Metagenome / Metatranscriptome Family F087944

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087944
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	105 residues
Representative Sequence	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPKTAPVDPNADVTTQLASVGERLAALESAEAAQAKLVSQMAEQLQGIARRAAIAYWLGLSGLLLSCAALLLAVFR
Number of Associated Samples	89
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	48.18 %
% of genes near scaffold ends (potentially truncated)	26.36 %
% of genes from short scaffolds (< 2000 bps)	75.45 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.091 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (24.546 % of family members)
Environment Ontology (ENVO)	Unclassified (41.818 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (56.364 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.97% β-sheet: 0.00% Coil/Unstructured: 36.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF04828	GFA	23.64
PF08534	Redoxin	3.64
PF04972	BON	1.82
PF09720	Unstab_antitox	1.82
PF01066	CDP-OH_P_transf	0.91
PF03061	4HBT	0.91
PF00694	Aconitase_C	0.91
PF01872	RibD_C	0.91
PF13417	GST_N_3	0.91
PF11026	DUF2721	0.91
PF01548	DEDD_Tnp_IS110	0.91
PF03682	UPF0158	0.91
PF01663	Phosphodiest	0.91
PF00171	Aldedh	0.91
PF13202	EF-hand_5	0.91
PF04359	DUF493	0.91
PF11695	DUF3291	0.91
PF01844	HNH	0.91
PF04909	Amidohydro_2	0.91
PF02776	TPP_enzyme_N	0.91
PF14497	GST_C_3	0.91
PF02798	GST_N	0.91
PF06808	DctM	0.91
PF08327	AHSA1	0.91
PF14384	BrnA_antitoxin	0.91
PF13279	4HBT_2	0.91
PF01494	FAD_binding_3	0.91
PF01042	Ribonuc_L-PSP	0.91
PF02775	TPP_enzyme_C	0.91
PF00583	Acetyltransf_1	0.91
PF06094	GGACT	0.91
PF04255	DUF433	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3791	Uncharacterized conserved protein	Function unknown [S]	23.64
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.82
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.91
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.91
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.91
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.91
COG2921	Putative lipoate-binding regulatory protein, UPF0250 family	Signal transduction mechanisms [T]	0.91
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.91
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.91
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.91
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.91
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.91
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.91
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.91
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.91
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.91
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.09 %
Unclassified	root	N/A	30.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.09 %
Unclassified	root	N/A	30.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.09 %
Unclassified	root	N/A	30.91 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.36 %
Unclassified	root	N/A	30.91 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.91 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	19.09 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13.64 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.91 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.82 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	7.27 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.91 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	11.82 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3.64 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.91 %
Gammaproteobacteria bacterium SG8_15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_15	0.91 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.91 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11.82 %
Serpentinimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Serpentinimonas	1.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	0.91 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.91 %
Ramlibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	0.91 %
Gammaproteobacteria bacterium SG8_15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_15	0.91 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.91 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	11.82 %
Serpentinimonas barnesii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Serpentinimonas → Serpentinimonas barnesii	1.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.91 %
Ramlibacter tataouinensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis	0.91 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.91 %
Gammaproteobacteria bacterium SG8_15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_15	0.91 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.91 %
Bradyrhizobium sp. CCGUVB23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	10.91 %
Serpentinimonas barnesii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Serpentinimonas → Serpentinimonas barnesii	1.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	0.91 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.91 %
Ramlibacter tataouinensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis	0.91 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.91 %
Gammaproteobacteria bacterium SG8_15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_15	0.91 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908043\|A2_c1_ConsensusfromContig12397	Not Available	679	Open in IMG/M
2140918007\|ConsensusfromContig30944	Not Available	680	Open in IMG/M
3300000574\|JGI1357J11328_10011193	All Organisms → cellular organisms → Bacteria → Proteobacteria	5050	Open in IMG/M
3300001380\|JGI1356J14229_10175053	Not Available	640	Open in IMG/M
3300002104\|C687J26621_10172519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Serpentinimonas → Serpentinimonas barnesii	652	Open in IMG/M
3300002124\|C687J26631_10058385	All Organisms → cellular organisms → Bacteria → Proteobacteria	1339	Open in IMG/M
3300002223\|C687J26845_10086906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1195	Open in IMG/M
3300002907\|JGI25613J43889_10002109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5231	Open in IMG/M
3300004778\|Ga0062383_10010743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3006	Open in IMG/M
3300004782\|Ga0062382_10206619	Not Available	860	Open in IMG/M
3300005829\|Ga0074479_10826373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2347	Open in IMG/M
3300005833\|Ga0074472_10391839	All Organisms → cellular organisms → Bacteria → Proteobacteria	7509	Open in IMG/M
3300006852\|Ga0075433_10786868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	831	Open in IMG/M
3300007788\|Ga0099795_10315130	Not Available	691	Open in IMG/M
3300009078\|Ga0105106_10596127	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	792	Open in IMG/M
3300009167\|Ga0113563_10066867	All Organisms → cellular organisms → Bacteria → Proteobacteria	3130	Open in IMG/M
3300009597\|Ga0105259_1146388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	573	Open in IMG/M
3300009609\|Ga0105347_1223489	Not Available	765	Open in IMG/M
3300009678\|Ga0105252_10247969	Not Available	779	Open in IMG/M
3300009820\|Ga0105085_1112804	Not Available	540	Open in IMG/M
3300010399\|Ga0134127_10601103	All Organisms → cellular organisms → Bacteria → Proteobacteria	1128	Open in IMG/M
3300011395\|Ga0137315_1011781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	1050	Open in IMG/M
3300011408\|Ga0137460_1053766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	747	Open in IMG/M
3300011413\|Ga0137333_1110759	Not Available	637	Open in IMG/M
3300011419\|Ga0137446_1034058	All Organisms → cellular organisms → Bacteria → Proteobacteria	1093	Open in IMG/M
3300011436\|Ga0137458_1016102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1786	Open in IMG/M
3300011438\|Ga0137451_1034024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1481	Open in IMG/M
3300012034\|Ga0137453_1023439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	995	Open in IMG/M
3300012040\|Ga0137461_1262431	Not Available	503	Open in IMG/M
3300012174\|Ga0137338_1003731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2606	Open in IMG/M
3300012226\|Ga0137447_1015062	All Organisms → cellular organisms → Bacteria → Proteobacteria	1119	Open in IMG/M
3300012226\|Ga0137447_1117769	Not Available	535	Open in IMG/M
3300012361\|Ga0137360_11503800	Not Available	577	Open in IMG/M
3300012671\|Ga0137318_1004055	All Organisms → cellular organisms → Bacteria → Proteobacteria	1145	Open in IMG/M
3300012673\|Ga0137339_1000402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1952	Open in IMG/M
3300012918\|Ga0137396_10591155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	821	Open in IMG/M
3300012931\|Ga0153915_10372648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	1611	Open in IMG/M
3300012964\|Ga0153916_10016970	All Organisms → cellular organisms → Bacteria → Proteobacteria	6048	Open in IMG/M
3300014326\|Ga0157380_12439875	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300014873\|Ga0180066_1004777	All Organisms → cellular organisms → Bacteria → Proteobacteria	2096	Open in IMG/M
3300014877\|Ga0180074_1026298	All Organisms → cellular organisms → Bacteria → Proteobacteria	1159	Open in IMG/M
3300014879\|Ga0180062_1126582	Not Available	586	Open in IMG/M
3300014880\|Ga0180082_1135256	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300014883\|Ga0180086_1000351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6852	Open in IMG/M
3300014885\|Ga0180063_1122983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	806	Open in IMG/M
3300015249\|Ga0180071_1009450	All Organisms → cellular organisms → Bacteria → Proteobacteria	1077	Open in IMG/M
3300015249\|Ga0180071_1047840	Not Available	636	Open in IMG/M
3300015251\|Ga0180070_1039474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	626	Open in IMG/M
3300015254\|Ga0180089_1019354	All Organisms → cellular organisms → Bacteria → Proteobacteria	1237	Open in IMG/M
3300017997\|Ga0184610_1017561	All Organisms → cellular organisms → Bacteria → Proteobacteria	1888	Open in IMG/M
3300018031\|Ga0184634_10077162	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300018056\|Ga0184623_10002992	All Organisms → cellular organisms → Bacteria → Proteobacteria	7238	Open in IMG/M
3300018059\|Ga0184615_10049070	All Organisms → cellular organisms → Bacteria → Proteobacteria	2350	Open in IMG/M
3300018059\|Ga0184615_10063455	All Organisms → cellular organisms → Bacteria → Proteobacteria	2062	Open in IMG/M
3300018059\|Ga0184615_10405220	All Organisms → cellular organisms → Bacteria → Proteobacteria	747	Open in IMG/M
3300018074\|Ga0184640_10504250	Not Available	532	Open in IMG/M
3300018077\|Ga0184633_10187923	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300018084\|Ga0184629_10128295	All Organisms → cellular organisms → Bacteria → Proteobacteria	1269	Open in IMG/M
3300018084\|Ga0184629_10598005	All Organisms → cellular organisms → Bacteria → Proteobacteria	563	Open in IMG/M
3300019244\|Ga0180111_1068939	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300020068\|Ga0184649_1116201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	506	Open in IMG/M
3300020146\|Ga0196977_1026347	Not Available	1402	Open in IMG/M
3300020195\|Ga0163150_10197884	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300021063\|Ga0206227_1003324	All Organisms → cellular organisms → Bacteria	2007	Open in IMG/M
3300021067\|Ga0196978_1095663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	574	Open in IMG/M
3300021081\|Ga0210379_10007726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3942	Open in IMG/M
3300021081\|Ga0210379_10026237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2235	Open in IMG/M
3300021090\|Ga0210377_10044670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3092	Open in IMG/M
3300021090\|Ga0210377_10309130	Not Available	966	Open in IMG/M
3300021090\|Ga0210377_10517820	All Organisms → cellular organisms → Bacteria → Nitrospirae	686	Open in IMG/M
3300025311\|Ga0209343_10125078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Serpentinimonas → Serpentinimonas barnesii	2084	Open in IMG/M
3300025313\|Ga0209431_11106310	Not Available	550	Open in IMG/M
3300025322\|Ga0209641_10407466	Not Available	980	Open in IMG/M
3300025322\|Ga0209641_10606437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	761	Open in IMG/M
3300025324\|Ga0209640_10205490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis	1672	Open in IMG/M
3300025325\|Ga0209341_10812899	Not Available	707	Open in IMG/M
3300025326\|Ga0209342_11079940	Not Available	604	Open in IMG/M
3300026320\|Ga0209131_1000973	All Organisms → cellular organisms → Bacteria → Proteobacteria	19764	Open in IMG/M
3300027533\|Ga0208185_1159053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_15	518	Open in IMG/M
3300027778\|Ga0209464_10037142	All Organisms → cellular organisms → Bacteria → Proteobacteria	1575	Open in IMG/M
3300027815\|Ga0209726_10007494	All Organisms → cellular organisms → Bacteria	12186	Open in IMG/M
3300027815\|Ga0209726_10067714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	2337	Open in IMG/M
3300027819\|Ga0209514_10046137	All Organisms → cellular organisms → Bacteria	3114	Open in IMG/M
3300027819\|Ga0209514_10347346	Not Available	659	Open in IMG/M
3300027903\|Ga0209488_10012882	All Organisms → cellular organisms → Bacteria → Proteobacteria	6114	Open in IMG/M
3300027903\|Ga0209488_10400499	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300027903\|Ga0209488_10697295	Not Available	728	Open in IMG/M
3300028803\|Ga0307281_10049386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	1318	Open in IMG/M
3300028803\|Ga0307281_10093626	Not Available	1003	Open in IMG/M
3300032401\|Ga0315275_12239547	Not Available	571	Open in IMG/M
3300032516\|Ga0315273_12091140	Not Available	669	Open in IMG/M
3300033480\|Ga0316620_10804974	Not Available	902	Open in IMG/M
3300033480\|Ga0316620_11408790	Not Available	687	Open in IMG/M
3300033480\|Ga0316620_12108733	Not Available	560	Open in IMG/M
3300033811\|Ga0364924_109650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	631	Open in IMG/M
3300033812\|Ga0364926_000795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3841	Open in IMG/M
3300033812\|Ga0364926_026110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	1071	Open in IMG/M
3300033812\|Ga0364926_071375	All Organisms → cellular organisms → Bacteria → Proteobacteria	693	Open in IMG/M
3300033813\|Ga0364928_0005263	All Organisms → cellular organisms → Bacteria → Proteobacteria	2248	Open in IMG/M
3300033813\|Ga0364928_0064928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	821	Open in IMG/M
3300033814\|Ga0364930_0017135	Not Available	2420	Open in IMG/M
3300033814\|Ga0364930_0152326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	789	Open in IMG/M
3300033815\|Ga0364946_109969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	618	Open in IMG/M
3300034113\|Ga0364937_069100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	685	Open in IMG/M
3300034164\|Ga0364940_0185504	Not Available	606	Open in IMG/M
3300034164\|Ga0364940_0219457	Not Available	558	Open in IMG/M
3300034165\|Ga0364942_0042704	Not Available	1454	Open in IMG/M
3300034257\|Ga0370495_0013932	All Organisms → cellular organisms → Bacteria	2385	Open in IMG/M
3300034354\|Ga0364943_0266976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	642	Open in IMG/M
3300034773\|Ga0364936_052734	Not Available	744	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.18%
Host-Associated	Host-Associated	1.82%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	58.18%
Terrestrial	Environmental → Terrestrial	40.00%
Plants	Host-Associated → Plants	1.82%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Sediment	35.45%
Soil	Environmental → Terrestrial → Soil	25.45%
Freshwater	Environmental → Aquatic → Freshwater	22.73%
Floodplain	Environmental → Terrestrial → Floodplain	13.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.82%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified	35.45%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	13.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	11.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.27%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	7.27%
Loam	Environmental → Terrestrial → Soil → Loam	7.27%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.45%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.64%
Lake	Environmental → Aquatic → Freshwater → Lake	2.73%
Sand	Environmental → Terrestrial → Soil → Sand	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	35.45%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	13.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.18%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.27%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	7.27%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.45%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	5.45%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.64%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.82%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	24.55%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	13.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	9.09%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	7.27%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	6.36%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	5.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.45%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.73%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.73%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.82%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.82%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	1.82%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.91%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.91%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.91%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.91%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908043	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2	Environmental	Open in IMG/M
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental	Open in IMG/M
3300000574	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m	Environmental	Open in IMG/M
3300001380	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m	Environmental	Open in IMG/M
3300002104	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2	Environmental	Open in IMG/M
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental	Open in IMG/M
3300002223	Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_1.2	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011395	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT200_2	Environmental	Open in IMG/M
3300011408	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT723_2	Environmental	Open in IMG/M
3300011413	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300011436	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300012034	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT526_2	Environmental	Open in IMG/M
3300012040	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2	Environmental	Open in IMG/M
3300012174	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT366_2	Environmental	Open in IMG/M
3300012226	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012671	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT300_2	Environmental	Open in IMG/M
3300012673	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT399_2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014873	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200B_16_10D	Environmental	Open in IMG/M
3300014877	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT366_16_10D	Environmental	Open in IMG/M
3300014879	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10D	Environmental	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300015249	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293A_16_10D	Environmental	Open in IMG/M
3300015251	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293_16_10D	Environmental	Open in IMG/M
3300015254	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10D	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300019244	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT293_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020068	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020146	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C	Environmental	Open in IMG/M
3300020195	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.P2.IB	Environmental	Open in IMG/M
3300021063	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos D4	Environmental	Open in IMG/M
3300021067	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13C	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300025311	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2 (SPAdes)	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025326	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027819	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300033812	Sediment microbial communities from East River floodplain, Colorado, United States - 65_j17	Environmental	Open in IMG/M
3300033813	Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M
3300033815	Sediment microbial communities from East River floodplain, Colorado, United States - 31_s17	Environmental	Open in IMG/M
3300034113	Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M
3300034165	Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M
3300034773	Sediment microbial communities from East River floodplain, Colorado, United States - 4_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A2_c1_00439370	2124908043	Soil	MAVTAVIPWKVILQALPTLVVTAKELWNHWSSRPKTAPVDPNADVRTQLASVAQRLEALESAETDQTKLVSQMAEQLQGIARRASVAYWLGLGGLLLACVAVLLAAFR
A_all_C_03315550	2140918007	Soil	MAVAAVIPWKVILQALPTLVVTAKELWNHWSSRPKTAPVDPNADVRTQLASVAQRLEALESAETDQTKLVSQMAEQLQGIARRASVAYWLGLGGLLLACVAVLLAAFR
JGI1357J11328_100111931	3300000574	Groundwater	MAVAVAIPWTVILKALPTLVVTARELWNHWSSRPKAAPVGPNADVRTQLASVAERLAALESAETGQAKLVSQMAEQLQGIARRASVAYWLGLSGLLLSCVALLLAVFR*
JGI1356J14229_101750531	3300001380	Groundwater	MAVVAAIPWAVILKALPTVVLTAKELWNHWSSRPKAAPVDPNADVRTQLASVAERLAALESAETDQARLISQIAEQLQGIACRASVAYWLGLSARLLSCAALLLAAFR*
C687J26621_101725191	3300002104	Groundwater	RRTRAMAVAAAIPWAVILKALPTVVVTAKELWNHWSSRPKTAPVDPNADVKTQLASVAERLVALESAETDQAKLISQIAEQLQGIARRASVAYWLGFSGLLLSCVALLLAAFR*
C687J26631_100583853	3300002124	Soil	MAVAAAIPWKLILKALPMVVVTARELWHQWSSRPKAAPVDPSADVRTQLVSVGERLAALESAETDQSQLVSQIAEQLQGIARRASVAYWLGLSGLLLSCVALLLAFFR*
C687J26845_100869062	3300002223	Soil	MAIAAAIPWKMIIQALPTVVVTAKELWNHWSSKPKTTPVDPNADVRTQLASVAERLAALESAETDQAKLISQIAEQLQGIARRASVAYWLGLGGLLLSCVALLLVAFR*
JGI25613J43889_100021093	3300002907	Grasslands Soil	MAVPVPWSTILQALPTVVVTAKDLWNHWSSRKTAPVDPSADVRTQLASVAERLAALESAETEQARIVSQMAEQLQGIARRVSIAYWLGLGGLLLACAALLVALLR*
Ga0062383_100107434	3300004778	Wetland Sediment	MAVAAAIPWKVILKALPMIVVTAKELWDYWSSRPKTAPVDPKADVTTQLASVGERLAALESAETVQAKLVSQMAEQLQGIARRASVGYWLGLSALLLSCAALLLAVFR*
Ga0062382_102066191	3300004782	Wetland Sediment	MAIAAAIPWKVILKALPTVVVTARELWNHWSSRPKKALVDPNADVRTQLASVAERLTALESAETDQARLISQIAEQLQGIARLASVA
Ga0074479_108263732	3300005829	Sediment (Intertidal)	MALPWSTILQALPTVAVTAKDLWNHWSSRKSTPVDPSADVRTQLASIAERLAALESAETEQARLVSQMAEQLQGIARRVSIAYWLGLGGLLVACAALAVALLR*
Ga0074472_103918394	3300005833	Sediment (Intertidal)	MAVAAVIPWKMILQALPTLVVTAKDLWKHWSSRPKAAVDPSSDVRTQLASVAQRLEALESAETDQTRLVSQMAEQLQGIARRASVAYWLGLSGLLLACAALLLAAVR*
Ga0075433_107868681	3300006852	Populus Rhizosphere	MAVAAVIPWKMILQALPTIVVTAKELWNHWSSRPKTAPVDPNADVRTQLASVAERLAALESAETEQAKLVSQIAEQLQGIARRAAVAYWLGLSGLALSCAALLLAAVR*
Ga0099795_103151302	3300007788	Vadose Zone Soil	MTVAAVIPWKEILRHLPTVVVAAKELWNHWSSRPKRGPVDPNADVRTQLAAVTERLAALEAAETDQAKVVSQIAEQLQAIARRAALAYWLGLGGLLLAGVALLVAVFR*
Ga0105106_105961271	3300009078	Freshwater Sediment	MAVVAAIPWTVILKALPTVVVTAKELWNYWSSRPKTAPVDPSADVRTQLASVAERLAALESAETDQAKLLSQIAEQLQGIAHRASVAYWLGLSGLLLSCVALLLAAFR*
Ga0113563_100668675	3300009167	Freshwater Wetlands	MAVAAAIPWAVILKALPTVVVTAKELWNHWSSRPKTAPVDPNADVKTQLASVAERLVALESAETDQARLISEIAEQLQGIARRASVAYWLGLSGLLLSCVALLLAAFR*
Ga0105259_11463881	3300009597	Soil	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADVTTQLASVGERLAALESAEAAQAKLVSQMAEQLQGVARRAAVGYWLGLSGLLLSCVALLLAAFR*
Ga0105347_12234892	3300009609	Soil	MAIVGAIPWKAILKALPAVVLTARELWNQWSSRPGKAPVDPNADVKTQLASVAERLTALESVETKQAILVIQMAEQLQGIARRTAIAYWLGLGGLLLACVALLLVAFR*
Ga0105252_102479691	3300009678	Soil	MMAIAGAIPWKAILKALPMVVLTAREMWTQWSSRPKKAPVDPNADVKTQLASVAERLTALENTETEQARLVSQMAEQLQGIARRTAVAYWLGLSGLLLSCVALLLAAFR*
Ga0105085_11128042	3300009820	Groundwater Sand	MAVVAAIPWRMILKALPIIVVTAKELWNHWSSRPKTAPIDPNADANTQLASVAERLAALESAETDQAKLVSQIAEQLQGIARRASVAYWLGLSGLLLSCVALLLAAFR*
Ga0134127_106011032	3300010399	Terrestrial Soil	MPLPWSTILQALPTVAVTAKDLWNHWSSRKSTPVDPSADVKTQLASIAERLAALESAETEQARLVSQMAEQLQGIARRVSIAYWLGLGGLLVACAALAVALLR*
Ga0137315_10117813	3300011395	Soil	MAVAAAIPWKVILKALPVVVVTAKELWNYWSSRPRTAPVDPNADVTAQLVSVGERLAALESAEAAQAKLVSQMAEQLQAIARRAAVGYWLGLSGLLLSCVALLLAVSR*
Ga0137460_10537661	3300011408	Soil	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNGDVATQLVSVGERLAALESAEAAQAKLVSQMAEQLQAIARRAAIGYWLGLSGLLLSCVALLLAVSR*
Ga0137333_11107591	3300011413	Soil	RHRTMAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADVTTQLASVGERLAALESAEAAQAKLVSQMAEQLQGVARRAAVGYWLGLSGLLLSCVALLLAAFR*
Ga0137446_10340582	3300011419	Soil	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNGDVATQLVSVGERLAALESAEAAQAKLVSQMAEQLQGIARRASVGYWLGLSGLLLACGALLLAVFR*
Ga0137458_10161022	3300011436	Soil	MAVAAAIPWTVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADVTTQLASVGERLAALESAETVQAKLVSQMAEQLQGIARRAAIGYWLGLSGLLLSCGALLLAAFR*
Ga0137451_10340241	3300011438	Soil	KALPMVVVTAKELWNYWSSRPKTAPVDPSADVATQLASVGERLAALESAEAAQAKLVSQMAEQLQGIARRTSIAYWLGLSGLLLSCVALLLAVFR*
Ga0137453_10234392	3300012034	Soil	MAIAAAIPWNVILKALPVVVVTAKELWNYWSSRPRTAPVDPNADVTTQLASVGERLAALESAEAAQAKLVSQMAEQLEGIARRAAIGYWLGLSGLLLSCVALLLAVSR*
Ga0137461_12624311	3300012040	Soil	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADMTTQLVSVGERLTALESAEAAQAKLVSQMAEQLQAIARRASVGYWLGLSGLLLACLALLLAVLR*
Ga0137338_10037312	3300012174	Soil	MAIAAAIPWNVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADVTTQLVSVGERLAALESAEAAQAKLVSQMAEQLQAIARRAAIGYWLGLSGLLLSCGALLLAAFR*
Ga0137447_10150621	3300012226	Soil	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNGDVATQLVSVGERLAALESAEAAQAKLVSQMAEQLQAIARRAAVGYWLGLSGLLLSCVALLLAAFR*
Ga0137447_11177691	3300012226	Soil	MAVAAVIPWKVILQALPTLVVTAKELWNHWSSRPKTAPVDPNADVRTQLASIADRLAALESAETDQAKLVSQMAEQLQGIARRAAVAYWLGLGGLLVACAALLLAVFR*
Ga0137360_115038002	3300012361	Vadose Zone Soil	PTLVVTAKELWNHWSSRPKTAPVDPDGDVRTQLASVAERLAALESAETDQTKLVSQMAEQLQGIARRASVAYWLGLSGLLLACVALLLAALR*
Ga0137318_10040553	3300012671	Soil	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADMTTQLVSVGERLTALESAEAAQAKLVSQMAEQLQAIARRASVGYWLGLSGLLLACVALLLAVSR*
Ga0137339_10004022	3300012673	Soil	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPKTAPVDPKADVTTQLASVGERLAALESAEAAQAKLVSQMAEQLQGIARRAAVGYWLGLGGLLLSCGALLLAAFR*
Ga0137396_105911552	3300012918	Vadose Zone Soil	MTVAAVIPWKEILRHLPTVVVAAKELWNHWASTPKRGVDPNADVRTQLAAAAERLAALEAAETDQAKVVSQIAEQLEAIARRASIAYWLGLSGLLLACVALLLAVFR*
Ga0153915_103726482	3300012931	Freshwater Wetlands	AAIPWKEILKALPTVVVSAKELWTRWSKVKAAPVDPKADVKTQLASVAERVAALERAETDQAKLVSQIAEELQGIARRVSVAYWLGLSGLVLACVAVVMAALR*
Ga0153916_100169703	3300012964	Freshwater Wetlands	MAIAAAIPWKEILKALPTVVVSAKELWTRWSKVKAAPVDPKADVKTQLASVAERVAALERAETDQAKLVSQIAEELQGIARRVSVAYWLGLSGLVLACVAVVMAALR*
Ga0157380_124398752	3300014326	Switchgrass Rhizosphere	MAFAAAIPWKMILEALPTVVVTARQLWKHWSSRPQSGPIDPKADVKTQLTSLAERVAALEGAETDQAKLVSQIADQLQGIAHRASVAYWLGLGGLMLSCAALLVVVFR*
Ga0180066_10047773	3300014873	Soil	MAVAAAIPWKVILKALPVVVVTAKELWNYWSSRPRTAPVDPNGDVATQLVSVGERLAALESAEAAQAKLVSQMAEQLQGIARRAAIGYWLGLSGLLLSCGALLLAAFR*
Ga0180074_10262982	3300014877	Soil	MAVAAAIPWKVILKALPVVVVTAKELWNYWSTRPRTAPVDPNADVTTQLVSVGERLAALESAEAAQAKLVSQMAEQLQAIARRAAIGYWLGLSGLLLSCGALLLAAFR*
Ga0180062_11265822	3300014879	Soil	LPMVVVTAKELWNYWSSRPRTAPVDPNADVTTQLASVGERLAALESAEAAQAKLVSQMAEQLQGVARRAAVGYWLGLSGLLLSCVALLLAAFR*
Ga0180082_11352562	3300014880	Soil	MALAAAIPWKMILEALPTVVVTARQLWKHWSSRPQSGPLDPKADVKTQLASLAERVAALEGAETDQAKLVSQIADQLQGIARRASVAYWLGLGGLVLSCAALLVAVFR*
Ga0180086_10003511	3300014883	Soil	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNGDVATQLVSVGERLAALESAEAAQAKLVSQMAEQLQGIARRAAIGYWLGLSSLLLSCGALL
Ga0180063_11229832	3300014885	Soil	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADVTAQLVSVGERLAALESAEAAQAKLVSQMAEQLQGIARRAAIGYWLGLGGLLLSCGALLLAAFR*
Ga0180071_10094503	3300015249	Soil	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADMTTQLVSVGERLTALESAEAAQAKLVSQMAEQLEGIARRAAVGYWLGLGGLLL
Ga0180071_10478401	3300015249	Soil	MAVAAAIPWKVILKALPMVAVTAKELWNYWSSRPRTAPVDPNGDVATQLVSVGERLAALESAEAAQAKLVSQMAEQLQAIARRAAVGYWLGLSGLLLSCVALLLAVSR*
Ga0180070_10394742	3300015251	Soil	MAVAAAIPWKVILKALPVVVVTAKELWNYWSSRPRTAPVDPNADVTTQLASVGERLTALESAEAAQAKLVSQMAEQLEGIARRASVGYWLGLSGLLLSCGAL
Ga0180089_10193543	3300015254	Soil	MAVAAAIPWKVILKALPVVVVTAKELWNYWSSRPRTAPVDPNADVTTQLVSVGERLEALESAEAAQAKLVSQMAEQLQGIARRAAIGYWLGLSGLLLSCVALLLAVSR*
Ga0184610_10175613	3300017997	Groundwater Sediment	MTVVAAIPWKMILKALPIIVVTAKELWNHWSSRPKAAPIDPNADANTQLASVAERLAALESAETDQAKLVSQIAEQLQGIARRASVAYWLGLSGLLLSCVALLLAAFR
Ga0184634_100771623	3300018031	Groundwater Sediment	MAVVAAIPWKMILKALPIIVVTAKELWNHWSSRPKTAPIDPNADVKTQLASVAERLVALESAETDQAKLVSQIAEQLQGIARRASVAYWLGLSGLLLSCVALLLAAFR
Ga0184623_100029927	3300018056	Groundwater Sediment	MTVVAAIPWKMILKALPIIVVTAKELWNHWSSRPKAAPIDPNADANTQLASVAERLAALESAETDQAELVSQIAEQLQGIARRASVAYWLGLSGLLLSCVALLLAAFR
Ga0184615_100490704	3300018059	Groundwater Sediment	MAVAAAIPWKVILKALPVVVVTAKELWNYWSSRPRTAPVDPNGDVATQLVSVGERLAALESAEAAQAKLVSQMAEQLQGIARRAAIGYWLGLSGLLLSCGALLLAAFR
Ga0184615_100634554	3300018059	Groundwater Sediment	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPKTAPVDPNADVTTQLASVGERLAALESAEAAQAKLVSQMAEQLQGIARRAAIAYWLGLSGLLLSCAALLLAVFR
Ga0184615_104052202	3300018059	Groundwater Sediment	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADVTTQLASVGERLAALESAEAAQAKLVSQMAEQLQGIARRTSIAYWLGLSGLLLSCVALLLAVFR
Ga0184640_105042502	3300018074	Groundwater Sediment	MAVVAAIPWKMILKALPIIVVTAKELWNHWSSRPKTAPIDPNADANTQLASVAERLVALESAETDQAKLVSQIAEQLQGIARRASVAYWLGLSGLLLSCVALLLAAFR
Ga0184633_101879231	3300018077	Groundwater Sediment	AIPWKMILKALPIIVVTAKELWNHWSSRPKTAPIDPNADVKTQLASVAERLVALESAETDQARLVSQIAEQLQGIARRASVAYWLGLSGLLLSCVALLLAAFR
Ga0184629_101282952	3300018084	Groundwater Sediment	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADVTTQLASVGERLAALESAEAAQAKLVSQMAEQLQGIARRAAIAYWLGLSGLLLSCAALLLAVLR
Ga0184629_105980052	3300018084	Groundwater Sediment	MAIAAAIPWNVILKALPVVVVTAKELWNYWSTRPRTAPVDPNADVTTQLVSVGERLAALESAEAAQAKLVSQMAEQLQGIARRAAIGYWLGLSGLLLSCVALLLAAFR
Ga0180111_10689392	3300019244	Groundwater Sediment	MAIAAAIPWNVILKALPVVVVTAKELWNYWSSRPRTAPVDPNADMTTQLVSVWERLTALESAEAAQAKLVSQMAEQLQAIARRASVGYWLGLSGLLLSCGALLLAVSR
Ga0184649_11162012	3300020068	Groundwater Sediment	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADVTTQLASVGERLAALESAEAAQAKLVSQMAEQLQGIARRTSIAYWLGLSGLLLSC
Ga0196977_10263471	3300020146	Soil	VLPTVVVTARDLWQDWSTRPKPALDPNADSKTQVASIAERLSRLESVETEQAKLVSQMAEQLQAIAKRVTVCYWLGLSGVALGVAAVVLAILR
Ga0163150_101978842	3300020195	Freshwater Microbial Mat	MAIAAAIPWKMILEALPAMVVTARQLWKHWSSRPQPAPIDPAADAKTQLVSLAERLATLEGAEAEQARLMSQIAEQLQGIAHRASIAYWLGLSALLLSCFVLLLMILL
Ga0206227_10033243	3300021063	Deep Subsurface Sediment	MAVAAAIPWKVILRALPMVAVTAKELWNYWSSRPRTAPVDPNADLTTQLASVGERLAALESAETEQAKLVSQMAEQLQGIARCAAVGYWLGFSGLLLSCVALLLAAFR
Ga0196978_10956632	3300021067	Soil	MAVGAIPWKVILKVLPTVVVTARDLWQDWSTRPKPALDPNADSKTQVASIAERLSRLESVETEQAKLVSQMAEQLQAIAKRVTVCYWLGLSG
Ga0210379_100077264	3300021081	Groundwater Sediment	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPKTAPVDPSADVATQLASVGERLAALESAEAAQAKLVSQMAEQLQGIARRTSIAYWLGLSGLLLSCVALLLAVFR
Ga0210379_100262372	3300021081	Groundwater Sediment	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADVTTQLASVGERLAALESAEAAQARLVSQMAEQLQGIARRAAIAYWLGLSGLLLSCAALLLAVLR
Ga0210377_100446704	3300021090	Groundwater Sediment	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPKTAPVDPNADVTTQLASVGERLAALESAEAAQAKLVSQMAEQLQGIARRASIAYWLGLSGLLLSCVVLLLAVFR
Ga0210377_103091302	3300021090	Groundwater Sediment	MAVAAAIPWTVILKALPAVVVTAKELWNYWSSRPKTAPVDPNADVRTQLASVAERLAALESAETDQARLVSQMAEQLQGIARRASVAYWLGLSSLLLSCVALLLAALR
Ga0210377_105178202	3300021090	Groundwater Sediment	MAVAAVIPWKVILQALPTLVVTAKELWNHWSSRPKTAPVDPNADVRTQLASVAQRLEALESAETDQTKLVSQMAEQLQGIARRASVAY
Ga0209343_101250783	3300025311	Groundwater	MAVAAAIPWAVILKALPTVVVTAKELWNHWSSRPKTAPVDPNADVKTQLASVAERLVALESAETDQAKLISQIAEQLQGIARRASVAYWLGFSGLLLSCVALLLAAFR
Ga0209431_111063101	3300025313	Soil	MAVVAAIPWAVILKALPTVVLTAKELWNHWSSRPKAAPVDPNADVTTQLASVAERLAALESAETDQAKLISQIAEQLQGIARRASVAYWLGLSALLLSCAALLLAAFR
Ga0209641_104074661	3300025322	Soil	IPWAVILKALPTVVLTAKELWNHWSSRPKAAPVDPNADVTTQLASVAERLAALESAETDQAKLISQIAEQLQGIARRASVAYWLGLSALLLSCAALLLAAFR
Ga0209641_106064371	3300025322	Soil	MAVAAAIPWTVILKALPTVVVTAKELWNHWSSRPKTAPVDPNADVKTQLATVAERLAALESAETDQAKLISQIADQLQGIARRASVAYWLGLSGLLLSCVALLLVAFR
Ga0209640_102054901	3300025324	Soil	MAVAAAIPWAVILKALPTVVVTAKELWNHWSSRPKTAPVDPNADVKTQLASVAERLVALESAETDQARLISEIAEQLQGIARRASVAYWLGLSGLLLSCVALLLAAFR
Ga0209341_108128991	3300025325	Soil	LKALPTVVLTAKELWNHWSSRPKAAPVDPNADVTTQLASVAERLAALESAETDQAKLISQIAEQLQGIARRASVAYWLGLSALLLSCAALLLAAFR
Ga0209342_110799401	3300025326	Soil	MAIAAAIPWKMIIQALPTVVVTAKELWNHWSSKPKTTPVDPNADVRTQLASVAERLAALESAETDQAKLISQIAEQLQGIARRASVAYWLGLGGLLLSCVALLLVAFR
Ga0209131_10009733	3300026320	Grasslands Soil	MAVPVPWSTILQALPTVVVTAKDLWNHWSSRKTAPVDPSADVRTQLASVAERLAALESAETEQARIVSQMAEQLQGIARRVSIAYWLGLGGLLLACAALLVALLR
Ga0208185_11590531	3300027533	Soil	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADVTTQLASVGERLAALESAEAAQAKLVSQMAEQLQGVARRAAVGYWLGLSGLLLSCVALLLAAFR
Ga0209464_100371422	3300027778	Wetland Sediment	MAVAAAIPWKVILKALPMIVVTAKELWDYWSSRPKTAPVDPKADVTTQLASVGERLAALESAETVQAKLVSQMAEQLQGIARRASVGYWLGLSALLLSCAALLLAVFR
Ga0209726_100074949	3300027815	Groundwater	MAVAVAIPWTVILKALPTLVVTARELWNHWSSRPKAAPVGPNADVRTQLASVAERLAALESAETGQAKLVSQMAEQLQGIARRASVAYWLGLSGLLLSCVALLLAVFR
Ga0209726_100677142	3300027815	Groundwater	MAVAAVIPWTVILKALPTIVVTAKELWNHWSSRPKTAPVGPNADVRTQLASVAERLAALESAETDQAKLISQIAEQLQGIARRASVAYWLGLSGLLLSCAALLLAAFR
Ga0209514_100461373	3300027819	Groundwater	MAVVAAIPWAVILKALPTVVLTAKELWNHWSSRPKAAPVDPNADVRTQLASVAERLAALESAETDQARLISQIAEQLQGIACRASVAYWLGLSARLLSCAALLLAAFR
Ga0209514_103473461	3300027819	Groundwater	MAVAAAIPWAVILKALPTIVVTARELWNHWSSRPKAAPVDPNADVKTQLASVAERLVALESAETDQTKLISEIAEQLQGIARRTSVAYWLGLSGLLLSCVALLLAVFR
Ga0209488_1001288211	3300027903	Vadose Zone Soil	MTVAAVIPWKEILRHLPTVVVAAKELWNHWSSRPKRGPVDPNADVRTQLAAVTERLAALEAAETDQAKVVSQIAEQLQAIARRAALAYWLGLGGLLLAGVALLVAVFR
Ga0209488_104004992	3300027903	Vadose Zone Soil	MAVPVPWSTILQALPTVVVTAKDLWNHWSSRKTAPVDPSADVRTQLASVAEKLAALESAETEQARIVSQMAEQLQGIARRVSIAYWLGLSGVLLACAALLVALLR
Ga0209488_106972952	3300027903	Vadose Zone Soil	MTVAAVIPWKEILRHLPTVVVAAKELWNHWASRPKKGVDPNADVRTQLAAVTERLAALEAAETDQAQVVSQIADQLQAIARRASIAYWLGLGGL
Ga0307281_100493862	3300028803	Soil	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPKTAPVDPSADVATQLALVGERLAALESAEAAQAKLVSQMAEQLQGIARRTSIAYWLGLSGLLLSCVALLLAVFR
Ga0307281_100936263	3300028803	Soil	KALPMVVVTAKELWNYWSSRPRTAPVDPNADMTTQLVSVGERLAALESAETVQAKLVSQMAEQLQGVARRAAVGYWLGLSGLLLSCGALLLAIFR
Ga0315275_122395471	3300032401	Sediment	TMIAAIPWKVVVNALPAIVDTARKLFEAWLSRPKVPPVDPNADVRTQLASMMEKFAALELAELDQAKLVSQMAEQLQGIAHRASAAYWLGVGGLLLALAALLLAVLR
Ga0315273_120911401	3300032516	Sediment	MIAAIPWKVVVNALPAIVDTARKLFEAWLSRPKVPPVDPNADVRTQLASMMEKFAALELAELDQAKLVSQMAEQLQGIAHRASAAYWLGVGGLLLALAALLLAVLR
Ga0316620_108049742	3300033480	Soil	MAVAVAIPWRVILKALPTIVVTARELWNQWSSRPKTAPVGPNADVSTQLASVAQRLAALESAETGQAKLVSQIAEQLQGIARRASVAYWLGLGSLLLSCVALLLAAFR
Ga0316620_114087901	3300033480	Soil	MAIAAAIPWKEILKALPTVVVTAKELWNRWSKVKATPVDPKADVKTQLASVAERVATLERAETDQAKLVSQIAEELQGIARRVSVAYWLGLSGLVLACVAVVMAALR
Ga0316620_121087331	3300033480	Soil	MAFVAAIPWKLILKALPTVVVTARELLNNWSSRPKKGLVDPNADVRTQLASVAERLTALESAETDQAKLVSQMAEQLQGIARRASVAYWLGLSGLLLSCVALLLAVFR
Ga0364924_109650_135_461	3300033811	Sediment	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADMTTQLASVGERLTALESAEAAQAKLVSQMAEQLQGIARRAAIGYWLGLSGLLLSCGALLLAAFR
Ga0364926_000795_1225_1551	3300033812	Sediment	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADMTTQLASVGERLTALESAEAAQAKLVSQMAEQLQAIARRASVGYWLGLSGLLLSCGALLLAAFR
Ga0364926_026110_660_986	3300033812	Sediment	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADVTTQLVSVGERLAALESAEAAQAKLVSQMAEQLQAIARRAAIGYWLGLSGLLLSCVALLLAVSR
Ga0364926_071375_432_692	3300033812	Sediment	MAVVAAIPWKMILKALPIIVVTAKELWNHWSSRPKTAPIDPNADVNTQLASVAERLAALESAETDQAKLVSQIAEQLQGIARRASVA
Ga0364928_0005263_346_672	3300033813	Sediment	MAVAAAIPWKVILKALPIVVVTARELWNHWSSRPKAAPVDANADVRTQLASVGERLAALESAETDQAKLVSQMAEQLQGIARRASVAYWLGLSGLLLSCVALLLAVFR
Ga0364928_0064928_2_310	3300033813	Sediment	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPNADMTTQLASVGERLTALESAEAAQAKLVSQMAEQLQAIARRASVGYWLGLSGLLLSCGALL
Ga0364930_0017135_2087_2413	3300033814	Sediment	MAVAAAIPWNVILKALPMIVVTARELWNHWLSRPRTAPVDPNADVKTQLASVGERLAALESAETDQAKLVSQMAEQLQGIARRTSVAYWLGLSGLLLSCVALLLAAFR
Ga0364930_0152326_1_315	3300033814	Sediment	MAVAAAIPWKVILKALPMVAVTAKELWNYWSSRPKTAPVDPNADLTTQLASVGGRLAALESAETDQAKLVSQMAEQLQGIARRAAVGYWLGFSGLLLSCVALLLA
Ga0364946_109969_353_616	3300033815	Sediment	MAVAAAIPWKVILKALPVVVVTAKELWNYWSSRPRTAPVDPNGDVATQLVSVGERLAALESAEAAQAKLVSQMAEQLQAIARRAAIGY
Ga0364937_069100_292_684	3300034113	Sediment	MAVAAAIPWKVILKALPMVVVTAKELWNYWSSRPRTAPVDPHADVATQLVSVGERLAALESAEAAQAKLVSQMAEQLQAIARRAAIGYWLGLSGLLLTCVALLLAVSRKPMEGGCTCRSVRYRMTTKPMFV
Ga0364940_0185504_328_606	3300034164	Sediment	MAVVAAIPWKMILKALPIIVVTAKELWNHWSSRPKTAPIDPNADVNTQLASVAERLAALESAETDQAKLVSQIAEQLQGIARRASVAYWLGLS
Ga0364940_0219457_191_517	3300034164	Sediment	MPVVAAIPWKMILKALPIIVVTAKELWNHWSSRPKTAPIDPNADVKTQLASVAERLAALESAETDQAKLVSQIAEQLQGIARRASVAYWLGLSGLLLSCVALLLAVFR
Ga0364942_0042704_1137_1412	3300034165	Sediment	MIVVTARELWNHWLSRPRTAPVDPNADVKTQLASVGERLAALESAETDQAKLVSQMAEQLQGIARRTSVAYWLGLSGLLLSCVALLLAAFR
Ga0370495_0013932_1258_1584	3300034257	Untreated Peat Soil	MAVAAAIPWNVILKALPTVVVTARELWNHWSSRPKTAPVDPNADLRTQLASVAERLAALESAETDQAKLVSQIAEQLQGIARRASVAYWLGMSGLLLSCVALLLAAFR
Ga0364943_0266976_18_293	3300034354	Sediment	MVVVTAKELWNYWSSRPRTAPVDPNADVTTQLASVGERLAALESAEAAQARLVSQMAEQLQGIARRAAIAYWLGLSGLLLSCAALLLAVLR
Ga0364936_052734_341_667	3300034773	Sediment	MAVAAAIPWKVFLKALPMVVVTAKELWNYWSSRPRTAPVDPNADVTTQLVSVGERLTALESAEAAQAKLVSQMAEQLQGIARRAAIGYWLGLSGLLLSCGALLLAAFR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087944

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences