NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F045796

Metagenome / Metatranscriptome Family F045796

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F045796
Family Type Metagenome / Metatranscriptome
Number of Sequences 152
Average Sequence Length 36 residues
Representative Sequence MTLSYNSLQSLALSLVGALVASSLFLSAAVGPVPVI
Number of Associated Samples 112
Number of Associated Scaffolds 152

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 92.72 %
% of genes near scaffold ends (potentially truncated) 7.24 %
% of genes from short scaffolds (< 2000 bps) 74.34 %
Associated GOLD sequencing projects 106
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (58.553 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(28.947 % of family members)
Environment Ontology (ENVO) Unclassified
(44.737 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(53.947 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: Yes Secondary Structure distribution: α-helix: 40.62%    β-sheet: 0.00%    Coil/Unstructured: 59.38%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 152 Family Scaffolds
PF04024PspC 48.03
PF13561adh_short_C2 5.26
PF00375SDF 3.95
PF11026DUF2721 3.29
PF13545HTH_Crp_2 2.63
PF07715Plug 1.97
PF01274Malate_synthase 1.97
PF09836DUF2063 1.32
PF09411PagL 1.32
PF06127Mpo1-like 1.32
PF00578AhpC-TSA 1.32
PF07896DUF1674 0.66
PF06242TrcR 0.66
PF00345PapD_N 0.66
PF00144Beta-lactamase 0.66
PF06348DUF1059 0.66
PF01755Glyco_transf_25 0.66
PF14219DUF4328 0.66
PF05114DUF692 0.66
PF09966DUF2200 0.66
PF13520AA_permease_2 0.66
PF12760Zn_Tnp_IS1595 0.66
PF12697Abhydrolase_6 0.66
PF05960DUF885 0.66
PF08309LVIVD 0.66
PF00271Helicase_C 0.66
PF02586SRAP 0.66
PF03544TonB_C 0.66
PF00194Carb_anhydrase 0.66
PF01189Methyltr_RsmB-F 0.66
PF07681DoxX 0.66
PF12902Ferritin-like 0.66
PF13439Glyco_transf_4 0.66
PF07498Rho_N 0.66
PF04055Radical_SAM 0.66
PF06736TMEM175 0.66
PF06841Phage_T4_gp19 0.66

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 152 Family Scaffolds
COG2225Malate synthaseEnergy production and conversion [C] 1.97
COG45392-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids)Lipid transport and metabolism [I] 1.32
COG3121P pilus assembly protein, chaperone PapDExtracellular structures [W] 1.32
COG3220Uncharacterized conserved protein, UPF0276 familyFunction unknown [S] 0.66
COG5508Uncharacterized conserved protein, DUF1674 domainFunction unknown [S] 0.66
COG5276Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domainFunction unknown [S] 0.66
COG4805Uncharacterized conserved protein, DUF885 familyFunction unknown [S] 0.66
COG4270Uncharacterized membrane proteinFunction unknown [S] 0.66
COG3820Cell cycle regulator TrcR, DUF1013 familyTranscription [K] 0.66
COG3548Uncharacterized membrane proteinFunction unknown [S] 0.66
COG3338Carbonic anhydraseInorganic ion transport and metabolism [P] 0.66
COG3306Glycosyltransferase involved in LPS biosynthesis, GR25 familyCell wall/membrane/envelope biogenesis [M] 0.66
COG014416S rRNA C967 or C1407 C5-methylase, RsmB/RsmF familyTranslation, ribosomal structure and biogenesis [J] 0.66
COG2367Beta-lactamase class ADefense mechanisms [V] 0.66
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 0.66
COG2135ssDNA abasic site-binding protein YedK/HMCES, SRAP familyReplication, recombination and repair [L] 0.66
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 0.66
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 0.66
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 0.66


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms58.55 %
UnclassifiedrootN/A41.45 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001686|C688J18823_10203653Not Available1333Open in IMG/M
3300001989|JGI24739J22299_10058130All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1229Open in IMG/M
3300002184|JGI24770J26754_10018689All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3731Open in IMG/M
3300005334|Ga0068869_101045272All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales713Open in IMG/M
3300005355|Ga0070671_100938020Not Available757Open in IMG/M
3300005543|Ga0070672_100552863Not Available1000Open in IMG/M
3300005548|Ga0070665_100000317All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas74997Open in IMG/M
3300005564|Ga0070664_101960253All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas556Open in IMG/M
3300005719|Ga0068861_102095380All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas565Open in IMG/M
3300005843|Ga0068860_100504023All Organisms → cellular organisms → Bacteria1209Open in IMG/M
3300006031|Ga0066651_10001442All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas8170Open in IMG/M
3300006353|Ga0075370_10377661Not Available849Open in IMG/M
