Metagenome / Metatranscriptome Family F043844

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F043844
Family Type	Metagenome / Metatranscriptome
Number of Sequences	155
Average Sequence Length	43 residues
Representative Sequence	MTRAPWYMRQEFWMVVGTLVVPFFWILPLSRAAYARVSVRRERRF
Number of Associated Samples	127
Number of Associated Scaffolds	155

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.19 %
% of genes near scaffold ends (potentially truncated)	24.52 %
% of genes from short scaffolds (< 2000 bps)	82.58 %
Associated GOLD sequencing projects	122
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (77.419 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (15.484 % of family members)
Environment Ontology (ENVO)	Unclassified (28.387 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (22.581 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 52.05% β-sheet: 0.00% Coil/Unstructured: 47.95%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 155 Family Scaffolds
PF02617	ClpS	34.19
PF04295	GD_AH_C	11.61
PF00441	Acyl-CoA_dh_1	7.74
PF02771	Acyl-CoA_dh_N	5.16
PF02515	CoA_transf_3	4.52
PF02770	Acyl-CoA_dh_M	1.94
PF08666	SAF	1.94
PF00174	Oxidored_molyb	1.29
PF01575	MaoC_dehydratas	0.65
PF00486	Trans_reg_C	0.65
PF13676	TIR_2	0.65
PF00561	Abhydrolase_1	0.65
PF05593	RHS_repeat	0.65
PF00571	CBS	0.65
PF01546	Peptidase_M20	0.65
PF02518	HATPase_c	0.65

COG ID	Name	Functional Category	% Frequency in 155 Family Scaffolds
COG2127	ATP-dependent Clp protease adapter protein ClpS	Posttranslational modification, protein turnover, chaperones [O]	34.19
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	14.84
COG2721	Altronate dehydratase	Carbohydrate transport and metabolism [G]	11.61
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	4.52
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	1.29
COG3915	Uncharacterized conserved protein	Function unknown [S]	1.29
COG3209	Uncharacterized conserved protein RhaS, contains 28 RHS repeats	General function prediction only [R]	0.65

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.42 %
Unclassified	root	N/A	22.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.42 %
Unclassified	root	N/A	22.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.42 %
Unclassified	root	N/A	22.58 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	38.06 %
Unclassified	root	N/A	22.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.29 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	38.06 %
Unclassified	root	N/A	22.58 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.65 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	38.06 %
Unclassified	root	N/A	22.58 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	36.13 %
Unclassified	root	N/A	22.58 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	36.13 %
Unclassified	root	N/A	22.58 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.65 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908044\|A5_c1_ConsensusfromContig1912	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300000787\|JGI11643J11755_11259001	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10104822	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	595	Open in IMG/M
3300000955\|JGI1027J12803_107210232	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	923	Open in IMG/M
3300002120\|C687J26616_10088809	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300002122\|C687J26623_10007078	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2722	Open in IMG/M
3300002245\|JGIcombinedJ26739_101449150	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	581	Open in IMG/M
3300004009\|Ga0055437_10019075	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300004009\|Ga0055437_10039003	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1225	Open in IMG/M
3300004009\|Ga0055437_10157607	Not Available	708	Open in IMG/M
3300004024\|Ga0055436_10064001	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1023	Open in IMG/M
3300004025\|Ga0055433_10065255	Not Available	769	Open in IMG/M
3300004633\|Ga0066395_10001067	All Organisms → cellular organisms → Bacteria	9950	Open in IMG/M
3300004633\|Ga0066395_10086807	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300005166\|Ga0066674_10116431	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300005180\|Ga0066685_10222255	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300005332\|Ga0066388_100892542	All Organisms → cellular organisms → Bacteria	1468	Open in IMG/M
3300005340\|Ga0070689_100122826	All Organisms → cellular organisms → Bacteria	2075	Open in IMG/M
3300005436\|Ga0070713_100317861	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300005445\|Ga0070708_100131532	All Organisms → cellular organisms → Bacteria	2316	Open in IMG/M
