| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003471 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111407 | Gp0099081 | Ga0059303 |
| Sample Name | Fe-reducing enrichment culture from wetland. Sample 5 with periodic nitrate additions. |
| Sequencing Status | Permanent Draft |
| Sequencing Center | |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 370091479 |
| Sequencing Scaffolds | 36 |
| Novel Protein Genes | 39 |
| Associated Families | 25 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 7 |
| All Organisms → cellular organisms → Bacteria | 9 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Thermoflexibacteraceae → Thermoflexibacter → Thermoflexibacter ruber | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium GWF2_41_31 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Wetland Sediment Microbial Communities From Dorn Creek, Dane County, Wisconsin, Usa, Enriched For Fe-Cycling Cultures |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From Dorn Creek, Dane County, Wisconsin, Usa, Enriched For Fe-Cycling Cultures |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → bayou → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Sediment (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Dorn Creek (Dane County, WI) | |||||||
| Coordinates | Lat. (o) | 43.135131 | Long. (o) | -89.441777 | Alt. (m) | N/A | Depth (m) | 0 to .3048 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002525 | Metagenome / Metatranscriptome | 552 | Y |
| F003908 | Metagenome / Metatranscriptome | 462 | Y |
| F006471 | Metagenome | 372 | Y |
| F017253 | Metagenome | 242 | Y |
| F020377 | Metagenome | 224 | Y |
| F021332 | Metagenome | 219 | Y |
| F025315 | Metagenome | 202 | Y |
| F026170 | Metagenome | 199 | Y |
| F031913 | Metagenome | 181 | Y |
| F032705 | Metagenome | 179 | Y |
| F034975 | Metagenome | 173 | Y |
| F042417 | Metagenome / Metatranscriptome | 158 | Y |
| F054142 | Metagenome | 140 | Y |
| F054639 | Metagenome | 139 | Y |
| F055832 | Metagenome | 138 | Y |
| F057476 | Metagenome / Metatranscriptome | 136 | Y |
| F061953 | Metagenome / Metatranscriptome | 131 | Y |
| F063150 | Metagenome | 130 | Y |
| F065951 | Metagenome | 127 | Y |
| F069434 | Metagenome / Metatranscriptome | 124 | Y |
| F072489 | Metagenome | 121 | Y |
| F076227 | Metagenome | 118 | Y |
| F096119 | Metagenome / Metatranscriptome | 105 | N |
| F096266 | Metagenome | 105 | Y |
| F101444 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| FeGluNO3_10001065 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 41760 | Open in IMG/M |
| FeGluNO3_10002167 | All Organisms → cellular organisms → Bacteria | 8248 | Open in IMG/M |
| FeGluNO3_10006664 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae | 8458 | Open in IMG/M |
| FeGluNO3_10012791 | All Organisms → cellular organisms → Bacteria | 32893 | Open in IMG/M |
| FeGluNO3_10013950 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | 3136 | Open in IMG/M |
| FeGluNO3_10015639 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 7229 | Open in IMG/M |
| FeGluNO3_10023000 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 15900 | Open in IMG/M |
| FeGluNO3_10023001 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes | 3800 | Open in IMG/M |
| FeGluNO3_10027020 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1073 | Open in IMG/M |
| FeGluNO3_10028328 | All Organisms → cellular organisms → Bacteria | 3100 | Open in IMG/M |
| FeGluNO3_10030149 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 3163 | Open in IMG/M |
| FeGluNO3_10030466 | All Organisms → cellular organisms → Bacteria | 1116 | Open in IMG/M |
| FeGluNO3_10038220 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Thermoflexibacteraceae → Thermoflexibacter → Thermoflexibacter ruber | 959 | Open in IMG/M |
| FeGluNO3_10049217 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter | 2741 | Open in IMG/M |
| FeGluNO3_10058658 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 3891 | Open in IMG/M |
| FeGluNO3_10064914 | Not Available | 513 | Open in IMG/M |
| FeGluNO3_10068260 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | 6081 | Open in IMG/M |
| FeGluNO3_10075525 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1381 | Open in IMG/M |
| FeGluNO3_10080872 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 5265 | Open in IMG/M |
| FeGluNO3_10093602 | All Organisms → cellular organisms → Bacteria | 1405 | Open in IMG/M |
| FeGluNO3_10100517 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 2887 | Open in IMG/M |
| FeGluNO3_10111703 | All Organisms → cellular organisms → Bacteria | 3072 | Open in IMG/M |
| FeGluNO3_10120852 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum | 700 | Open in IMG/M |
| FeGluNO3_10141699 | All Organisms → cellular organisms → Bacteria | 669 | Open in IMG/M |
| FeGluNO3_10169129 | Not Available | 951 | Open in IMG/M |
| FeGluNO3_10174975 | All Organisms → cellular organisms → Bacteria | 1520 | Open in IMG/M |
| FeGluNO3_10182862 | All Organisms → cellular organisms → Bacteria | 3306 | Open in IMG/M |
| FeGluNO3_10270637 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium GWF2_41_31 | 766 | Open in IMG/M |
| FeGluNO3_10277609 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 873 | Open in IMG/M |
| FeGluNO3_10306058 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 706 | Open in IMG/M |
| FeGluNO3_10314699 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1390 | Open in IMG/M |
| FeGluNO3_10336004 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1011 | Open in IMG/M |
| FeGluNO3_10346214 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 862 | Open in IMG/M |
| FeGluNO3_10377797 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 617 | Open in IMG/M |
| FeGluNO3_10450511 | Not Available | 559 | Open in IMG/M |
| FeGluNO3_10467378 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 886 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| FeGluNO3_10001065 | FeGluNO3_100010651 | F017253 | KSMNGQFATIMAYNVGSYTQGRTAGDFLSSRKAARAERYPPKTTAAALDG* |
| FeGluNO3_10002167 | FeGluNO3_1000216710 | F017253 | TVKQLFNTTSCRNNVGSYTQGRIAGDFLSSRKIARAERCPPKTTAAALDG* |
| FeGluNO3_10006664 | FeGluNO3_100066642 | F096266 | MIDARLIFLLLTTLLLAILSGIAIVTLRKNRKQKLEEPKYRMLKDD* |
| FeGluNO3_10012791 | FeGluNO3_100127917 | F025315 | MQNYLLVTCEIIIVIVMPLLVLYLKGNWPLRKVIPALMIIPVLWYFTYAPLHELSHAAGTYLVGGKVIDYRLIPRFWLGEFGGAWATPGGFTQSWQQLTSSTFPYLLDIVCLFVAIFVFRRGFSRNPFYVGLAFMLLCLRPAFDFVCESIGFLTGWRGDLYYIQLIAGPFALWPLILISIGLSVYSISSTIRHVVRFSKHENGQNTNETKHNIVQTRRKNEYDQSKSH* |
| FeGluNO3_10013950 | FeGluNO3_100139505 | F055832 | MGRLIRIVVIAAVAWAAWHAGMAAWQQFQFSDEVAKIAQFGPDKDAASVRDAVLTAAARYDLPVTEKDVRIRQEERPASLYIDVTYTAQVEVLPRYFYPWTFTTSAHGWFVPGGRAPLK* |
| FeGluNO3_10015639 | FeGluNO3_100156391 | F017253 | MTAVAFIIAHNVGSYTQGRIAGDFLSSRKADRAKRCTPKTTAAALDG* |
| FeGluNO3_10023000 | FeGluNO3_1002300021 | F069434 | MKRIFDKTTCWEIFDHTDEPERYWALQRAGLHDAARTAAILLTLRHPLRMIPVIIACARCG* |
| FeGluNO3_10023001 | FeGluNO3_100230015 | F069434 | MKHIFDETTCWNIFDHTDGPERYWALQRAGLHDAAQVAALCLTLRHPLRMIPVIIACARCG* |
| FeGluNO3_10024268 | FeGluNO3_100242681 | F006471 | MPIESGEESISSMQLTKLRAAPVLQAEVPPCAPVGQTDGGTASQ |
| FeGluNO3_10027020 | FeGluNO3_100270202 | F101444 | MSLAEAGGLLIATLQAAGVGAVVILVLMIGASLGLDVFKLRPSGPKSLTVRSLDEALGRPESYLPPSTPRGTTDQLGNSQRAS* |
| FeGluNO3_10028328 | FeGluNO3_100283284 | F054639 | MKTARRTLIYAAVLAVPYLTIGLFSGGAYAPRVLRGGLFLLAVAGLASLWMAWRGKRIDSQQDERKDFIINQSMRFSFAVTSVALQAYWAWQFARLGNAGDSSFWLLVALWGSFLGAHAYNSLRH* |
| FeGluNO3_10030149 | FeGluNO3_100301492 | F017253 | MAANVGSYTQGRIAGDFLSSRKEARAERCPPKTTAAALDG* |
| FeGluNO3_10030149 | FeGluNO3_100301494 | F017253 | MLVVSLSLCPKMAYNVGSYTQGRIAGDFLSSRKAARAERCTPQTTAAALDG* |
| FeGluNO3_10030466 | FeGluNO3_100304665 | F017253 | KSMNGQFATIMAYNVGSYTQVRTAGDFLSSRKAARAERCPPKTTAAALDG* |
| FeGluNO3_10038220 | FeGluNO3_100382201 | F017253 | QAATTIGYNVGSYTQGRIAGNFLSSRKAARAERCPPKTTAAELAG* |
| FeGluNO3_10049217 | FeGluNO3_100492172 | F063150 | MRLFLAISMIVFITRLAGATSYPLPVPSPVLEEFISVEAVKFRDIQGTNKPPFIPKSWKLISVSNGEKSNSSNLWFQDPNGSVYLLQGFTSQNKFVLHENMYRIPAR* |
| FeGluNO3_10058658 | FeGluNO3_100586583 | F021332 | MAKTPAAKTSRTSAKSRKPTLRVQVQHDIDQALAQAGIPSAIDSDGWRWMQDPSGKGLVGVVAVTGQREDLSLRVVAPIMPLPTGQAALLRALRRIAEMNYEIPGHSRLAIDSRTIWAVVTHDVGDIGPDDVPNCIFDCVWLAQAGAEWLKGPKPKKVTKKR* |
| FeGluNO3_10064914 | FeGluNO3_100649141 | F054142 | YVPHGDAGKAVLCVDDNRVPDTASIPVTLTLIDGIYRVTPVGDANLRLQLLLQMSGATTIYGPVLGQARDPITGVVITISPPIDPNYPTQGDAMLSGLLASRNFAAGGVYGSVQFSLDGAARWCSPNNWILRPR* |
| FeGluNO3_10068260 | FeGluNO3_100682604 | F034975 | MIHAPVMHPAAHPDQYFRKGTLEGDTPNEPQQCNCHGTALDENGMPCDPVAIAEDVEGAEVDETQG* |
| FeGluNO3_10075525 | FeGluNO3_100755251 | F017253 | CVSSGDRNMAYNVGSYTQGRIAGDFLSSRKAARAERCTPKTTAAELAG* |
| FeGluNO3_10080872 | FeGluNO3_100808723 | F017253 | MAGNVGSYMQGRIVSASWRMSIRKAARAERCPPKTTAAELDG* |
| FeGluNO3_10080872 | FeGluNO3_100808725 | F017253 | MLICRLKMAYNVGSYTQGRIAGDFLPSRKAARAERCPPKTTAAELAW* |
| FeGluNO3_10093602 | FeGluNO3_100936023 | F061953 | MSGPVWKLLKMPGTCDSCGESASELLSVGTVVDYAFRPEYRFCRSCYDRYGGRHDELHQKAVDEQQLPPVVSRPDSVEDVPE* |
| FeGluNO3_10100517 | FeGluNO3_101005176 | F017253 | MFSVVIELSNNIAGNVGSYTQGRIAGDFLSSRKAARAERCPPKTT |
| FeGluNO3_10111703 | FeGluNO3_101117033 | F032705 | RTVKGVDTEKRALYDRYKELTAEARKVAAETEAADVSESDKIRRNNLAFSRVLGEINEVITRMGEATTASYVRVVNQNLGSLTTTAREGDTRDQKDAIERLGGLKDAAVKVVGQISGGRAPEDERTIQAFTMIPAARAVWVYKGDVFYAWAGGIAIDLIPTIFVILLTLGRSREEEEELERQAHAAAHPVPVPRTAVRGGNWPGPAAP* |
| FeGluNO3_10120852 | FeGluNO3_101208521 | F031913 | FPAPFIPPAQEVTLTGRTQAALTKAPEWMSAEMPPGYQTRLWEMERLAADLDAMDRIGRVLWETGEPLLDAVVALFGALKCEVDATSGPTGPIVVKLDESHRLLLVASDAASPIQKTDEGLARAFRAVQFASANDRVVLLASNDPATPPADRPDPALPDALAVLQRMGVAVMPTAALFRLWRLWYEDQPKAQKHLERLHAQDGGLFVAPPR* |
| FeGluNO3_10141699 | FeGluNO3_101416992 | F026170 | EAVSSRMPPMARERSEAEQKAVETILRALAHNLQRLQEEAEMQALRGEVDSGVQKGLAMALREVNDMLPRRKRVK* |
| FeGluNO3_10169129 | FeGluNO3_101691292 | F020377 | MSLSRWWREWQFESAFRRAIRADLARIGKEYEAKFKVLATGNDFDAAMAAYLKACRLPDLRLETLRXSRRLRRRADARGVELPKEWWEHDEEHDLWFLTPEGRHQAEHRLTQERLWTVKQWLQVLTPAVALLVGLAGVVIGLLSMWRWP* |
| FeGluNO3_10174975 | FeGluNO3_101749754 | F076227 | MNMLQELAAQTGAGGWAIASMVFFAVVWLVIAGRVIRARPDDMEARARLALEGESEGEDEALTRGNHG* |
| FeGluNO3_10182862 | FeGluNO3_101828623 | F072489 | MLGXXXXXXXXDPTPQVTVVDVLVDALGLTGVIVAGSFVLGGVVGILLIAYSRWKVARSGDGGSTEHTSLDLSSPAK* |
| FeGluNO3_10270637 | FeGluNO3_102706372 | F017253 | MILIYMAHNVGSYTQGRTAGDFLSSRKAAWAERCTPKTTAAALDG* |
| FeGluNO3_10277609 | FeGluNO3_102776091 | F057476 | MSADENPTEPSEESLREIPEQDFSRAIRPNRYANLRGAFQHAVFVDREVWEHFGSAERILETLRLLVEIAKKRPA* |
| FeGluNO3_10306058 | FeGluNO3_103060581 | F003908 | MDVSMNVTTRLACAAAVLGACGSPSVKHMTQQEMIAADPLPLAKGATWTYNVVIKRFEVDAEKETTRTLTWVTEVIDAKTAGAVTAYRVKGWPSDLADLDQSPPSNETFILRSGNEFLFGASAEPTLEGAQGWFNWPVVDGQRICPNRMVYCWQVSAIDTGYALKFITGPDEQIFEIEPGTGVSR |
| FeGluNO3_10314699 | FeGluNO3_103146992 | F042417 | MSNLPQIAKTQIAKFPEVMALVVTDDAGSLLESSGDIDGEALGAVHVVTTQALTRCGNALGLGPLHRVTITGPRRACLIALHDEEVLGVYVDPTKPIGVFEKKLDTALRR* |
| FeGluNO3_10336004 | FeGluNO3_103360041 | F002525 | RVWAAVDSAWEQEKLEARKMLENAADSHTSGARFVGWRFM* |
| FeGluNO3_10346214 | FeGluNO3_103462141 | F017253 | MAGNVGSYTQGRIAGDFLSSRKDAWAERCTPKTIAAEFADS* |
| FeGluNO3_10377797 | FeGluNO3_103777972 | F065951 | MPIYDQGYRRYVARAPLHRARFWPITREALRLVLAKRAFLGLL |
| FeGluNO3_10450511 | FeGluNO3_104505112 | F096119 | MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKADRA* |
| FeGluNO3_10467378 | FeGluNO3_104673781 | F063150 | MRLTIFLAALLITGAAQATSYVPQFPKGLEQFTTIEGIKFKDASGGASNPPSIPKSWKLISVSSGEKSNSNNLWFQDADGSVYLLQGFTSQNKFIIHEHVYKIPAK* |
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