3300003461: Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P4 sample

Overview

Basic Information

• IMG/M Taxon OID: 3300003461
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110185 | Gp0103975 | Ga0059328
• Sample Name: Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P4 sample
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Campinas
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 178621212
• Sequencing Scaffolds: 30
• Novel Protein Genes: 30
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3
All Organisms → cellular organisms → Bacteria	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Qipengyuania → Qipengyuania soli	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → mine drainage → contaminated soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Mina do Sossego, Brazil
• Coordinates
  • Lat. (^o): -6.426389
  • Long. (^o): -50.051389
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002347	Metagenome / Metatranscriptome	568	Y
F002436	Metagenome / Metatranscriptome	559	Y
F002525	Metagenome / Metatranscriptome	552	Y
F009579	Metagenome / Metatranscriptome	316	Y
F012756	Metagenome / Metatranscriptome	277	Y
F022012	Metagenome	216	Y
F022102	Metagenome / Metatranscriptome	216	Y
F025319	Metagenome	202	Y
F025496	Metagenome / Metatranscriptome	201	Y
F035205	Metagenome	172	Y
F035663	Metagenome / Metatranscriptome	171	Y
F037949	Metagenome	167	Y
F041174	Metagenome / Metatranscriptome	160	Y
F052858	Metagenome / Metatranscriptome	142	Y
F063817	Metagenome	129	Y
F065516	Metagenome / Metatranscriptome	127	Y
F068263	Metagenome	125	Y
F070942	Metagenome / Metatranscriptome	122	Y
F079908	Metagenome / Metatranscriptome	115	Y
F082300	Metagenome	113	Y
F082782	Metagenome / Metatranscriptome	113	Y
F088485	Metagenome	109	Y
F091491	Metagenome	107	Y
F095047	Metagenome / Metatranscriptome	105	Y
F097562	Metagenome / Metatranscriptome	104	Y
F098522	Metagenome / Metatranscriptome	103	Y
F103462	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
P42013CM_1004405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5640
P42013CM_1005438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4559
P42013CM_1005814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4287
P42013CM_1006057	All Organisms → cellular organisms → Bacteria	4143
P42013CM_1007867	All Organisms → cellular organisms → Bacteria	3365
P42013CM_1009052	All Organisms → cellular organisms → Bacteria	3028
P42013CM_1009290	All Organisms → cellular organisms → Bacteria	2976
P42013CM_1009912	All Organisms → cellular organisms → Bacteria	2837
P42013CM_1010785	All Organisms → cellular organisms → Bacteria	2672
P42013CM_1011346	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2581
P42013CM_1018616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1848
P42013CM_1028292	Not Available	1380
P42013CM_1029152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1353
P42013CM_1030080	All Organisms → cellular organisms → Bacteria	1322
P42013CM_1031403	All Organisms → cellular organisms → Bacteria → Proteobacteria	1283
P42013CM_1035486	All Organisms → cellular organisms → Bacteria → Proteobacteria	1177
P42013CM_1036609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1151
P42013CM_1042658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1028
P42013CM_1045585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	978
P42013CM_1045652	All Organisms → cellular organisms → Bacteria	977
P42013CM_1046596	Not Available	963
P42013CM_1052628	All Organisms → cellular organisms → Bacteria	877
P42013CM_1060227	All Organisms → cellular organisms → Bacteria	792
P42013CM_1069166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	712
P42013CM_1072656	All Organisms → cellular organisms → Bacteria → Proteobacteria	685
P42013CM_1080069	Not Available	636
P42013CM_1089838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Qipengyuania → Qipengyuania soli	579
P42013CM_1092638	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	564
P42013CM_1097920	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	536
P42013CM_1098161	Not Available	535

Sequences

Scaffold ID	Protein ID	Family	Sequence
P42013CM_1004405	P42013CM_10044057	F070942	MPQTGRASVGTGVVLIAVGAVLAFAVDVPARVERHVDVLDVGLILIWAGILTLVMQVVMHRPRGSPSRRARTYDSRADEWYERDVHRPGYAGETRRYPTVRDR*
P42013CM_1005438	P42013CM_10054385	F098522	MTEMPDEDVDPRVAEMVVAIRDRFGLRGLRGARWLIEQEIRLAEDALAGLGEDAPPVPPRFAEP*
P42013CM_1005814	P42013CM_10058143	F035205	MAAKGQPASVRLRLTWSQRRAFVLTVAGFQVLVWADALLNDGRFGGNWRTALVGLGLIGMAAATWWVGTSLTRRGIVIHAVPTLVIPWDEVHEIEVEHQLGIKTVVVHHGVTSRRRTRLSAPTTGPLGRDEQFQEKVRVLRSYWAAQRAGQAA*
P42013CM_1006057	P42013CM_10060572	F012756	MRIRAAKREELAPRSKERALSPRQLAALQREEEIRKALGRLKSEDDLIAIELDGSEKVPTMRQAVKKAIAAHKPGTKMAIRGSTIYLSTGNLPGGRGGRRPKAAA*
P42013CM_1007867	P42013CM_10078672	F012756	MRIRAARREELAPKSRERALSPRQLAALQREDEIRRALGRLKTDDDLIAIELDAAEKVPTMRQAVKKAIAAHKPGTQMAIRGSTIYLSMGRLPGGRGGRRPKAAA*
P42013CM_1009052	P42013CM_10090524	F002525	VWAGVDCVWEQEKLEAREMLENAAESLTSGARFVSPLFLSLLID*
P42013CM_1009290	P42013CM_10092901	F082782	VHVTEAACQALSDLLGRRGGDKCLRLSTTQGNYRFILDEPIEQDITFAHEERIVLVVSETVSRDLWGITVDCSLETGKRKLIFRKARQGEPFDTTRDEGDIVPPEWRASEHERLLQEIAEIGRQIASLRGATKNSLREQLHGLEAQKQERWDAIRALWAGDGGWHRRQNGNGVVAKAD*
P42013CM_1009912	P42013CM_10099122	F041174	VTRSDGFDRRPVAVGLTRDGRRVHLPVGNQNLAPVSLDVLRSLLAGLESLLGLLITGSRRENGGTRRDERR*
P42013CM_1010785	P42013CM_10107853	F037949	MRNGQPPERPVFLSHPSERVRARQAQVERYKVKLERTYRSWLHCRSPELKEVLEAKMADYEDRIDHLERLNRALTGTDDG*
P42013CM_1011346	P42013CM_10113462	F002436	VRTSNGLDRRPVAVVVTSDGRRVQMPIEDGSLEVSLLSLIRSLLVGIESVLALITGSRRENRGTRRDGR*
P42013CM_1018616	P42013CM_10186161	F025496	MPSLRDHLIRTPEVRYRNLSAWMAPALGERATPLPDRFFEEAALTVLAHVFRESGPIREQLVYERRRFERLVQLIHRLPERGGGG*
P42013CM_1028292	P42013CM_10282923	F068263	MPIGVEAYRVVDSSDELSSGDIAYLSLARTRIVGEGPPGESFDPVGRIPAYPRPGLLALPHHREVAVDTMFALVVTHSCEIDRQKNMDAAADHFDCRLTVAPIVPEPAVTLIGPDGKEHGAAWAAIEANAPVSSLFLPPIPDVSVLAPGVEALPWPRAFADLRGLATVSRGMVQADRLCGLAPAYLGVLQRQLARFFTWRDLARHELVEALIGRRIVEAIPLNSKGDRLRVALTADDGSSVTVEIRAR*
P42013CM_1029152	P42013CM_10291522	F091491	MLLGKVIKLAMSAQSQFPEDVAARDPELASRLAAEAGRAGLEVPAYVADTVRRFMAHEDGESWTTIVGNIQRSDDPGFAFLSTIVRARLDHRCEQHG*
P42013CM_1030080	P42013CM_10300803	F009579	MNGLELVVAFLAGVVMGGALDFFVLPLLVDAWIDRRRRHGR*
P42013CM_1031403	P42013CM_10314031	F103462	MKRALVLVLLAAGCSKGASDDQCKQLLTHVVDIEFKAAGAAATSDALKAEIAKQKTAVTEAKSKEFLETCKKKMAKARVECALAATELDGD
P42013CM_1035486	P42013CM_10354863	F091491	MLLGKVIKLAMTAQSDFPDDVLLREPDFAPLLEAEATRAGMDVPRFVADTVQRFMAYEDGESWTTIVGNIQRTDDPGYAFISTI
P42013CM_1036609	P42013CM_10366092	F052858	MQRIGEMFHRRPRDDFGEGDHQEYVESGYRDILLVGGAAVVLVGAFVISLF*
P42013CM_1042658	P42013CM_10426582	F025496	MNSLRDHLNRTPEVRSRNLAAWMAPALGERATPLPDRFFEEAALTVLAHVFRDSGPIREALVFERRRFERLVQLIHRLPATGGDG*
P42013CM_1045585	P42013CM_10455852	F035663	VNQQELTEIHQTLTAVHDAVGSLTFPSCDQDDVCELIDRVESELASAHPNVQVIDTFLNSIARSLRAQPEAREACLRIEEVLERTGLPSTWQAGI*
P42013CM_1045652	P42013CM_10456521	F022012	MKKLFMLACVLAFATSAFAEPGKIKASYSGIVEKYDAATRTLTIKKKDKTGEFVITDTSEVLQGKTKADASAFAAGQKVDVEFVMDGAKKLVVKAKVSGSATK*
P42013CM_1046596	P42013CM_10465961	F025319	MNIRNAKNSTAILAGISGLVFALVYVGLEFLHEMPKGISIYGDANTITVWHFPLIWLLAGILFYCVFYAVGTIRGGKVKERAITFSLSVAVAAILTLFWLIPMVAGLVQCFGRSSC*
P42013CM_1052628	P42013CM_10526282	F088485	AGSGATGAAEGRGSRVADAVDVPIADLRHAWEQGLARALGWEDA*
P42013CM_1060227	P42013CM_10602272	F022102	MPPMQDICPSRSKNAHIYIHTLHRACVMLGGERKLAAYLGVSVATVEGWLNGKGRPPDEVFLRCLDLVESSRPQ*
P42013CM_1069166	P42013CM_10691661	F065516	MDMSAIADWFTILFFLWFGLKNFIPALDKGFFATIGAIIALFAAVFIFLSP*
P42013CM_1072656	P42013CM_10726562	F063817	MDPQFTSRYAQQGRRLELMGFAVEDMKPDELYAVIGFLLEKISDDSRAELCQEAPLGAPHSDPPKNDGLVEG*
P42013CM_1080069	P42013CM_10800692	F095047	VDFFEKYRLQDVGPTRTRLAELISIFDAQRHELTVAELDDLREEMETLMARLREERENL*
P42013CM_1089838	P42013CM_10898381	F082300	FNLTQGRTFDTLGWDSWPSAPTPSPTGFRWNATIGRYEVLAKGYAGWSRLEAKPDRFGYTPFEYDVFGGAETKLPFYMLVFAPPDRGPADLYVGNARIFEGGRAHSYFAFGLATEPGDVPVTGTMTCTFGEDEIGWGELVVDLGARTMSGWVHPFWGDARYQLTHTSFPAGGTTFTDTFGTGGVLEGRFFGP
P42013CM_1092638	P42013CM_10926381	F097562	VNRDAKTQTALIALARTRRMQRALAHAYIHRDAPLPTLRVSLGYMTSTACTTDDVTGLGHHMMLLGIARAEGVAYVVEEISERDAPIIYRLWLSGARAGHLVPIHAWYEQASNADEIRARIAAIA
P42013CM_1097920	P42013CM_10979201	F079908	MSVDTPPEPEKTPSLRREALLPNERSRGLGTVAVVCTMAGVASGLALATTLMAMQVADSMSVRTCPYSRVVDVQTVDVRPDHGFLGIRYVFRNGVAEVVSVLPGTPA
P42013CM_1098161	P42013CM_10981611	F002347	MNQPEKSRLLQQIAAIPAMEKGKLSAHSSGRHLKLQRWQEGKNHTRHVSADELPAVQSALAGYVQYRQLTEQYAELVIRETRQNIADAKKKNPSRPKSSWPRKKKSNS*