3300005467\|Ga0070706_100770001	Not Available	891	Open in IMG/M
3300005468\|Ga0070707_102039368	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	541	Open in IMG/M
3300005536\|Ga0070697_101358950	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	634	Open in IMG/M
3300005546\|Ga0070696_101113671	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	664	Open in IMG/M
3300005829\|Ga0074479_10301197	All Organisms → cellular organisms → Bacteria	6447	Open in IMG/M
3300005829\|Ga0074479_11145619	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	819	Open in IMG/M
3300005833\|Ga0074472_10547382	All Organisms → cellular organisms → Bacteria	2540	Open in IMG/M
3300006031\|Ga0066651_10509963	Not Available	637	Open in IMG/M
3300006046\|Ga0066652_101184509	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	723	Open in IMG/M
3300006796\|Ga0066665_10912489	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	680	Open in IMG/M
3300006854\|Ga0075425_100010500	All Organisms → cellular organisms → Bacteria	9877	Open in IMG/M
3300007255\|Ga0099791_10626910	Not Available	527	Open in IMG/M
3300009038\|Ga0099829_10071943	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2624	Open in IMG/M
3300009038\|Ga0099829_10145584	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1887	Open in IMG/M
3300009089\|Ga0099828_10546278	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1044	Open in IMG/M
3300009089\|Ga0099828_10639565	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300009090\|Ga0099827_11889907	Not Available	520	Open in IMG/M
3300009137\|Ga0066709_100558365	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1623	Open in IMG/M
3300009777\|Ga0105164_10648146	Not Available	521	Open in IMG/M
3300010046\|Ga0126384_10119097	All Organisms → cellular organisms → Bacteria	1982	Open in IMG/M
3300010046\|Ga0126384_10121389	All Organisms → cellular organisms → Bacteria	1966	Open in IMG/M
3300010047\|Ga0126382_10002768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7482	Open in IMG/M
3300010047\|Ga0126382_10070246	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2143	Open in IMG/M
3300010322\|Ga0134084_10293890	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	601	Open in IMG/M
3300010358\|Ga0126370_10225870	All Organisms → cellular organisms → Bacteria	1434	Open in IMG/M
3300010358\|Ga0126370_11772578	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300010359\|Ga0126376_12224580	Not Available	593	Open in IMG/M
3300010359\|Ga0126376_12975844	Not Available	523	Open in IMG/M
3300010391\|Ga0136847_10911870	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2784	Open in IMG/M
3300010391\|Ga0136847_11952788	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	713	Open in IMG/M
3300010391\|Ga0136847_12102697	Not Available	761	Open in IMG/M
3300010398\|Ga0126383_10549672	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300011270\|Ga0137391_10466021	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1073	Open in IMG/M
3300011419\|Ga0137446_1061923	Not Available	851	Open in IMG/M
3300012035\|Ga0137445_1136095	Not Available	503	Open in IMG/M
3300012096\|Ga0137389_10235408	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1535	Open in IMG/M
3300012189\|Ga0137388_10665023	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	968	Open in IMG/M
3300012201\|Ga0137365_10294566	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1203	Open in IMG/M
3300012204\|Ga0137374_10003771	All Organisms → cellular organisms → Bacteria	17977	Open in IMG/M
3300012206\|Ga0137380_10645958	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	922	Open in IMG/M
3300012207\|Ga0137381_10269156	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1482	Open in IMG/M
3300012209\|Ga0137379_10182877	Not Available	2008	Open in IMG/M
3300012209\|Ga0137379_10237978	All Organisms → cellular organisms → Bacteria	1734	Open in IMG/M
3300012673\|Ga0137339_1037017	Not Available	547	Open in IMG/M
3300012685\|Ga0137397_10039247	All Organisms → cellular organisms → Bacteria	3387	Open in IMG/M
3300012922\|Ga0137394_11320334	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	584	Open in IMG/M
3300012925\|Ga0137419_11511735	Not Available	569	Open in IMG/M
3300012927\|Ga0137416_10247659	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1454	Open in IMG/M
3300012931\|Ga0153915_10329333	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1712	Open in IMG/M
3300012931\|Ga0153915_12884976	Not Available	561	Open in IMG/M
3300012944\|Ga0137410_10836101	Not Available	775	Open in IMG/M
3300012944\|Ga0137410_10881886	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300012948\|Ga0126375_11181142	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	635	Open in IMG/M