3300006871|Ga0075434_100265297All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1736Open in IMG/M
3300007004|Ga0079218_13319789Not Available545Open in IMG/M
3300009078|Ga0105106_11331930Not Available509Open in IMG/M
3300009094|Ga0111539_11554347Not Available767Open in IMG/M
3300009094|Ga0111539_11705907All Organisms → cellular organisms → Bacteria → Proteobacteria730Open in IMG/M
3300009098|Ga0105245_10067230All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae3245Open in IMG/M
3300009098|Ga0105245_10625604All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1105Open in IMG/M
3300009098|Ga0105245_12052808Not Available625Open in IMG/M
3300009148|Ga0105243_10514201Not Available1137Open in IMG/M
3300009176|Ga0105242_11759605Not Available657Open in IMG/M
3300009553|Ga0105249_12150032Not Available631Open in IMG/M
3300010051|Ga0133939_1041623All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae8095Open in IMG/M
3300010333|Ga0134080_10510298Not Available573Open in IMG/M
3300010371|Ga0134125_12728627Not Available537Open in IMG/M
3300010399|Ga0134127_12038818Not Available652Open in IMG/M
3300010399|Ga0134127_12955294Not Available554Open in IMG/M
3300010400|Ga0134122_11685636Not Available661Open in IMG/M
3300010400|Ga0134122_12033518Not Available614Open in IMG/M
3300010401|Ga0134121_10556797All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → unclassified Sphingomonadaceae → Sphingomonadaceae bacterium1066Open in IMG/M
3300010874|Ga0136264_10367729Not Available524Open in IMG/M
3300011119|Ga0105246_10501011All Organisms → cellular organisms → Bacteria1031Open in IMG/M
3300011196|Ga0137482_100334All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria8007Open in IMG/M
3300011198|Ga0137472_100753All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1949Open in IMG/M
3300011244|Ga0137483_102524Not Available2103Open in IMG/M
3300011443|Ga0137457_1104495Not Available903Open in IMG/M
3300012208|Ga0137376_11377484Not Available596Open in IMG/M
3300012212|Ga0150985_104776044Not Available591Open in IMG/M
3300012212|Ga0150985_120476194Not Available926Open in IMG/M
3300012668|Ga0157216_10009848All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria5237Open in IMG/M
3300012892|Ga0157294_10226827Not Available563Open in IMG/M
3300012943|Ga0164241_10189984All Organisms → cellular organisms → Bacteria1469Open in IMG/M
3300012958|Ga0164299_11178093Not Available578Open in IMG/M
3300012989|Ga0164305_10480706Not Available972Open in IMG/M
3300013297|Ga0157378_12745934Not Available545Open in IMG/M
3300013308|Ga0157375_11248358Not Available872Open in IMG/M
3300014325|Ga0163163_11810342Not Available671Open in IMG/M
3300014325|Ga0163163_11858845Not Available662Open in IMG/M
3300014326|Ga0157380_10958063All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales886Open in IMG/M
3300014969|Ga0157376_11637636Not Available678Open in IMG/M
3300015064|Ga0167641_109216All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1172Open in IMG/M
3300015067|Ga0167640_109719All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales907Open in IMG/M
3300015069|Ga0167633_100120All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas37799Open in IMG/M
3300015161|Ga0167623_1055993All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas750Open in IMG/M
3300015168|Ga0167631_1029217All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales885Open in IMG/M
3300015189|Ga0167667_1005627All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas3983Open in IMG/M
3300015371|Ga0132258_10731565All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae2492Open in IMG/M
3300015371|Ga0132258_11489292All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1709Open in IMG/M
3300015374|Ga0132255_102868047All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales737Open in IMG/M
3300017792|Ga0163161_10937366All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella → unclassified Sphingosinicella → Sphingosinicella sp. CPCC 101087736Open in IMG/M
3300017965|Ga0190266_10000528All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas6384Open in IMG/M
3300018422|Ga0190265_10000200All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas56003Open in IMG/M
3300018422|Ga0190265_10001317All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae16197Open in IMG/M
3300018422|Ga0190265_10002832All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas11721Open in IMG/M
3300018422|Ga0190265_10056931All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas3449Open in IMG/M
3300018422|Ga0190265_10098595All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae2731Open in IMG/M
3300018422|Ga0190265_10233622All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1875Open in IMG/M
3300018422|Ga0190265_10580425Not Available1239Open in IMG/M
3300018422|Ga0190265_10666633Not Available1161Open in IMG/M
3300018422|Ga0190265_10776296All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1081Open in IMG/M
3300018422|Ga0190265_10822855All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1051Open in IMG/M
3300018422|Ga0190265_10866254All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1026Open in IMG/M
3300018429|Ga0190272_10060934All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2238Open in IMG/M
3300018429|Ga0190272_10213273All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1409Open in IMG/M
3300018429|Ga0190272_10227313All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → Novosphingobium resinovorum1377Open in IMG/M
3300018429|Ga0190272_10448557All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1074Open in IMG/M
3300018429|Ga0190272_10738823All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium894Open in IMG/M
3300018429|Ga0190272_10996148Not Available799Open in IMG/M
3300018429|Ga0190272_11581223Not Available671Open in IMG/M
3300018429|Ga0190272_11927628All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria622Open in IMG/M
3300018432|Ga0190275_10000015All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas287251Open in IMG/M
3300018432|Ga0190275_10000352All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas43086Open in IMG/M
3300018465|Ga0190269_10156769All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → unclassified Sphingomonadaceae → Sphingomonadaceae bacterium1185Open in IMG/M
3300018469|Ga0190270_12084085Not Available626Open in IMG/M
3300018476|Ga0190274_10000220All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria38564Open in IMG/M
3300018476|Ga0190274_10642989All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella1095Open in IMG/M
3300018476|Ga0190274_11663386Not Available732Open in IMG/M
3300018481|Ga0190271_11357511Not Available830Open in IMG/M
3300018920|Ga0190273_11822555Not Available555Open in IMG/M
3300019208|Ga0180110_1097874Not Available573Open in IMG/M
3300019360|Ga0187894_10000007All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae405218Open in IMG/M
3300019360|Ga0187894_10000398All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas58544Open in IMG/M
3300019361|Ga0173482_10442771Not Available615Open in IMG/M
3300019377|Ga0190264_10093047Not Available1387Open in IMG/M
3300020027|Ga0193752_1011699All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas4565Open in IMG/M
3300020027|Ga0193752_1122379All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella → unclassified Sphingosinicella → Sphingosinicella sp. CPCC 1010871044Open in IMG/M
3300020027|Ga0193752_1182875Not Available806Open in IMG/M
3300020034|Ga0193753_10162578Not Available1053Open in IMG/M
3300020059|Ga0193745_1000005All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas267691Open in IMG/M
3300020202|Ga0196964_10102525All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella1261Open in IMG/M
3300021061|Ga0196973_1056756Not Available753Open in IMG/M
3300021067|Ga0196978_1001856All Organisms → cellular organisms → Bacteria → Proteobacteria8562Open in IMG/M
3300021339|Ga0193706_1129971Not Available686Open in IMG/M
3300025315|Ga0207697_10227427All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Parasphingorhabdus → Parasphingorhabdus marina → Parasphingorhabdus marina DSM 22363823Open in IMG/M
3300025893|Ga0207682_10000998All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria13085Open in IMG/M
3300025893|Ga0207682_10162785All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. ERG51012Open in IMG/M
3300025901|Ga0207688_10294403All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae991Open in IMG/M
3300025903|Ga0207680_11050578Not Available583Open in IMG/M
3300025907|Ga0207645_10465205Not Available854Open in IMG/M
3300025923|Ga0207681_10318946All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1235Open in IMG/M
3300025923|Ga0207681_10749774All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella → unclassified Sphingosinicella → Sphingosinicella sp. CPCC 101087814Open in IMG/M
3300025926|Ga0207659_11010523Not Available716Open in IMG/M
3300025927|Ga0207687_11226419Not Available645Open in IMG/M
3300025930|Ga0207701_11284902Not Available600Open in IMG/M
3300025935|Ga0207709_10273256All Organisms → cellular organisms → Bacteria1245Open in IMG/M
3300025941|Ga0207711_10491035Not Available1144Open in IMG/M
3300025942|Ga0207689_10172844All Organisms → cellular organisms → Bacteria1781Open in IMG/M
3300025960|Ga0207651_10329514All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → Novosphingobium resinovorum1279Open in IMG/M
3300025972|Ga0207668_10154125All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1783Open in IMG/M
3300026306|Ga0209468_1005306All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria5044Open in IMG/M
3300027907|Ga0207428_11211571All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria525Open in IMG/M
3300028379|Ga0268266_10000388All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas66871Open in IMG/M
3300028380|Ga0268265_10390155All Organisms → cellular organisms → Bacteria1284Open in IMG/M
3300028578|Ga0272482_10013960Not Available2010Open in IMG/M
3300028578|Ga0272482_10077602All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria913Open in IMG/M
3300028590|Ga0247823_10627082All Organisms → cellular organisms → Bacteria809Open in IMG/M
3300028596|Ga0247821_10310706Not Available963Open in IMG/M
3300028802|Ga0307503_10000015All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas206343Open in IMG/M
3300031228|Ga0299914_10522675Not Available1023Open in IMG/M
3300031229|Ga0299913_10003962All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas12317Open in IMG/M
3300031455|Ga0307505_10030563All Organisms → cellular organisms → Bacteria → Proteobacteria2438Open in IMG/M
3300031455|Ga0307505_10346443Not Available701Open in IMG/M
3300031456|Ga0307513_10167417All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2080Open in IMG/M
3300031456|Ga0307513_10484052Not Available957Open in IMG/M
3300031548|Ga0307408_100717779Not Available900Open in IMG/M
3300031824|Ga0307413_10059868All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2342Open in IMG/M
3300032004|Ga0307414_10371081All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1234Open in IMG/M
3300032004|Ga0307414_10979810All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales778Open in IMG/M
3300032005|Ga0307411_10741283All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales860Open in IMG/M
3300032075|Ga0310890_11386658Not Available577Open in IMG/M
3300032205|Ga0307472_100334547All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1235Open in IMG/M
3300032896|Ga0335075_10000067All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas215320Open in IMG/M
3300032896|Ga0335075_10723177All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas952Open in IMG/M
3300034006|Ga0334934_006018All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1618Open in IMG/M
3300034006|Ga0334934_016257All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1004Open in IMG/M
3300034134|Ga0334928_138934Not Available503Open in IMG/M
3300034169|Ga0370480_0253804Not Available593Open in IMG/M
3300034195|Ga0370501_0386833Not Available511Open in IMG/M
3300034251|Ga0334947_001471All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas6597Open in IMG/M
3300034965|Ga0370497_0000001All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas865326Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil28.95%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil6.58%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere5.92%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere5.26%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.95%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere3.29%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere3.29%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil2.63%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.97%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.97%
SoilEnvironmental → Terrestrial → Soil → Sand → Desert → Soil1.97%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.97%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.97%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.32%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.32%
BiocrustEnvironmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust1.32%
Microbial Mat On RocksEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks1.32%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere1.32%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.32%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.32%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere1.32%
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza1.32%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.32%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.66%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.66%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment0.66%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.66%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.66%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.66%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.66%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.66%
Sub-Biocrust SoilEnvironmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil0.66%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.66%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.66%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.66%
Hypolithic BiocrustEnvironmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust0.66%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.66%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.66%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.66%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.66%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.66%
Industrial WastewaterEngineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Industrial Wastewater0.66%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300001989Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5Host-AssociatedOpen in IMG/M
3300002184Freshwater and sediment microbial communities from Lake Erie, CanadaEnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006353Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009078Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015EnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010051Industrial wastewater microbial communities from reactors of effluent treatment plant in South Killingholme, Immingham, England. Combined Assembly of Gp0151195, Gp0151196EngineeredOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010874Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 3)EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011196Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 17 - S13.2.60.2.a - transect 2, repeat 2, age 113 years, surface depth)EnvironmentalOpen in IMG/M
3300011198Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 7 - S13.1.40.a - transect 1, age 29 years, surface depth)EnvironmentalOpen in IMG/M
3300011244Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 18 - S13.2.60.3.a - transect 2, repeat 3, age 113 years, surface depth)EnvironmentalOpen in IMG/M
3300011443Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2EnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012668Arctic soils microbial communities. Combined Assembly of 23 SPsEnvironmentalOpen in IMG/M
3300012892Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1EnvironmentalOpen in IMG/M
3300012943Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)EnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015064Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7B, Adjacent to main proglacial river, mid transect (Watson river))EnvironmentalOpen in IMG/M
3300015067Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7A, Adjacent to main proglacial river, mid transect (Watson river))EnvironmentalOpen in IMG/M
3300015069Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4C, Ice margin, adjacent to proglacial lakeEnvironmentalOpen in IMG/M
3300015161Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1B, Ice margin)EnvironmentalOpen in IMG/M
3300015168Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)EnvironmentalOpen in IMG/M
3300015189Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb2a, glacial moraine)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300018432Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 TEnvironmentalOpen in IMG/M
3300018465Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 ISEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300018920Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 ISEnvironmentalOpen in IMG/M
3300019208Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT231_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019360White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaGEnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300020027Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1EnvironmentalOpen in IMG/M
3300020034Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2EnvironmentalOpen in IMG/M
3300020059Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2EnvironmentalOpen in IMG/M
3300020202Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10EnvironmentalOpen in IMG/M
3300021061Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5-13CEnvironmentalOpen in IMG/M
3300021067Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13CEnvironmentalOpen in IMG/M
3300021339Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1EnvironmentalOpen in IMG/M
3300025315Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)Host-AssociatedOpen in IMG/M
3300025893Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026306Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028578Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0EnvironmentalOpen in IMG/M
3300028590Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30EnvironmentalOpen in IMG/M
3300028596Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14EnvironmentalOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300031228Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57EnvironmentalOpen in IMG/M
3300031229Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38EnvironmentalOpen in IMG/M
3300031455Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_SEnvironmentalOpen in IMG/M
3300031456Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EMHost-AssociatedOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031824Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2Host-AssociatedOpen in IMG/M
3300032004Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3Host-AssociatedOpen in IMG/M
3300032005Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1Host-AssociatedOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300034006Biocrust microbial communities from Mojave Desert, California, United States - 30SMCEnvironmentalOpen in IMG/M
3300034134Biocrust microbial communities from Mojave Desert, California, United States - 24HNCEnvironmentalOpen in IMG/M
3300034169Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_15EnvironmentalOpen in IMG/M
3300034195Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17EnvironmentalOpen in IMG/M
3300034251Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 43SMSEnvironmentalOpen in IMG/M
3300034965Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_04D_17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
C688J18823_1020365323300001686SoilMSLSIHNIQALALSVIGAVLASSLFLSAAVGPVPVI*
JGI24739J22299_1005813023300001989Corn RhizosphereMTISFNTMQSLAISLVGALVASSLFLSAAVGPVPMI*
JGI24770J26754_1001868953300002184Freshwater And SedimentMTVSYNLQKLALSVFGALVASSLFLAAAVGPVPVI*
Ga0068869_10104527213300005334Miscanthus RhizosphereRYEMTLSLNSLQTLAFSLVGALVASSLFLSAAVGPVPMI*
Ga0070671_10093802013300005355Switchgrass RhizosphereMTYSLNSLQTLAFSLVGALVASSLFLSAAVGPADDLIPLTR
Ga0070672_10055286333300005543Miscanthus RhizosphereMSTYANLYNVAFSIVGALFASTLFISAAVGPVQVI*
Ga0070665_100000317693300005548Switchgrass RhizosphereMSVSFNLQKLALSVFGALVASSLFLTAALGPVPVI*
Ga0070664_10196025323300005564Corn RhizosphereMTLSYNSLQSLALSLVGALVASSLFLSAAVGPVPMI*
Ga0068861_10209538013300005719Switchgrass RhizosphereRRYEMTLSINSLQSLAISLVGALVASSLFLSAAVGPVPVI*
Ga0068860_10050402333300005843Switchgrass RhizosphereMTVSYNLQKLVLSVFGALVASSLFLTAAVGPVPVI*
Ga0066651_1000144213300006031SoilMTLSIHSLQTLAFSLVGALVASSLFLSAAIGPVPVI*
Ga0075370_1037766133300006353Populus EndosphereMTLSLNSLQTLAFSLVGALVASSLFLSAAVGPVPMI*
Ga0075434_10026529713300006871Populus RhizosphereMTLSINSLQTLTISLFGALVASSLFLSAAVGPVPVL*
Ga0079218_1331978923300007004Agricultural SoilMTLSYANLHQIAYSILGALFASSLFISAAVGPVPVI*
Ga0105106_1133193013300009078Freshwater SedimentMSISYANLQSLVVSVIGAVLASSLFISAAGSVPIV*
Ga0111539_1155434723300009094Populus RhizosphereMKMSIYANLYNVAFSIVGALFASTLFISAAVGPVQVI*
Ga0111539_1170590713300009094Populus RhizosphereSDGPVARFRRMKMSISYANLYNVAFSIVGALFASSLFISAAVGPVQII*
Ga0105245_1006723043300009098Miscanthus RhizosphereMSLSINSLQSLAISLVGALVASSLFLSAAVGPVPVI*
Ga0105245_1062560423300009098Miscanthus RhizosphereMTLSLNSLQTLAFSLVGALVASSLFLSAAMGPVQIV*
Ga0105245_1205280823300009098Miscanthus RhizosphereMSLSINSLQSLAISLIGALVASSLFLSAAVGPVPVI*
Ga0105243_1051420113300009148Miscanthus RhizosphereMTLSINSLQSLAISLVGALVASSLFLSAAIGPVPQVL*
Ga0105242_1175960533300009176Miscanthus RhizosphereMTLSINSLQSLALSFVGALVASSLFLSAAVGPVPTII*
Ga0105249_1215003223300009553Switchgrass RhizosphereMKMSISYANLYSVAFSIVGALFASSLFISAAVGPVQII*
Ga0133939_104162393300010051Industrial WastewaterMSVSLPSLQNLTLSVVGAVIASSLFLSAALSSAPIL*
Ga0134080_1051029813300010333Grasslands SoilMTLSLNTLQTLTVSLVGALVASSLFLSAAVGPVPII*
Ga0134125_1272862723300010371Terrestrial SoilMTLSINTMQSLAISLVGALVASSLFLSAAVGPVPAII*
Ga0134127_1203881823300010399Terrestrial SoilMTLSYSNLQSLAVSVVGALLAASLFVSAAVGPVPIV*
Ga0134127_1295529413300010399Terrestrial SoilMTLSINSLQSLAISLVGALVASSLFLSAAVGPVPMI*
Ga0134122_1168563623300010400Terrestrial SoilMSISINSLQSLAISLVGALVASSLFLSAAIGPVPVI*
Ga0134122_1203351833300010400Terrestrial SoilMTLSINTMQSLAISLVGALVASSLFLSAAVGPVPVI*
Ga0134121_1055679723300010401Terrestrial SoilMTLSYSNLQSLAVSVIGAMLAASLFVSAAIGPVPIV*
Ga0136264_1036772923300010874SoilRYQMSLSIQNLQSLAVSLVGAVLVSSLFLSAAMGPVSVI*
Ga0105246_1050101123300011119Miscanthus RhizosphereMTLSLNSLQSLALSFVGALVASSLFLSAAVGPVPMI*
Ga0137482_10033453300011196Glacier Forefield SoilMTLSYSNLQQLAVSLIGAIVASSLFISAAVGPVPIV*
Ga0137472_10075333300011198Glacier Forefield SoilMTLSINLQKLALSVFGALVASSLFISAAVGPVSVI*
Ga0137483_10252433300011244Glacier Forefield SoilMSISLTSLQSLAVSLIGAIVASSLLLSAAMGPVPIV*
Ga0137457_110449523300011443SoilMKMSIYANLYNVAFSIVGALFASSLFISAAVGPVPVI*
Ga0137376_1137748423300012208Vadose Zone SoilMTLSLNSLQTLAFSLVGALVASSLFLSAAMGPVQII*
Ga0150985_10477604433300012212Avena Fatua RhizosphereMTLSLNTLQTLTVSLVGALVASSLFLSAAIGPVPII*
Ga0150985_12047619443300012212Avena Fatua RhizosphereMTLSLNTMQSLALSLVGALVASSLFLSAAMGPVQIV*
Ga0157216_1000984873300012668Glacier Forefield SoilMSLSIHGLQSLAISMIGAVFASSLFLSAALSSAPVI*
Ga0157294_1022682713300012892SoilMTLSYSNLQALTVSVVGALLAASLFVSAAVGPVPIV*
Ga0164241_1018998413300012943SoilMTVSYNLQKLLLSAFGALVASSLFLTAAMGPVPVI*
Ga0164299_1117809313300012958SoilMTLSINTLQTLTVSLVGALVASSLFLSAVIGPVSMV*
Ga0164305_1048070623300012989SoilMTVSYNLQKLALSVFGALVASSLFLTAAVGPVPVI*
Ga0157378_1274593413300013297Miscanthus RhizosphereMSLSINGLQSLAISLIGALVASSLFLSAAVGPVPVI*
Ga0157375_1124835813300013308Miscanthus RhizosphereMTLSLNSLQTLAFSLVGALVASSLFLSAAMGPVQVV*
Ga0163163_1181034213300014325Switchgrass RhizosphereMTLSYNSLQSLALSLVGALVASSLFLSAAVGPVPVI*
Ga0163163_1185884513300014325Switchgrass RhizosphereMTYSLNSLQTLAFSLVGALVASSHFLSAAVGPVPMI*
Ga0157380_1095806313300014326Switchgrass RhizosphereMSITFNLQKLALSVFGALVASSLFLTAAVGPVPVI*
Ga0157376_1163763613300014969Miscanthus RhizosphereSRSRRYEMTLSLNSLQTLAFSLVGALVASSLFLSAAVGPVPMI*
Ga0167641_10921613300015064Glacier Forefield SoilMSLSIHSLQSLAISLVGAIVASSLFLSAAVGPVPVI*
Ga0167640_10971943300015067Glacier Forefield SoilMTLSFNMQKLALSVFGALLASSLFLSAAIGPVPVI*
Ga0167633_100120153300015069Glacier Forefield SoilMTLSFNLQQLAVSVIGALLASSLFISAAIGPVPII*
Ga0167623_105599333300015161Glacier Forefield SoilMSLSIQSLQSLAISLIGAFVASSLFLSAAIGPVPVI*
Ga0167631_102921723300015168Glacier Forefield SoilMTLSFNMQKLALSVFGALVASSLFLSAAIGPVPIA*
Ga0167667_100562743300015189Glacier Forefield SoilMTLSINLQKLTLSVFGALVASSLFISAAVGPVPVI*
Ga0132258_1073156533300015371Arabidopsis RhizosphereMSISIHSLQTMAVSLIGALVASSLFLSAAVGPVPVI*
Ga0132258_1148929233300015371Arabidopsis RhizosphereMSISIHNLQTMAVSLIGALVASSLFLSAAVGPVPVI*
Ga0132255_10286804723300015374Arabidopsis RhizosphereMTLSLNSLQTLAFSLVGALVASSLFLSAAVGPVPII*
Ga0163161_1093736623300017792Switchgrass RhizosphereMTVSYNLQKLVLSVFGALVASSLFLTAAMGPVQVI
Ga0190266_10000528133300017965SoilMTLSIHSLQTMAFSLIGALVASSLFLSAAIGPVPVI
Ga0190265_10000200573300018422SoilMTLSFNIQQLAFSVIGALVASSLFISAAVGPVPVI
Ga0190265_1000131743300018422SoilMTFSYANIQQMALSVIGALVASSLFISAAVGPVPIL
Ga0190265_10002832193300018422SoilMTLSFNSLQQLVVSAIGAVLVSTLFISAAIGPVPIV
Ga0190265_1005693133300018422SoilMTLSFNLQQLAVSVIGALVASSLFISAAVGPVPII
Ga0190265_1009859553300018422SoilMTLNLTSLQQIAFSVVGALFASSLFLTAAIGPVPIV
Ga0190265_1023362233300018422SoilMTLSYSTLQQLAVSVIGALVASSLFISAAIGPVPII
Ga0190265_1058042543300018422SoilMTISLNIQQLAVSLIGALVASSLFISAAVGPVPVI
Ga0190265_1066663313300018422SoilMSVSFNLQKLALSVFGALVASSLFLTAAVGPVPIV
Ga0190265_1077629613300018422SoilMSLSIHSLQSLAISLIGAVFASSLFLSAALSSAPVI
Ga0190265_1082285523300018422SoilMTLSYANLHQIAYSILGALFASSLFISAAVGPVPVI
Ga0190265_1086625423300018422SoilMTLSYASLHQIAFSVLGALFASTLFISAAVGPVPVI
Ga0190272_1006093443300018429SoilMTLSINLQKLALSVFGALVASSLFLSAAVGPAQVI
Ga0190272_1021327333300018429SoilMTLSYNMQQLALSVIGALVASSLFISAAVGPVPVI
Ga0190272_1022731333300018429SoilMTLSLNIQQLAVSVLGALVASSLFISAAVGPVPVI
Ga0190272_1044855733300018429SoilMTLSYSNLQQLAVSLIGAIVASSLFISAAVGPVPIV
Ga0190272_1073882313300018429SoilMTVSLNLQKLALSVFGALVASSLFLTAAVGPVPVI
Ga0190272_1099614833300018429SoilMTMSYNFSQLMVSLVGALIASSLFITAAVGPVPII
Ga0190272_1158122323300018429SoilMTLSYANMQQLALSVIGALVASSLFISAAVGPVPII
Ga0190272_1192762833300018429SoilTMTLSINLQKLALSVFGALVASSLFLSAAVGPVQVI
Ga0190275_100000151523300018432SoilMTLSINLQKLALSVFGAIVASSLFLSAAVGPVQVI
Ga0190275_10000352343300018432SoilMSLSIHSLQSLAISLIGAVFASSLFLSAALSSASVI
Ga0190269_1015676923300018465SoilMTVTSNLQKLALSVFGALVASSLFLTAAVGPVPVI
Ga0190270_1208408523300018469SoilMSISYANLQSLVVSVIGAVLASSLFISAAGSVPIV
Ga0190274_1000022023300018476SoilMTLSFNNLQQLAASVIGAVLVSTLFISAAIGPVPIV
Ga0190274_1064298913300018476SoilWRPKMTLTYANLQKITFSIVGALVASSLFLSAAVGPVPFV
Ga0190274_1166338623300018476SoilMTLSYSNLQALTVSVVGALLAASLFVSAAVGPVPII
Ga0190271_1135751123300018481SoilMKMSIYANLQHVALSIVGALLASSLFISAAVGPVPVI
Ga0190273_1182255513300018920SoilMTLSYDKLHRIAFSVLGALFASSLFISAAVGPVPVI
Ga0180110_109787433300019208Groundwater SedimentGPVARFRRMKMSIYANLYNVAFSIVGALFASSLFISAAVGPVQVI
Ga0187894_100000071713300019360Microbial Mat On RocksMTIYANLQSLALSVVGAIVASSLFITAAVGPVPVI
Ga0187894_10000398373300019360Microbial Mat On RocksMSVSINLQKLALSVFGALVASSLFLTAAVGPVPVI
Ga0173482_1044277123300019361SoilMKMSIYANLYNVAFSIVGALFASTLFISAAVGPVQVI
Ga0190264_1009304723300019377SoilMTISLNLQQLALSVIGALVASSLFISAAVGPVPVV
Ga0193752_101169953300020027SoilMTISFNLQQLAVSVIGALLASSLFISAAVGPVPII
Ga0193752_112237913300020027SoilMTLSINLQKLALSVFGAVVASSLFLSAAVGPGQII
Ga0193752_118287543300020027SoilMTLSINSLQTLAFSLIGALVASSLFLSAAVGPVPVI
Ga0193753_1016257843300020034SoilMTVTINTMQSLAISLFGALVATSLFLSAAVGPAPVL
Ga0193745_1000005673300020059SoilMSLSIHSLQSLAISLVGAIVASSLFLSAAVGPVPVI
Ga0196964_1010252533300020202SoilMTLSYTFSQLMVSAIGALVASSLFISAAVGPVPVI
Ga0196973_105675623300021061SoilMSLSYANLQALALSVVGAIIASSLFVSAAVGPVPIV
Ga0196978_100185693300021067SoilMTLSYDNMHRIAFSVLGALFASTLFISAAVGPVPVI
Ga0193706_112997123300021339SoilMTLSINLQKLALSVFGALVASSLFISAAVGPVPII
Ga0207697_1022742733300025315Corn, Switchgrass And Miscanthus RhizosphereMTVSYNLQKLALSVFGALVASSLFLTAAVGPVPVI
Ga0207682_10000998103300025893Miscanthus RhizosphereMTLSFNNLQQLAASVIGAVLVSTLFISAAVGPVPII
Ga0207682_1016278513300025893Miscanthus RhizosphereMTLSIHSLQTMAFSLVGALVASSLFLSAAIGPVPVI
Ga0207688_1029440323300025901Corn, Switchgrass And Miscanthus RhizosphereMTVSYNLQKLVLSVFGALVASSLFLTAAVGPVPVI
Ga0207680_1105057833300025903Switchgrass RhizosphereMTLSLNSLQTLAFSLVGALVASSLFLSAAMGPVQIV
Ga0207645_1046520523300025907Miscanthus RhizosphereMSLSINSLQSLAISLVGALVASSLFLSAAVGPVPVI
Ga0207681_1031894643300025923Switchgrass RhizosphereMTLSIHGLQTLAFSLVGALVASSLFLSAAIGPVPVL
Ga0207681_1074977423300025923Switchgrass RhizosphereMSVSINLQKLAISVFGALVASSLFLTAAVGPVPVI
Ga0207659_1101052323300025926Miscanthus RhizosphereMTVSHNLQKLALSVFGALVASSLFLTAAVGPVPVI
Ga0207687_1122641923300025927Miscanthus RhizosphereMSLSINSLQSLAISLIGALVASSLFLSAAVGPVPVI
Ga0207701_1128490223300025930Corn, Switchgrass And Miscanthus RhizosphereMSIYANLYNVAFSIVGALFASTLFISAAVGPVQII
Ga0207709_1027325623300025935Miscanthus RhizosphereMTLSINSLQSLAISLVGALVASSLFLSAAIGPVPQVL
Ga0207711_1049103513300025941Switchgrass RhizosphereMTLSYNSLQSLALSLVGALVASSLFLSAAMGPVQVV
Ga0207689_1017284433300025942Miscanthus RhizosphereMTLSLNSLQTLAFSLVGALVASSLFLSAAVGPVPMI
Ga0207651_1032951433300025960Switchgrass RhizosphereMSLSIQSLQSLAISLVGALVASSLFLSAAVGPVPVI
Ga0207668_1015412523300025972Switchgrass RhizosphereMTVSYNLQKLALSVFGALVASSLFLAAAVGPVQVI
Ga0209468_100530673300026306SoilMTLSIHSLQTLAFSLVGALVASSLFLSAAIGPVPVI
Ga0207428_1121157113300027907Populus RhizosphereARFRRMKMSISYANLYNVAFSIVGALFASSLFISAAVGPVQII
Ga0268266_1000038893300028379Switchgrass RhizosphereMSVSFNLQKLALSVFGALVASSLFLTAALGPVPVI
Ga0268266_10000489573300028379Switchgrass RhizosphereMTLSINTLQTLTISVFGALLASSLFLSAVIGPVSMV
Ga0268265_1039015533300028380Switchgrass RhizosphereMSTYANLYNVAFSIVGALFASTLFISAAVGPVQVI
Ga0272482_1001396023300028578SoilMTISLNIQQLAVSLIGALVASSLFISAAVGPVPII
Ga0272482_1007760223300028578SoilMTLSYANLHQIAFSVFGALFASMLFISAAVGPVPVI
Ga0247823_1062708213300028590SoilMSVSFNLQKLALSVFGALVASSLFLTAAVGPVPVI
Ga0247821_1031070633300028596SoilMSIYANLHQIALSVVGALVASSLFITAAVSSAPVI
Ga0307503_100000151683300028802SoilMTLSINLQKLAVSVFGALVASSLFLSAAIGPVQIV
Ga0299914_1052267543300031228SoilMTLSFANLHQTALSIVGALFASTLFVSAAVGSVPVI
Ga0299913_1000396273300031229SoilMTLSFANLHQIALSIVGALFASSLFLSAAVGPVPVI
Ga0307505_1003056333300031455SoilMSISFNLQQIAVSVIGALVASSLFISAAVGPVPII
Ga0307505_1034644323300031455SoilMTLSYNFSQLMVSVMGALIASSLFISAAVGPVPVI
Ga0307513_1016741723300031456EctomycorrhizaMTLSYSNLQSLAVSVVGALFAASLFVSAAVGPVPIV
Ga0307513_1048405223300031456EctomycorrhizaMTLSYSNLQALTVSVVGALLAASLFVSAAVGPVPIV
Ga0307408_10071777923300031548RhizosphereMTLSYTFSQLMVSVMGALIASSLFISAAVGPVPVI
Ga0307413_1005986843300031824RhizosphereMTFSYISLQQLALSIFAAVVTSSLLISAAVGPVPVI
Ga0307414_1037108113300032004RhizosphereMTLSYISLQQLAISIVGAVLASSLFISAAVGPVPLI
Ga0307414_1097981013300032004RhizosphereMTLSYINLQQLALSIVGAVVASSLFISAAVGPVPVI
Ga0307411_1074128313300032005RhizosphereMTVSFNLQKLALSVFGALVASSLFLTAAAGPVLVA
Ga0310890_1138665833300032075SoilMSISYANLYSVAFSIVGALFASTLFISAAVGPVQVI
Ga0307472_10033454723300032205Hardwood Forest SoilMSLSIHSLQTMAVSLIGALVASSLFLSAAVGPVPVI
Ga0335075_1000006743300032896SoilMSITFNLQKLALSVFGAVVASSLFLAAAVGPVPVI
Ga0335075_1072317723300032896SoilMIASVNLQQLAVSVIGALVASSLFLSAAIGPVPVI
Ga0334934_006018_468_5783300034006BiocrustMTLSYANLHRLALSVVGALFASTMFITAAVGPVPVI
Ga0334934_016257_839_9493300034006BiocrustMTLSYDNFHRIAFSIVGALLASSLFVSAAVGPVPVI
Ga0334928_138934_243_3563300034134Hypolithic BiocrustMTFNFSNLQQIAISAVGALLAASLFLSAAAGPVVQFV
Ga0370480_0253804_88_1953300034169Untreated Peat SoilMTISYNLQQLAVSVIGALLASSLFISAAIGPVAIV
Ga0370501_0386833_198_3083300034195Untreated Peat SoilMTLSLNGLQTLAFSLVGALVASSLFLSAAMGPVQIV
Ga0334947_001471_5299_54063300034251Sub-Biocrust SoilMTLSYNFPQLMVSLVGALVASSLFISAAVGPVPVI
Ga0370497_0000001_223177_2232843300034965Untreated Peat SoilMTLSINLQKLALSAFGALVASTLFLSAAIGPVQVI


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