3300012673: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT399_2

Overview

Basic Information

• IMG/M Taxon OID: 3300012673
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118068 | Gp0155856 | Ga0137339
• Sample Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT399_2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 74592867
• Sequencing Scaffolds: 41
• Novel Protein Genes: 44
• Associated Families: 42

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
Not Available	13
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Glomerellales → Glomerellaceae → Colletotrichum → Colletotrichum acutatum species complex → Colletotrichum lupini	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-6	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group	2
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_19FT_COMBO_46_12	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Sediment Microbial Communities From The East River, Co, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → flood plain → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9229
  • Long. (^o): -106.9511
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000842	Metagenome / Metatranscriptome	865	Y
F004605	Metagenome / Metatranscriptome	431	N
F009084	Metagenome / Metatranscriptome	323	Y
F012898	Metagenome	276	Y
F017253	Metagenome	242	Y
F019458	Metagenome	229	Y
F019814	Metagenome / Metatranscriptome	227	Y
F021258	Metagenome / Metatranscriptome	219	Y
F028403	Metagenome	191	Y
F028847	Metagenome	190	N
F030826	Metagenome / Metatranscriptome	184	Y
F032553	Metagenome / Metatranscriptome	179	Y
F036533	Metagenome / Metatranscriptome	169	Y
F039189	Metagenome / Metatranscriptome	164	Y
F041508	Metagenome / Metatranscriptome	160	Y
F043844	Metagenome / Metatranscriptome	155	Y
F044805	Metagenome	154	Y
F047155	Metagenome / Metatranscriptome	150	Y
F051236	Metagenome	144	Y
F052687	Metagenome	142	Y
F054395	Metagenome	140	Y
F060461	Metagenome	133	Y
F060627	Metagenome / Metatranscriptome	132	N
F060876	Metagenome / Metatranscriptome	132	Y
F069483	Metagenome / Metatranscriptome	124	Y
F069627	Metagenome / Metatranscriptome	123	Y
F070271	Metagenome	123	N
F071802	Metagenome / Metatranscriptome	122	N
F074102	Metagenome	120	Y
F074158	Metagenome	120	Y
F082310	Metagenome / Metatranscriptome	113	Y
F083564	Metagenome / Metatranscriptome	112	N
F085767	Metagenome / Metatranscriptome	111	Y
F086467	Metagenome / Metatranscriptome	110	Y
F087944	Metagenome / Metatranscriptome	110	Y
F088380	Metagenome / Metatranscriptome	109	Y
F092309	Metagenome	107	N
F096147	Metagenome	105	Y
F097616	Metagenome / Metatranscriptome	104	Y
F098853	Metagenome / Metatranscriptome	103	Y
F103515	Metagenome / Metatranscriptome	101	Y
F104661	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0137339_1000282	All Organisms → cellular organisms → Bacteria	2114
Ga0137339_1000402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1952
Ga0137339_1000457	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1904
Ga0137339_1002013	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1337
Ga0137339_1002485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1266
Ga0137339_1002547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1258
Ga0137339_1002556	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1257
Ga0137339_1002686	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1241
Ga0137339_1003242	Not Available	1179
Ga0137339_1003556	All Organisms → cellular organisms → Bacteria	1149
Ga0137339_1004647	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Glomerellales → Glomerellaceae → Colletotrichum → Colletotrichum acutatum species complex → Colletotrichum lupini	1070
Ga0137339_1004701	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1067
Ga0137339_1007575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	932
Ga0137339_1007779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-6	925
Ga0137339_1009091	Not Available	883
Ga0137339_1011323	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	828
Ga0137339_1011649	All Organisms → cellular organisms → Bacteria	821
Ga0137339_1011885	Not Available	816
Ga0137339_1013542	Not Available	784
Ga0137339_1014459	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	769
Ga0137339_1015484	Not Available	752
Ga0137339_1017254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	725
Ga0137339_1017654	All Organisms → cellular organisms → Bacteria	720
Ga0137339_1018422	All Organisms → cellular organisms → Bacteria → FCB group	710
Ga0137339_1018610	All Organisms → cellular organisms → Bacteria	708
Ga0137339_1018791	Not Available	706
Ga0137339_1019620	Not Available	696
Ga0137339_1021695	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	673
Ga0137339_1026133	All Organisms → cellular organisms → Bacteria	630
Ga0137339_1027595	Not Available	617
Ga0137339_1028731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607
Ga0137339_1029094	Not Available	604
Ga0137339_1029141	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	604
Ga0137339_1032788	Not Available	576
Ga0137339_1033122	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	573
Ga0137339_1033192	Not Available	573
Ga0137339_1034850	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_19FT_COMBO_46_12	561
Ga0137339_1035894	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	554
Ga0137339_1037017	Not Available	547
Ga0137339_1040979	All Organisms → cellular organisms → Bacteria → FCB group	525
Ga0137339_1042739	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0137339_1000282	Ga0137339_10002821	F069627	IRAASEIAIQVELTDEETIPIYMRISDKVLHLRRLGMTYTNIAERLGINPWMAKKAARWGNIQKA*
Ga0137339_1000282	Ga0137339_10002824	F069627	VDLTDEDAVPGYMKISEKVLHLRRLGMPYTSIAERIGVNLWMAKRAARWAKAQNK*
Ga0137339_1000402	Ga0137339_10004022	F087944	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPKTAPVDPKADVTTQLASVGERLAALESAEAAQAKLVSQMAEQLQGIARRAAVGYWLGLGGLLLSCGALLLAAFR*
Ga0137339_1000457	Ga0137339_10004573	F074102	MKKPKTVRPFYFVNMSKQDVVDMLNNECPVNIKYNEDLVDRIYARYPLVSKTEISIIVKAVFQSFRDLLVLGKVLNFNTLFFDTKLYFFDYYSRGHILPSLKVKMSTPPKLRKK*
Ga0137339_1002013	Ga0137339_10020132	F096147	MNADGLKNEFVSKYIKDGEGKFYKFLMLYAVNKLMAISEGKYKGTSPELEFMDYYDRLIILYRREGQTVYRDLARLFRKAAHKIYRIMLKKDMTPRNARFLNLV*
Ga0137339_1002485	Ga0137339_10024852	F021258	VQAEFGVAGLFERMDLRAQIVGAQEIVGDPQPAGRVAF*
Ga0137339_1002547	Ga0137339_10025472	F098853	MELTLERYLQDEGLREELERRSHCERAEQMHHYFARAAQALRIPHVPEPRTGACG*
Ga0137339_1002556	Ga0137339_10025561	F070271	MNHILITSEILITVVAPLLVLYLRGAWKQRTIMACMSTIPILWYFVYAPLHELSHLLGAYLVGGQITEVKLIPRFWAGETGGAWIKSEGFTNEWSQLIMTISPYFFDLLSIAVGVYVLQRKLSSNAFLIGFLFMLLCLRPTFDLVCETIGFATGFRGDLFHIALTVGGFATWTFLALSIAFSLYAINVVIGRFKGFPQEAAKAAT*
Ga0137339_1002686	Ga0137339_10026861	F060461	VNAKQFFRIEVSTSWGHLIRERKTLTKDEEKVREARKACRDGIKKAWDIYTQDNSVVKEAKKTLDSAIDEAYKLCLPEHGERMAQTEYEQATKLYFKTLYKVHRKFADTIGQIWGVFMKDMETSPMLTKKNI*
Ga0137339_1003242	Ga0137339_10032422	F097616	MNGPLLISLLPPDRSWDSAPAISGSAPFIAILLLIGILLSLFLRHPDR*
Ga0137339_1003556	Ga0137339_10035564	F069627	VDLTDEDAVPAYVKISEKVLHLRRLGMPYTSIAEHLGVNLWMAKRAARWAKTHNK*
Ga0137339_1004647	Ga0137339_10046472	F019458	LDIFNKLKESSIFSFNNRYLVNIFYSIILNTRAIEVSIVGEP*
Ga0137339_1004701	Ga0137339_10047011	F092309	MNRGIAAALLTLFVGLAVDPSWVMVRTAAWAQLLGELTSEDKLLQEATKRGLIPKDHLGLFQEASARGLIKTEPSNLDEGGTYLQAGNEVIYLSPEGGGVALSDHTTKKRMRQLGTNALEENVTKGTIKAWMDGSFQKVASTQYPVQPTQPTAPSSRLGS*
Ga0137339_1007575	Ga0137339_10075752	F082310	MSGGMRLWWSTCPKCLKDFVVAWELRHAKYKLICPFCDHRYLPEQSAAIDERHTE*
Ga0137339_1007779	Ga0137339_10077792	F071802	MGANTSKPNYASLITKILIVLVILNIAGDVLAAAFFLWDPSLGELSVYGGLIASFVGKSGAVMITSAILLGYAVVYAVSVFGLLSKLKWAPPLVIAISVVNRALALGVIFEPNVAWLIWSAWKLVIIALAGYLWRKT*
Ga0137339_1009091	Ga0137339_10090911	F028847	MQEERRLFNLRELEKMLKSHYKKQYSDLEISFRDTKFVTYVIHEKGKPWGRSLTTEESFTEIAKILFPDEDVRIVQIQSDPPKVELLIEKS*
Ga0137339_1011323	Ga0137339_10113231	F030826	TGDLSAHHDMLLERMVAIGKELIADGAHALIPLGGRLVPYVVKPLELEAELKVPVINTKLVGIRQAETLVLGKNSHSIKSYPHAAGLSPENVSRRDAK*
Ga0137339_1011649	Ga0137339_10116492	F039189	MTTLRSSLNPEEQPDLIEGPTTYKIGPNQWELICAVCNESYYVDNLTLKQAVSAMEEGRENPFCCDECEAEFEAMSHNE*
Ga0137339_1011885	Ga0137339_10118852	F036533	VGLVVAWVVFWLNTALFPCCEVAAAVLGGHADNGSRSASAAPPLHHSDATHSELLDHSLDSPCGYTLISRPPLVGEYEVLTPDRSPLEWFAVDAPVATSLTAANKSANLALARAASPPSLRLYLRTQRLLI*
Ga0137339_1013542	Ga0137339_10135422	F088380	MKIALIVAAVFSVLALAEISAQQWGSSQLENPNVTGMTKLPDLLSMGPDPGGHTGATVTPETTKTGQPAVDSARATASGGKTESSGPPVSDPQQARKQ*
Ga0137339_1014459	Ga0137339_10144592	F069483	MQGRWRAPSERIRTASEIPIEVDLTDEDAVPVYMKISEKVLHLRRLGMAYVTIAERLKINLWMAKRAARWGKTHLKRRENTSPY*
Ga0137339_1015484	Ga0137339_10154842	F051236	AGIWGLIVISAFMMPLSLAMASPAELAKRIGQQRISDKGS*
Ga0137339_1017254	Ga0137339_10172541	F047155	MSEETTQKGLGPKKRLSKNGSIGVMVAGGLMILIPWFFFPAEQGSTLQITKTIVGVAGFVILCAGAYYRP*
Ga0137339_1017654	Ga0137339_10176541	F032553	DRVKKEARVTVEGGGVSPDQIVAAIQGAGKFQATLAG*
Ga0137339_1018422	Ga0137339_10184222	F017253	MPPNAGSYTQGRIAGDFLSGQKVARAERCTPKTTAAALDG*
Ga0137339_1018610	Ga0137339_10186101	F060876	PPHAHAAALFYDYVISEEGQRLIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNAKLLKDGVQILDEVVLKRKSSSL*
Ga0137339_1018791	Ga0137339_10187912	F103515	MEADAMATTAMEARGKVCLMVLVNPHENPLEKCRPEECSAWSWDDDGDAGGNRLGHCILAGEAARSRPRKKQEIN*
Ga0137339_1019161	Ga0137339_10191611	F083564	MKLLTGSILAAFGITLAGIALADVTTRSTEDMNADLMRTYKSHGGPPAGAVGTRSEAGNYSELMRDWDGNLTNKPGTIVGAASTDPLIVRGGSRTLKDVEFGRR*
Ga0137339_1019620	Ga0137339_10196203	F060627	MISAFRRLFSTRRPQISVRSRVNLLGTFGLLERTDGVVESMVGDEACVEWANGAR
Ga0137339_1021695	Ga0137339_10216951	F085767	FCWVAIGWMVGRVLHIGPGGPIARLRDLVFSFAAAGMLVFAVFFAVESTQVTETVMWRIPIGEGGIAKIEDRALLLPQGMISFEYLQVDHDLIGYHRVIPIAFLGNERLEVKHDRMEKWFLDNLWKHMHGYSERGLSVRSRVEQFLVVPNQEYEVVEREKQVYFRPAAPGQ*
Ga0137339_1026133	Ga0137339_10261332	F044805	MLLSKFLFVPVAFVIALSGQVFSAPDSKYHGHKTPHGGGVKEAEGMHVEFLIDKSGQPKLYLYDKSMKPLERSDLEAKLTVKGHGGSQDTRVLKFSKDAKEGPLYKGDPIKGLTDWDTAVVSLKLKDSWTHIRFSHHSDGKVGH*
Ga0137339_1026487	Ga0137339_10264871	F104661	NVTRIDDSGTFGVRTWSTGAEWRRTRNVPGAQLPRGSIGPFAFNERVAVYSRDGRVELREVASGELVWAVPLVPPGLDAEGEGVPLRLDLVALAPRGGLVLSYESPASGNGPGAIVLRRMSDGGTVAMYDVTGVSALAFAPDGGRFVYSTGAGRSYTALARVPR*
Ga0137339_1027595	Ga0137339_10275952	F074158	MDLPDWSNRFGSLEPSDRSVLKSAESSALGHFAKLVIESKGVHNFTLLEVGSGKIKKVLSVLNAHIGRPLYEIAELEISD*
Ga0137339_1028731	Ga0137339_10287311	F000842	MLDLPGVSGGGTQGQNKAEQERPYLAAKSGKDRAYKAGRLKSHGAGRESEGSTVPAKARKTTRWREGALL*
Ga0137339_1029094	Ga0137339_10290941	F004605	GRLRRPQLIGRPLGGKQAACCQRGRFAMSLNSRALLVVLCLLGATEVVGQEAVTALDRTLSKTHMRQDTTYVAIADAPVQAFAPTTIQCGKQSCTVRVEVSSQFFNVTSGNAVRLHVKADGAPFPVTGFEIDGGINRPVAHLTTVSSLKSDLSPGPHTISVDFDMRTPGGKAEASIRTLTIQVFTP*
Ga0137339_1029141	Ga0137339_10291411	F012898	MNGPIVVTVAALKANRNKWVRFVKAYLDATAYVTSSKEGSIGVLRRLMPGDDKESLDHAYEQMRARATVDLVPPEAAVENLVKMMIYVDKRAASVDRSKLADYSILRELLAQSKTVPAKK
Ga0137339_1032788	Ga0137339_10327881	F086467	PLVKAGIAGQLHSGVWPVDELAQVEFTTGKKWRVIAAPASITKGLHYAMLIASKKAIAENREGLIRFLEGWIRSQRLMGSKSPADKLAFAKVAAKASEIDVKVALASIDGYQAIGYWVNNDGLDQSQVMSQLDQLVKIGSIKAANKPSYDKIVDKSLYAEALKRVESKSGKPGK*
Ga0137339_1033122	Ga0137339_10331222	F054395	DLLVGPIVEQIGLNQLWKGVLHGGSVFDGTLFDTMAVIRREAGESLLEGVDVEEGDGKGADATAGAAESAGNFTQQGGGCPLEPVVSFLIQRSRVGQTGS*
Ga0137339_1033192	Ga0137339_10331921	F041508	SEKFLMGHWYLFWSDWREAFLISWSYGMEDPMAPSEREGNSEGGGSARRIASRQAKRAGITRS*
Ga0137339_1034850	Ga0137339_10348502	F028403	GWGTVDRAKEGDRFIKPDTGKIYEVARVVMGGDWVVLKEEGGDHQILTSQESLGTWKKLG
Ga0137339_1035894	Ga0137339_10358942	F019814	MNEKLHKKVSPPFEGGVVGTIDYLIYTVFSFPTGVVDSLISSYLY*
Ga0137339_1037017	Ga0137339_10370171	F043844	MRHEFWMVLATLVVPFFWILPLSRAAYARVSLRRDSRF*
Ga0137339_1040979	Ga0137339_10409791	F052687	VTRFLAILLLLAAVGGGLYHLLTMEHVEDVKVTGKLQISQQVGNYVKASQADDDSYFAVVEGKVKNNLGKPIKNVFIKYMIAGQETSATVFDLAPGQEINFNTRG
Ga0137339_1042739	Ga0137339_10427392	F009084	AFRKAQQEVAEFHRFQALRAHLVALNEKICALRPVEHPQGGWTALEKKRLLSSIRRWRGRSIPG*