3300012964\|Ga0153916_10032990	All Organisms → cellular organisms → Bacteria	4522	Open in IMG/M
3300014321\|Ga0075353_1113125	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	648	Open in IMG/M
3300014873\|Ga0180066_1098128	Not Available	603	Open in IMG/M
3300014877\|Ga0180074_1033992	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300014881\|Ga0180094_1007456	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1973	Open in IMG/M
3300014882\|Ga0180069_1011169	All Organisms → cellular organisms → Bacteria	1829	Open in IMG/M
3300014884\|Ga0180104_1014512	All Organisms → cellular organisms → Bacteria	1882	Open in IMG/M
3300015254\|Ga0180089_1084134	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	656	Open in IMG/M
3300015256\|Ga0180073_1028367	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300015264\|Ga0137403_10379442	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1296	Open in IMG/M
3300018052\|Ga0184638_1217595	Not Available	668	Open in IMG/M
3300018059\|Ga0184615_10054005	All Organisms → cellular organisms → Bacteria	2237	Open in IMG/M
3300018059\|Ga0184615_10234886	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1028	Open in IMG/M
3300018059\|Ga0184615_10550124	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	612	Open in IMG/M
3300018059\|Ga0184615_10551507	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	611	Open in IMG/M
3300018061\|Ga0184619_10043631	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1933	Open in IMG/M
3300018063\|Ga0184637_10543571	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300018077\|Ga0184633_10208045	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1010	Open in IMG/M
3300018078\|Ga0184612_10117774	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300018079\|Ga0184627_10643049	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	527	Open in IMG/M
3300018084\|Ga0184629_10442936	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	681	Open in IMG/M
3300018084\|Ga0184629_10508496	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300018482\|Ga0066669_12190311	Not Available	524	Open in IMG/M
3300019249\|Ga0184648_1044599	Not Available	580	Open in IMG/M
3300020067\|Ga0180109_1244076	Not Available	833	Open in IMG/M
3300021051\|Ga0206224_1005399	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300021063\|Ga0206227_1025191	Not Available	1001	Open in IMG/M
3300021090\|Ga0210377_10111178	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1821	Open in IMG/M
3300021090\|Ga0210377_10484392	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	717	Open in IMG/M
3300021090\|Ga0210377_10683823	Not Available	567	Open in IMG/M
3300021333\|Ga0210324_1326172	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1849	Open in IMG/M
3300021437\|Ga0213917_1012576	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300021560\|Ga0126371_10356927	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1598	Open in IMG/M
3300021560\|Ga0126371_11625001	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	772	Open in IMG/M
3300021560\|Ga0126371_12818049	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300025002\|Ga0209001_1002931	All Organisms → cellular organisms → Bacteria	3276	Open in IMG/M
3300025311\|Ga0209343_10215243	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1417	Open in IMG/M
3300025327\|Ga0209751_10595481	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300025538\|Ga0210132_1029023	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	785	Open in IMG/M
3300025551\|Ga0210131_1039544	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300025560\|Ga0210108_1001391	All Organisms → cellular organisms → Bacteria	4266	Open in IMG/M
3300025569\|Ga0210073_1076369	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	714	Open in IMG/M
3300025580\|Ga0210138_1002353	All Organisms → cellular organisms → Bacteria → Proteobacteria	3415	Open in IMG/M
3300025905\|Ga0207685_10692011	Not Available	554	Open in IMG/M
3300025922\|Ga0207646_11376395	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	614	Open in IMG/M
3300025934\|Ga0207686_10045264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2707	Open in IMG/M
3300026351\|Ga0257170_1038609	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	654	Open in IMG/M
3300027645\|Ga0209117_1051989	Not Available	1211	Open in IMG/M
3300027646\|Ga0209466_1003650	All Organisms → cellular organisms → Bacteria	3198	Open in IMG/M
3300027681\|Ga0208991_1174579	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	630	Open in IMG/M
3300027846\|Ga0209180_10598186	Not Available	609	Open in IMG/M
3300028536\|Ga0137415_10052488	All Organisms → cellular organisms → Bacteria	3949	Open in IMG/M
3300028792\|Ga0307504_10008837	All Organisms → cellular organisms → Bacteria	2214	Open in IMG/M
3300031446\|Ga0170820_11816585	Not Available	943	Open in IMG/M
3300031543\|Ga0318516_10320331	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300031720\|Ga0307469_11314288	Not Available	687	Open in IMG/M
3300031720\|Ga0307469_11422125	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	662	Open in IMG/M
3300031751\|Ga0318494_10281741	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300031820\|Ga0307473_10667861	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	726	Open in IMG/M
3300031834\|Ga0315290_10018821	All Organisms → cellular organisms → Bacteria	5328	Open in IMG/M
3300031834\|Ga0315290_10074771	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2808	Open in IMG/M
3300031965\|Ga0326597_10001845	All Organisms → cellular organisms → Bacteria	32722	Open in IMG/M
3300031965\|Ga0326597_10386964	All Organisms → cellular organisms → Bacteria	1559	Open in IMG/M
3300031965\|Ga0326597_10559684	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300031965\|Ga0326597_10985408	Not Available	853	Open in IMG/M
3300031997\|Ga0315278_10267593	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1765	Open in IMG/M
3300032143\|Ga0315292_11225998	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300032163\|Ga0315281_10046637	All Organisms → cellular organisms → Bacteria	5321	Open in IMG/M
3300032164\|Ga0315283_12020048	Not Available	573	Open in IMG/M
3300032177\|Ga0315276_11095097	Not Available	844	Open in IMG/M
3300032180\|Ga0307471_104267989	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	505	Open in IMG/M
3300032256\|Ga0315271_11760448	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300032397\|Ga0315287_11342838	Not Available	816	Open in IMG/M
3300032829\|Ga0335070_10539760	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300033233\|Ga0334722_11008398	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300033407\|Ga0214472_10246111	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1715	Open in IMG/M
3300033417\|Ga0214471_10321432	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300033813\|Ga0364928_0108447	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	659	Open in IMG/M
3300033814\|Ga0364930_0247342	Not Available	603	Open in IMG/M
3300034090\|Ga0326723_0041383	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1936	Open in IMG/M
3300034165\|Ga0364942_0095324	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300034177\|Ga0364932_0350183	Not Available	557	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.71%
Host-Associated	Host-Associated	1.29%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.00%
Aquatic	Environmental → Aquatic	38.71%
Plants	Host-Associated → Plants	1.29%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.48%
Sediment	Environmental → Aquatic → Sediment	16.13%
Freshwater	Environmental → Aquatic → Freshwater	15.48%
Marine	Environmental → Aquatic → Marine	7.10%
Floodplain	Environmental → Terrestrial → Floodplain	2.58%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.29%
Peat	Environmental → Terrestrial → Peat	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	16.13%
Loam	Environmental → Terrestrial → Soil → Loam	12.26%
Lake	Environmental → Aquatic → Freshwater → Lake	8.39%
Wetlands	Environmental → Aquatic → Marine → Wetlands	6.45%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.23%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.58%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.29%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.29%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.65%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.65%
Creek	Environmental → Aquatic → Freshwater → Creek	0.65%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	16.13%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	8.39%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	6.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.52%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.23%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.58%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.94%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.94%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.29%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.29%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.29%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	0.65%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.65%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.65%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.65%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.65%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.39%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.74%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	6.45%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	6.45%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	6.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.52%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.23%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.58%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.58%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.58%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	1.94%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.94%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.29%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.29%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.29%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	0.65%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.65%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.65%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.65%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.65%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.65%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.65%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908044	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002120	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2	Environmental	Open in IMG/M
3300002122	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300004025	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009777	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300012035	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT338_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012673	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT399_2	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300014321	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1	Environmental	Open in IMG/M
3300014873	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200B_16_10D	Environmental	Open in IMG/M
3300014877	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT366_16_10D	Environmental	Open in IMG/M
3300014881	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1Da	Environmental	Open in IMG/M
3300014882	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231B'_16_10D	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300015254	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10D	Environmental	Open in IMG/M
3300015256	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT333_16_10D	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021051	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos A1	Environmental	Open in IMG/M
3300021063	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos D4	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021333	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.191 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021437	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17 MG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025002	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 2 (SPAdes)	Environmental	Open in IMG/M
3300025311	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2 (SPAdes)	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025538	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025551	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025560	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025569	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025580	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026351	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300033813	Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034165	Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17	Environmental	Open in IMG/M
3300034177	Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A5_c1_01702310	2124908044	Soil	MRQEFWMVVGTLVVPFFWILPLSRAAYARVYSRRDRRF
JGI11643J11755_112590011	3300000787	Soil	MTRPPLYMRQEFWMVMGTLFIPFFWILPLSRAAYARVSVR
AF_2010_repII_A001DRAFT_101048222	3300000793	Forest Soil	MTRAPWYARPEFWILMGTLFVPFFWILPLSRAAYARAAIRR
JGI1027J12803_1072102322	3300000955	Soil	MERPAWYMKPEFWMVVGTLVVPFFWLLPLSRAAYARIN
C687J26616_100888091	3300002120	Soil	MTRAPWYMRQEFWMLVGTLVVPFFWILPLSRAAYARVSVRRDRRF*
C687J26623_100070783	3300002122	Soil	MTRAPWYMRQEFWMLVGTLVVPFFWILPLSRAAYARVSLRRDRRF*
JGIcombinedJ26739_1014491502	3300002245	Forest Soil	MTRAPWYMRLEFWIVMATLFVPFFWILPLSRAAYARVS
Ga0055437_100190753	3300004009	Natural And Restored Wetlands	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARVSLLRDRRF*
Ga0055437_100390033	3300004009	Natural And Restored Wetlands	MTRAPWYLRQEFWMVVATLVVPFFWILPLSRAAYAWVSVLRDRHF*
Ga0055437_101576071	3300004009	Natural And Restored Wetlands	MTRAPWYMRQEFWIVLATLIVPFFWILPLSRAAYARVSVRRERRF*
Ga0055436_100640013	3300004024	Natural And Restored Wetlands	MTRAPWYLRQDFWMLVGTLVVPFFWILPLSRAALARVNSRRGRSF*
Ga0055433_100652551	3300004025	Natural And Restored Wetlands	MTRAPWYMRQEFWIVLATLIVPFFWILPLSRAAYARVSIRRERRF*
Ga0066395_100010675	3300004633	Tropical Forest Soil	MTRAPWYARPEFWILMGTLFVPFFWILPLSRAAYARAAIRRERRF*
Ga0066395_100868073	3300004633	Tropical Forest Soil	MTRAPWYARPEFWILMGTLFVPFFWILPLSRAAYARVAIRRERRF*
Ga0066674_101164311	3300005166	Soil	MTRAPWYMRQEFWMVVGTLVVPFFWILPLSRAAYARVYVHRERRF*
Ga0066685_102222553	3300005180	Soil	MTRAPWYMRQEFWMVVGTLVVPFFWSLPLSRAAYARVYVHRERRF*
Ga0066388_1008925421	3300005332	Tropical Forest Soil	MTRAPWYAKPEFWILMGTLFVPFFWILPLSRAAYARVAVRRERRF*
Ga0070689_1001228261	3300005340	Switchgrass Rhizosphere	MTRPPLYMRQEFWMVIGTLFIPFFWILPLSRAAYARVSVRRERRF*
Ga0070713_1003178613	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTRPPLYMRQEFWMVMGTLFIPFFWILPLSRAAYARVSVRRERRF*
Ga0070708_1001315322	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTRAPWYLRQEFWMVVATLVVPFFWILPLSRAAYARVSARRERRF*
Ga0070706_1007700012	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTRAPWYLRQEFWMVVATLVVPFFWILPLSRAAYAYARVSARRERRF*
Ga0070707_1020393681	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MERPAWYMKPEFWMVVGTLVVPFFWLLPLSRAAYARVNVRRDRRF*
Ga0070697_1013589501	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MERAAWYMRPEFWMMVGTLVVPFFWILPLSRAAYARVYVRRERRF*
Ga0070696_1011136711	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MTRPPLYMRQEFWMVIGTLFIPFFWILPLSRAAYARVSVRRER
Ga0074479_103011973	3300005829	Sediment (Intertidal)	MRQEFWMVMGTLFVPFFWILPLGRAAYARASVRRERRRF*
Ga0074479_111456191	3300005829	Sediment (Intertidal)	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARVCLRRGRHF*
Ga0074472_105473824	3300005833	Sediment (Intertidal)	MRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARA
Ga0066651_105099632	3300006031	Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARVSVRRERRF*
Ga0066652_1011845091	3300006046	Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARVYVHRERRF*
Ga0066665_109124892	3300006796	Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYA
Ga0075425_1000105004	3300006854	Populus Rhizosphere	MTRAPWYARPEFWILMGTLFVPFFWILPLSRAAYARVAIRRDRRF*
Ga0099791_106269102	3300007255	Vadose Zone Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARVSVHRERRF*
Ga0099829_100719432	3300009038	Vadose Zone Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARVSVPRERRF*
Ga0099829_101455843	3300009038	Vadose Zone Soil	MRQEFWMVVGTLVVPFFWILPLSRAAYSRVSVRRGRRF*
Ga0099828_105462782	3300009089	Vadose Zone Soil	MTQAPWYLRQEFWIVVPTLVVPFFWILPLSRAAYARVYSRRGRRF*
Ga0099828_106395651	3300009089	Vadose Zone Soil	MTRAPWYLRQEFWMVVGTLVVPFLWILPLSRAAYARVSVRRERRF*
Ga0099827_118899072	3300009090	Vadose Zone Soil	EFWMVVGTLVVPFFWLLPLSRAAYARVNVRRDRRF*
Ga0066709_1005583652	3300009137	Grasslands Soil	MTRAPWYMRQEFWMVVGTLVVPFFWILPLSRAAYARVSVRRERRF*
Ga0105164_106481462	3300009777	Wastewater	MTRAPWYLRQEFWMLVGTLVVPFFWILPLSRAAYARVNSRRGRRF*
Ga0126384_101190973	3300010046	Tropical Forest Soil	MERAAWYMRPEFWMVVGTLVVPFFWLLPLSRAAYARVTVRRDRRF*
Ga0126384_101213891	3300010046	Tropical Forest Soil	MTRAPWYARPEFWILMGTLFVPFFWILPLSRAAYGRVAIRRERRF*
Ga0126382_100027683	3300010047	Tropical Forest Soil	MTRASWYARPEFWILMGTLFVPFFWILPLSRAAYARVAIRRERRF*
Ga0126382_100702462	3300010047	Tropical Forest Soil	MERPAWYMKPEFWMVVGTLVVPFFWLLPLSRAAYARVSVRRDRRF*
Ga0134084_102938901	3300010322	Grasslands Soil	MRQEFWMVVGTLVVPFFWILPLSRAAYARVYVHRERRF*
Ga0126370_102258701	3300010358	Tropical Forest Soil	ATQARRSWMERAAWYMRPEFWMVVGTLVVPFFWLLPLSRAAYARVTVRRDRRF*
Ga0126370_117725781	3300010358	Tropical Forest Soil	MTRAPWYAKPEFWILMGTLFVPFFWILPLSRAAYARVAIRRERRF*
Ga0126376_122245801	3300010359	Tropical Forest Soil	TRRSGMTRAPWYARPEFWILMGTLFVPFFWILPLSRAAYARVAIRRERRF*
Ga0126376_129758441	3300010359	Tropical Forest Soil	WYARPEFWILMGTLFVPFFWILPLSRAAYARVAIRRERRF*
Ga0136847_109118703	3300010391	Freshwater Sediment	MRQEFWMVVAMLVVPFFWILPLSRAAYVRVNSRWGRPF*
Ga0136847_119527882	3300010391	Freshwater Sediment	MRQEFWMVVGTLVVPFFWILPLSRAAYARVNSRRDRGF*
Ga0136847_121026971	3300010391	Freshwater Sediment	MVRARWYLRQEFWMLMGTLFVPFFWILPLGRAAYARVSVRRDRRF*
Ga0126383_105496721	3300010398	Tropical Forest Soil	MTRAPWYARPEFWILMGTLFVPFFWILPLSRAAYAR
Ga0137391_104660213	3300011270	Vadose Zone Soil	MERPAWYMKPEFWMVVGTLVVPFFWLLPLSRAAYARVNVRRDHRF*
Ga0137446_10619231	3300011419	Soil	PTTARRRRMTPAPWYMSQEFWMVVGTLVVPFFWILPLSRAAYARVYLRRGRRF*
Ga0137445_11360952	3300012035	Soil	QEFWIVVGTLVVPFFWILPLSRAAYARAYSGRDRRF*
Ga0137389_102354082	3300012096	Vadose Zone Soil	MVRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARVSVRRERRF*
Ga0137388_106650232	3300012189	Vadose Zone Soil	MVRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARVSVPRERRF*
Ga0137365_102945662	3300012201	Vadose Zone Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYAYARVSARRERRF*
Ga0137374_1000377115	3300012204	Vadose Zone Soil	MTRPPWYLRQEFWIVVGTLVVPFFWILPLSRAAYARVSVRRERRF*
Ga0137380_106459582	3300012206	Vadose Zone Soil	MRQEFWMVLGTLFIPFFWILPLSRAAYARVSIRRERRF*
Ga0137381_102691563	3300012207	Vadose Zone Soil	MERPAWYMKPEFWMVVGTLVVPFFWLLPLSRAAYARVNLRRDRRF*
Ga0137379_101828771	3300012209	Vadose Zone Soil	RPAWYMKPEFWMVVGTLVVPFFWLLPLSRAAYARVNLRRDRRS*
Ga0137379_102379781	3300012209	Vadose Zone Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRLAYARVSVHRERRF*
Ga0137339_10370171	3300012673	Soil	MRHEFWMVLATLVVPFFWILPLSRAAYARVSLRRDSRF*
Ga0137397_100392473	3300012685	Vadose Zone Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRVAYARVSVRRERRF*
Ga0137394_113203341	3300012922	Vadose Zone Soil	MTRAPWYMRQEFWMVVGTLVVPFFWILPLSRLAYARVSVRRERRF*
Ga0137419_115117351	3300012925	Vadose Zone Soil	MTRAPWYMRLEFWMVMATLFVPFFWILPLSRAAYARVSVRRERRF*
Ga0137416_102476592	3300012927	Vadose Zone Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRLAYARVSVRRERRF*
Ga0153915_103293334	3300012931	Freshwater Wetlands	MRRAPWYLRQEFWMLVGTLVVPFFWILPLSRAAFARVSLRRDRRF*
Ga0153915_128849762	3300012931	Freshwater Wetlands	MTRAPWYLRQEFWMLVRTLVVPFFWILPLSRAAYARVNSRRDRRF*
Ga0137410_108361012	3300012944	Vadose Zone Soil	WYMRQEFWMVVGTLVVPFFWILPLSRLAYARVSVRRERRF*
Ga0137410_108818862	3300012944	Vadose Zone Soil	MRLEFWMVMATLFVPFFWILPLSRAAYARVSVRRERRF*
Ga0126375_111811421	3300012948	Tropical Forest Soil	MERPAWYMKPEFWMVVGTLVVPFFWLLPLSRAAYARVS
Ga0153916_100329904	3300012964	Freshwater Wetlands	MTRAPWYRRQEFWMLVGTLVVPFFWILPLSRAAYARVSLRRDRRF*
Ga0075353_11131252	3300014321	Natural And Restored Wetlands	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAVYARVSLRRD*
Ga0180066_10981282	3300014873	Soil	MRQEFWMLVGTLVVPFFWILPLSRAAYARVNSRRDRRF*
Ga0180074_10339921	3300014877	Soil	MTRAPWYLRQEFWMLVATLVVPFFWILPLSRAAYARISLRRNRHF*
Ga0180094_10074562	3300014881	Soil	MRQEFWMVVGTLVVPFFWILPLSRAAYARVNSRRGRRI*
Ga0180069_10111693	3300014882	Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAVYARVYLRRGRRF*
Ga0180104_10145123	3300014884	Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARVNSRRGRRI*
Ga0180089_10841341	3300015254	Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAVYARVYLRRGRRF
Ga0180073_10283673	3300015256	Soil	MRQEFWIVVGTLVVPFFWILPLSRAAYARVYSRRDRRF*
Ga0137403_103794422	3300015264	Vadose Zone Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARVYVRRERRF*
Ga0184638_12175952	3300018052	Groundwater Sediment	MERAAWYMRPEFWMMVGTLVVPFFWILPLSRAAYARVYVRRERRF
Ga0184615_100540053	3300018059	Groundwater Sediment	MTRAPWYMRQEFWIVVGTLVVPFFWILPLSRAAYARVNSRRDRRF
Ga0184615_102348862	3300018059	Groundwater Sediment	MTRAPWYLRQEFWMLVGTLVVPFFWILPLSRAAYARVSLRRARRF
Ga0184615_105501241	3300018059	Groundwater Sediment	MTRAPWYLRQEFWMLVGTLVVPFFWILPLSRAAYARVSARRDRRF
Ga0184615_105515071	3300018059	Groundwater Sediment	MTRAPWYMRQEFWMVVGTLVVPFFWILPLSRAAYARVNSR
Ga0184619_100436312	3300018061	Groundwater Sediment	MTRAPWYMRQEFWMVVGTLVVPFFWILPLSRLAYARVSVRRERRF
Ga0184637_105435712	3300018063	Groundwater Sediment	MVRAPWYLRQEFWMLMGTLFVPFFWILPLGRAAYARASVRRDRRF
Ga0184633_102080452	3300018077	Groundwater Sediment	MVRAPWYLRQEFWMLMGTLFVPFFWILPLGRAAYARLSVRRDRRS
Ga0184612_101177741	3300018078	Groundwater Sediment	MTRAPWYMRQEFWMVVGTLMVPFFWIVPLSRAAYARVNSRRDRRF
Ga0184627_106430492	3300018079	Groundwater Sediment	MTRAPWYMRQEFWMVAGTLVVPFFWILPLSRAAYARVNLRR
Ga0184629_104429361	3300018084	Groundwater Sediment	MRQEFWMVVGTLVVPFFWILPLSRAAYARVSSRRGRRF
Ga0184629_105084962	3300018084	Groundwater Sediment	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARVYLRRGRRF
Ga0066669_121903111	3300018482	Grasslands Soil	MRQEFWMVVGTLVVPFFWILPLSRAAYARVSVRRERRF
Ga0184648_10445992	3300019249	Groundwater Sediment	YLRQEFWMVVGTLVVPFFWLLPLGRAAYARVYLRRGRRF
Ga0180109_12440761	3300020067	Groundwater Sediment	QSMTRVPWYMRQEFWILMGTLFVPFFWILPLSRAAYARVTVRRERRF
Ga0206224_10053991	3300021051	Deep Subsurface Sediment	MTRAPWYMRQEFWMVVGTLVVPFFWILPLSRAAYARVYLRRGRRF
Ga0206227_10251912	3300021063	Deep Subsurface Sediment	MTRAPWYIRQEFWMVVGTLVVPFFWILPLSRAAYARVSLRRDRRF
Ga0210377_101111782	3300021090	Groundwater Sediment	MRQEFWIVVGTLVVPFFWILPLSRAAYARVNSRRDRRF
Ga0210377_104843921	3300021090	Groundwater Sediment	MTRAPWYLRQEFWMLVGTLVVPFFWILPLSRAAYARVSLRRDRRF
Ga0210377_106838232	3300021090	Groundwater Sediment	TTTTARRRRMTRAPWYLRQEFWMLVGTLVVPFFWILPLSRAAYARVSARRDRRF
Ga0210324_13261721	3300021333	Estuarine	MTRAPWYMRQEFWMVMGTLFVPFFWILPLGRAAYARASVRRERRR
Ga0213917_10125763	3300021437	Freshwater	MTRTPWYLRQEFWIVVGTLVLPFFWILPLSRAAYARVGLRRDRRF
Ga0126371_103569273	3300021560	Tropical Forest Soil	MTRAPWYAKPEFWILMGTLFVPFFWILPLSRAAYARVAVRRERRF
Ga0126371_116250011	3300021560	Tropical Forest Soil	MTRAPWYARREFWILMGTLFLPFFWILPLSRAAYARAAIRRERRF
Ga0126371_128180492	3300021560	Tropical Forest Soil	MTRAPWYARPEFWILMGTLFVPFFWILPLSRAAYARVAIRRERRF
Ga0209001_10029314	3300025002	Soil	MTRAPWYMRQEFWMLVGTLVVPFFWILPLSRAAYARVSVRRDRRF
Ga0209343_102152432	3300025311	Groundwater	MTRAPWYMRQEFWMLVGTLVVPFFWILPLSRAAYARVSLRRDSRF
Ga0209751_105954813	3300025327	Soil	QEFWMLVGTLVVPFFWILPLSRAAYARVSVRRDRRF
Ga0210132_10290232	3300025538	Natural And Restored Wetlands	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARVSLLRDRRF
Ga0210131_10395441	3300025551	Natural And Restored Wetlands	MTRAPWYMRQEFWIVLATLIVPFFWILPLSRAAYA
Ga0210108_10013912	3300025560	Natural And Restored Wetlands	MTRAPWYMRQEFWIVLATLIVPFFWILPLSRAAYARVSIRRERRF
Ga0210073_10763691	3300025569	Natural And Restored Wetlands	MTRAPWYMRQEFWIVLATLIVPFFWILPLSRAAYARVSIR
Ga0210138_10023534	3300025580	Natural And Restored Wetlands	MTRAPWYMRQEFWIVLATLIVPFFWILPLSRAAYARVSVRRERRF
Ga0207685_106920112	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MTRAPWYLRQEFWMVVATLVVPFFWILPLSRAAYARVSVRRERRF
Ga0207646_113763951	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MERPAWYMKPEFWMVVGTLVVPFFWLLPLSRAAYARVNVRRDRRF
Ga0207686_100452642	3300025934	Miscanthus Rhizosphere	MTRPPLYMRQEFWMVIGTLFIPFFWILPLSRAAYARVSVRRERRF
Ga0257170_10386091	3300026351	Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARVSVRRERRF
Ga0209117_10519892	3300027645	Forest Soil	MTRAPWYMRQEFWIVVGTLVVPFFWILPLSRAAYARVYSGRDRRS
Ga0209466_10036504	3300027646	Tropical Forest Soil	MTRAPWYARPEFWILMGTLFVPFFWILPLSRAAYARAAIRRERRF
Ga0208991_11745792	3300027681	Forest Soil	MTRAPWYMRQEFWMVVGTLVVPFFWILPLSRAAYARVYVHRERRF
Ga0209180_105981861	3300027846	Vadose Zone Soil	MTRAPWYMRQEFWMVVGTLVVPFFWILPLSRAAYSRVSVRRGRRF
Ga0137415_100524883	3300028536	Vadose Zone Soil	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRLAYARVSVRRERRF
Ga0307504_100088371	3300028792	Soil	MTRAPWYLRQEFWIVVATLVVPFFWILPLSRAAYARVSVRRERRF
Ga0170820_118165852	3300031446	Forest Soil	LPLYMRQEFWMVMGTLFIPFFWILPLSRAAYARVSVRRERRF
Ga0318516_103203311	3300031543	Soil	MTRAPWYARPEFWILMGTLFVPFFWILPLSRAAYA
Ga0307469_113142882	3300031720	Hardwood Forest Soil	MERPAWYMKPEFWMMVGTLVVPFFWILPISRAAYARVYVRRERRF
Ga0307469_114221251	3300031720	Hardwood Forest Soil	MERPAWYMKPEFWMVVGTLVVPFFWLLPLSRAAYARVNLRRDRRF
Ga0318494_102817411	3300031751	Soil	MTRAPWYARPEFWILMGTLFVPFFWILPLSRAAYARAAI
Ga0307473_106678612	3300031820	Hardwood Forest Soil	MTRAPWYMRQEFWMVVGTLVVPFFWLLPLSRAAYARVNSRRDRRF
Ga0315290_100188216	3300031834	Sediment	MTRAPWYMRQEFWVVMGTLFVPFFWILPLGRAAYARVSVRRGRRF
Ga0315290_100747712	3300031834	Sediment	MTRAPWYMRKEFWMVVATLVVPFFWMLPLSRAAYARVYLRRGRRF
Ga0326597_1000184518	3300031965	Soil	MTRTPWYLRQEFWLLVGTLVVPFFWILPVSRAAYARVSVRRDRRF
Ga0326597_103869642	3300031965	Soil	MTRAPWYLRQEFWMLVVALVVPFFWILPLSRAAYARVSLRRDRRF
Ga0326597_105596841	3300031965	Soil	RRMTRPPWYLRQEFWMLVGTLVVPFFWILPLSRAAYARVSVRQDPRF
Ga0326597_109854082	3300031965	Soil	MTRAPWYLRLEFWMLVATLVVPFFWILPLSRAAYARISLRRNRRF
Ga0315278_102675933	3300031997	Sediment	MTQAPWYMRQEVWMVVATLVVPFFWMLPLGRAAYARVNLRRGRRF
Ga0315292_112259982	3300032143	Sediment	MRQEFWVVMGTLFVPFFWILPLGRAAYARVSVRRGRRF
Ga0315281_100466373	3300032163	Sediment	MTQAPWYLRQDFWMLIGTIVVPFFWVLPLSRAVYARVSLRQDRRF
Ga0315283_120200481	3300032164	Sediment	VRRRRMTRAPWYMRKEFWMVVATLVVPFFWMLPLSRAAYARVYLRRGRRF
Ga0315276_110950972	3300032177	Sediment	RQEVWMVVATLVVPFFWMLPLGRAAYARVNLRRGRRF
Ga0307471_1042679891	3300032180	Hardwood Forest Soil	MTRAPWYMRQEFWMVVGTLVVPFFWLLPLSRAAYARVNSRRN
Ga0315271_117604481	3300032256	Sediment	MTRAPWYLRQEFWMVVGTLVVPFFWILPLSRAAYARVYLRRGR
Ga0315287_113428381	3300032397	Sediment	TTTTVRRRRMTQAPWYMRQEVWMVVATLVVPFFWMLPLGRAAYARVNLRRGRRF
Ga0335070_105397603	3300032829	Soil	MTRDPWYLRPDFWMLIGTLVVPFFWLVPLSRAAYARVTVRRNCRF
Ga0334722_110083981	3300033233	Sediment	MTRAPWYLRQEFWMVVGTLVVPFFWVLPLSRAAYACVYQRRGRRF
Ga0214472_102461112	3300033407	Soil	MTRVPWYMRQEFWMLVGTLVVPFFWILPLSRAAYARVSVRRDRRF
Ga0214471_103214323	3300033417	Soil	MTRAPWYMRQEFWMLVGTLVVPFFWILPLSRAAYARVSVRRDRCF
Ga0364928_0108447_71_187	3300033813	Sediment	MRQEFWMVVGTLVVPFFWILPLSRAAYARVNSRRGRPF
Ga0364930_0247342_2_109	3300033814	Sediment	EFWIVVGTLVVPFFWILPLSRAAYARVNLRRGRRF
Ga0326723_0041383_1035_1151	3300034090	Peat Soil	MRQEFWIVLATLIVPFFWILPLSRAAYARVSVRRERRF
Ga0364942_0095324_772_888	3300034165	Sediment	MRQEFWIVVGTLVVPFFWILPLSRAAYARVNLRRGRRF
Ga0364932_0350183_7_123	3300034177	Sediment	MRQEFWMVVGTLVVPFFWILPLSRAAYARVSVRRDRRF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F043844

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences