLAAGPIERRSPTLSGFELRHIVTEMLG*
Ga0068868_1015887332	3300005338	Miscanthus Rhizosphere	MNVQNIGSKRPKLYPPKALLAAEPIERRSPTLSGFELRHIVTEMLG*
Ga0070660_1014193112	3300005339	Corn Rhizosphere	MNVHTIGSKRPKLYPPKALLAGGPGERRSPTLSGFELRNIVTEMLG*
Ga0070687_1009791372	3300005343	Switchgrass Rhizosphere	MNLQTMGPKRPKLYPPKALLAAGPIERRSPTLSGFELRNIVTEMLG*
Ga0070671_1003347533	3300005355	Switchgrass Rhizosphere	MNVHMTGSKRPKLYPPKALLAAGPIGRRSPTLSGFELRNIVTEMLG*
Ga0070674_1020477032	3300005356	Miscanthus Rhizosphere	MNVQMTGSKRPKLYPPKALLAAGPIERRSPTLSGLELRHIVTEMLG*
Ga0070673_1017197632	3300005364	Switchgrass Rhizosphere	MNVQMNGSKRPKLYPPKALLAAGPMPDRSPTLSGFELRKIVTEMLG*
Ga0070662_1013713282	3300005457	Corn Rhizosphere	MNIEMNGSKRPKLYPPKALLAAGPIERRSPTLSGFELRNIVTEMLG*
Ga0068867_1009486873	3300005459	Miscanthus Rhizosphere	MNVHTIGSKRPKLYLPKALLAAGPIERRSPTLSGLELRHIVTEMLG
Ga0070684_1003346225	3300005535	Corn Rhizosphere	MNVEHQGPKRPRLYLPKALLAAGPSQRRSPTLSVLELRAAVTEMVG*
Ga0070684_1007541152	3300005535	Corn Rhizosphere	MNTGNPGPKRPKLYPPKALLAAGPTERRSPILSSFELRNIVTELLG*
Ga0068853_1018966341	3300005539	Corn Rhizosphere	MKLSNPGSKRPKLYPPKALLAAGPSERRSPTLSGFELRNVVTEMLG*
Ga0070686_10000018615	3300005544	Switchgrass Rhizosphere	MNVQNIGSKRPKLYPPKALLAAGPMPDRSPTLSGFELRKIVTEMLG*
Ga0070686_1018348681	3300005544	Switchgrass Rhizosphere	MNVHMTGSKRPKLYPPKALLAAGPIERRSPTLSGFELRNIVTEMLG*
Ga0070665_10000033471	3300005548	Switchgrass Rhizosphere	MNVHMIGSKRPKLYPPKALLAAGPIERRSPTLSGFELRNIVTEMLG*
Ga0070664_1011407262	3300005564	Corn Rhizosphere	MNVHTIGSKRPKLYPPKALLAAGPIERRSPTLSGFELRHIVTELLG*
Ga0068854_1003655813	3300005578	Corn Rhizosphere	MNIQTNGSMRPKLYPPKALLAAGTTERRPPILSGFELRKIVTEMLG*
Ga0066654_102405903	3300005587	Soil	MNGSKRPKLYPPKALLAAGTIERRPPILSGFELRKIVTETLG*
Ga0068858_1010826143	3300005842	Switchgrass Rhizosphere	MNVHMTGSKRPKLYPPKALLAAGPGERRSPTLSGFELRHIVTEMLG*
Ga0075362_106984332	3300006177	Populus Endosphere	MNVQMTGSKRPKLYPPKALLAAGPIERRSPTLSGFELRHIVTEMLG*
Ga0097621_1018097292	3300006237	Miscanthus Rhizosphere	MNLQNEGSKRPKLYPPKALLAAGPIERRSPTLSGLELRHIVTEMLG*
Ga0075425_1028885442	3300006854	Populus Rhizosphere	MKLPNIGPQRPKLYPPKALLAAGPIERRSPTLSGFELRLIVTEMLG*
Ga0075434_1003032903	3300006871	Populus Rhizosphere	MKLANIGPQRPKLYPPKALLAAGPIERRSPTLSGFELRLIVTEMLG*
Ga0105240_114462452	3300009093	Corn Rhizosphere	MNTGNPGPQRPKLYPPKALLAAGPTERRSPILSSFELRNIVTELLG*
Ga0105245_114675072	3300009098	Miscanthus Rhizosphere	MNVHTDGSKRPKLYPPKALLAAGPIERRSPTLSGFELRHIVTEMLG*
Ga0105245_121082423	3300009098	Miscanthus Rhizosphere	MNVHTIGSKRPKLYLPKALLAAGPIERRSPTLSGL
Ga0105245_122098711	3300009098	Miscanthus Rhizosphere	KRPKLYPPKALLAAEPIERRSPTLSGFELRHIVTEMLG*
Ga0105241_115708582	3300009174	Corn Rhizosphere	MNVHTIGSKRPKLYPPKALLAAGPIERRSPTLSGLELRHIVTEMLG*
Ga0105237_114959001	3300009545	Corn Rhizosphere	MNVHTIGSKRPKLYLPKALLAAGPIERRSPTLSGLELRHIVTEML
Ga0105238_115088103	3300009551	Corn Rhizosphere	MNVHTIGSKRPKLYLPKALLAAGPIERRSPTLSGFELRHIVTEMLG*
Ga0105238_122770381	3300009551	Corn Rhizosphere	MNVNYVGSKRPKLYPPKALLAVGPSQRRSPTLSSLELRNIVTEMLG*
Ga0134124_121334671	3300010397	Terrestrial Soil	MNINMTGPQRPKLYPPKALLAAGPERRSPTLSGLELRKIVTELLG*
Ga0134124_130323921	3300010397	Terrestrial Soil	RNEMNVQMNGSKRPKLYPPKALLAAGPGERRSPTLSGPELRHIVTEMLG*
Ga0134122_103353953	3300010400	Terrestrial Soil	MPGSKRPKLYPPKALLGAGPIERRSPTLSGFELRNIVTEMLG*
Ga0134121_105844843	3300010401	Terrestrial Soil	MTGSKRPKLYPPKALLAAGPIGRRSPTLSGFELRNIVTE
Ga0137476_1068032	3300011241	Glacier Forefield Soil	MNLQNIGSTRPKLYPPKALLSMGPMERRSPNLSDAELRYIVIQVIG*
Ga0137483_1015462	3300011244	Glacier Forefield Soil	MNLQISGSTRPKLYPPKALLSIGPGERRSPILSGTELRRVVTEVIG*
Ga0150985_1039164202	3300012212	Avena Fatua Rhizosphere	MNISTIGSKRPKLYPPKALLAAGPGERRSPTLSGFELRHIVTEMLG*
Ga0150985_1141535793	3300012212	Avena Fatua Rhizosphere	MNVQMTGSKRPKLSPPKALLAAGPIERRSPTLSGFELRNIVTEMLG*
Ga0150985_1154556132	3300012212	Avena Fatua Rhizosphere	MNISTIGSKRPKLYPPKALLAAGPGERRSPTLSSFELRMIVTELLG*
Ga0150985_1168040421	3300012212	Avena Fatua Rhizosphere	MNVQTTGSKRPKLYPPKALLAAGPIERRSPTLSGLEL
Ga0150985_1227392562	3300012212	Avena Fatua Rhizosphere	MIGSKRPKLYPPKALLAAGAIERRSPTLSGIELRHIVTEMLG*
Ga0150984_1000781741	3300012469	Avena Fatua Rhizosphere	MNVHNIGSKRPKLYPPKALLAAGPSERRSPTLSGFELRNIVTEMLG*
Ga0150984_1027838431	3300012469	Avena Fatua Rhizosphere	MNVQMTGSKRPKLYPPKALLAAGPIERRSPTLSGLELRHI
Ga0150984_1039488012	3300012469	Avena Fatua Rhizosphere	MKLPNIGSTRPKLYPPKALLAAGPGERRSPTLSGFELRNIVTEMLG*
Ga0150984_1113559773	3300012469	Avena Fatua Rhizosphere	MNISTIGSKRPKLYPPKALLAAGPGERRSPTLSGFELRHIVTEMLG
Ga0150984_1147031031	3300012469	Avena Fatua Rhizosphere	MNVQTTGSKRPKLYPPKALLAAGPIERRSPTLSGLELRHIVTE
Ga0150984_1184779992	3300012469	Avena Fatua Rhizosphere	MTGSKRPKLSPPKALLAAGPIERRSPTLSGLELRHIVTEMLG*
Ga0150984_1209245413	3300012469	Avena Fatua Rhizosphere	MIGSKRPKLYPPKALLAAGGIERRSPTLSGIELRHIVTEMLG*
Ga0137413_104133763	3300012924	Vadose Zone Soil	MNVHNTGSKRPKLYPPKALLAAGPIERRSPTLSGFELRHIVTEMLG*
Ga0137410_119912692	3300012944	Vadose Zone Soil	MTGSKRPKLSPPKALLAAGPIERRSPTLSGFELRNIVTEMLG*
Ga0164298_112428872	3300012955	Soil	MNVHTIGSKRPKLYLPKALLAAGPIERRSPTLAGFELRHIVTEMLG*
Ga0157373_106679602	3300013100	Corn Rhizosphere	MNIQTNGSMRPKLYPPKALLAAGTIERRPPILSGFELRKIVTEMLG*
Ga0157374_112389712	3300013296	Miscanthus Rhizosphere	MNVHTIGSKRPKLYLPKALLAAGPIERRSPTLSGLELRHIVTEMLG*
Ga0157378_117928742	3300013297	Miscanthus Rhizosphere	MNVHTDGSKRPKLYPPKALLAAEPIERRSPTLSGFELRHIVTEMLG*
Ga0157375_126027022	3300013308	Miscanthus Rhizosphere	MGSTRPKLWPPKALLASGPGDRRSPTLSGTELRRIVTEVLG*
Ga0167641_1066263	3300015064	Glacier Forefield Soil	MNTQIMGSTRPKLWPPKALQASGPGDRRSPTLSGTELRRIVTEVLG*
Ga0167632_10122753	3300015085	Glacier Forefield Soil	MNTQMTGSTRPKLYPPKALLSIGPIERRSPILSGTELRRIVTEVIG*
Ga0167623_10154234	3300015161	Glacier Forefield Soil	MNLQIIGSTRPKLYPPKALLSMGPMERRSPTLSGPELRHIVTQVIG*
Ga0167648_11040683	3300015171	Glacier Forefield Soil	MNLQTIGSTRPKLYPPKALLSMGPMERRSPTLSAFELRLIVTEVIG*
Ga0163161_106800131	3300017792	Switchgrass Rhizosphere	MNIHTDGSKRPKLYPPKALLAAGPGERRSPTLSGFELRHIVTEMLG
Ga0190265_107697911	3300018422	Soil	MNLQITGSKRPKLHLPKALLSSGSGDRRSPLLSGTELRRIVTQVIG
Ga0066655_105660412	3300018431	Grasslands Soil	MNTNMTGSKRPKLYLPKALLAAGMSERRAPILSRPELRTIVIELLG
Ga0190275_100005929	3300018432	Soil	MNLLTIGSTRPKLYPPKALLSMGPTERRSPNLSGTELRRIVTQVIG
Ga0190270_122376782	3300018469	Soil	MNVHIAGSKRPKLYPPKALLACGPTERRSPTLSGFELRHIVTEMLG
Ga0190274_103275442	3300018476	Soil	MNVHITGSKRPKLYPPKALLACGPIERRSPTLSGFELRHIVTEMLG
Ga0184647_12784071	3300019263	Groundwater Sediment	MNIHMTGSKRPKLYPPKALLAAGPIERRSPTLSGFELRNIVTEMLG
Ga0184644_17095433	3300019269	Groundwater Sediment	MNVHMTGSKRPKLYPPKALLAAGPIERRSPTLSGFELRNIVTEMLG
Ga0184642_15913763	3300019279	Groundwater Sediment	MNVHMTGSKRPKLYPPKALLAAGPIERRSPTLSGFELRHIVTEMLG
Ga0193753_102434431	3300020034	Soil	MNVHMIGSKRPKLYPPKALLAAGPIERRSPTLSGFELRHIVTEMLG
Ga0193745_1000002250	3300020059	Soil	MNTQIMGSTRPKLWPPKALLASGPGDRRSPTLSGTELRRIVTEVLG
Ga0206356_108099543	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MNTGNPGPQRPKLYPPKALLAAGPTERRSPILSSFELRNIVTELLG
Ga0213876_100252295	3300021384	Plant Roots	MNVEHQGPKRPRLYLPKALLAAGPAPCRSPTLSTLELRAAVTEMVG
Ga0213880_100025951	3300021953	Exposed Rock	MNIGHPGPKRPKLYPPKALLAAGPSERRSPILSSFELRNIVTELLG
Ga0207654_111794003	3300025911	Corn Rhizosphere	MNTGNPGPKRPKLYPPKALLAAGPTERRSPILSSFELRNIVTELLG
Ga0207649_105448191	3300025920	Corn Rhizosphere	MNVQTNGSKRPKLFLPKALLAAGPSDRRSPTLSGFELRNIVTEMLG
Ga0207694_100628313	3300025924	Corn Rhizosphere	MNTGNPGPQRPKLYPPKALLAAGPTERRSPILSSFELRNIVTESLG
Ga0207687_109003042	3300025927	Miscanthus Rhizosphere	MNVHTDGSKRPKLYPPKALLAAGPIERRSPTLSGFELRHIVTEMLG
Ga0207644_105565801	3300025931	Switchgrass Rhizosphere	SKRPKLYPPKALLAAGPGERRSPTLSGFELRHIVTEMLG
Ga0207644_109072311	3300025931	Switchgrass Rhizosphere	MNVHMTGSKRPKLYPPKALLAAGPGERRSPTLSGFELRHIVTEMLG
Ga0207709_112625551	3300025935	Miscanthus Rhizosphere	MNVQNIGSKRPKLYPPKALLAAGPMPDRSPTLSGFELRKIVTEMLG
Ga0207661_107800101	3300025944	Corn Rhizosphere	QITRRGVPPRTEMNVQNIGSKRPKLYPPKALLAAGPIERRSPTLSGFELRHIVTELLG
Ga0207679_121469042	3300025945	Corn Rhizosphere	MNVHTIGSKRPKLYPPKALLAAGPIERRSPTLSGFELRHIVTELLG
Ga0207667_120514072	3300025949	Corn Rhizosphere	MNVHTIGSKRPKLYLPKALLAAGPIERRSPTLSGLE
Ga0207640_108574102	3300025981	Corn Rhizosphere	MNIQTNGSMRPKLYPPKALLAAGTTERRPPILSGFELRKIVTEMLG
Ga0207640_119060771	3300025981	Corn Rhizosphere	MNTQIIGSTRPKLYPPKALLSIWPEQRRSPLLSGTELR
Ga0207658_114504622	3300025986	Switchgrass Rhizosphere	MNVHTIGSKRPKLYPPKALLAAEPIERRSPTLSGFELRHIVTEMLG
Ga0207677_119010112	3300026023	Miscanthus Rhizosphere	MNVQNIGSKRPKLYPPKALLAAEPIERRSPTLSGFELRHIVTEMLG
Ga0207703_122859262	3300026035	Switchgrass Rhizosphere	MNVHTIGSKRPKLYLPKALLAAGPIERRSPTLSGFELRHIVTEMLG
Ga0207641_100234445	3300026088	Switchgrass Rhizosphere	MNVHMTGSKRPKLYPPKALLAAGPIGRRSPTLSGFELRNIVTEMLG
Ga0207648_109702562	3300026089	Miscanthus Rhizosphere	MNVQNIGSKRPKLYPPKALLAAGPIERRSPTLSGLELRHIVTEMLG
Ga0268266_1000010344	3300028379	Switchgrass Rhizosphere	MNVHMIGSKRPKLYPPKALLAAGPIERRSPTLSGFELRNIVTEMLG
Ga0307283_101376163	3300028790	Soil	PPRIKMNVHSEGSKRPKLYPPKALLAAGPGERRSPTLSGFELRHIVTEMLG
Ga0308183_10321343	3300030988	Soil	MNVHSEGSKRPKLYPPKALLAAGPGERRSPTLSGFELRHIVTEMLG
Ga0307413_100787464	3300031824	Rhizosphere	MNIETIGSTRPKLHLPKALLSDGSGERRAPTLSSFELRRIVAELLG
Ga0307413_104563451	3300031824	Rhizosphere	MKRRRFPPESEMNIETIGSTRPKLYLPKALLSERSGERRVPTLSSFELKRIVAELLG
Ga0307413_106756843	3300031824	Rhizosphere	MMRRIFPPESEMNIETIGSARPKLYLPKALLSERSSESRLATLSSFELRRIVAELLG
Ga0307414_102544245	3300032004	Rhizosphere	MKRRRFPPENEMNIETIGSTRPKLFLPKALLSERPSERRVPTLSSFELRRIVAELLG
Ga0307414_106292593	3300032004	Rhizosphere	MKRRKIPPESEMNIETIGSTRPKLHLPKALLSDGSGERRAPTLSSFELRRIVAELLG
Ga0307414_112255182	3300032004	Rhizosphere	RRRSPPESKMNIETIGSTRPKLYLPKALLSERSGERRVPTLSSFELKRIVAELLG
Ga0307415_1011817411	3300032126	Rhizosphere	PPESKMNIETIGSTRPKLYLPKALLSERSGERRVPTLSSFELKRIVAELLG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092375

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences