Metagenome / Metatranscriptome Family F095047

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095047
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	61 residues
Representative Sequence	VEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL
Number of Associated Samples	73
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	59.05 %
% of genes near scaffold ends (potentially truncated)	24.76 %
% of genes from short scaffolds (< 2000 bps)	84.76 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.238 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.952 % of family members)
Environment Ontology (ENVO)	Unclassified (27.619 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.619 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.62% β-sheet: 0.00% Coil/Unstructured: 41.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF02416	TatA_B_E	35.24
PF00089	Trypsin	6.67
PF12848	ABC_tran_Xtn	3.81
PF00005	ABC_tran	2.86
PF02600	DsbB	1.90
PF13481	AAA_25	0.95
PF00664	ABC_membrane	0.95
PF01978	TrmB	0.95
PF09851	SHOCT	0.95
PF01594	AI-2E_transport	0.95
PF00011	HSP20	0.95
PF01694	Rhomboid	0.95
PF04389	Peptidase_M28	0.95
PF06262	Zincin_1	0.95
PF05977	MFS_3	0.95
PF02895	H-kinase_dim	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1826	Twin-arginine protein secretion pathway components TatA and TatB	Intracellular trafficking, secretion, and vesicular transport [U]	35.24
COG0643	Chemotaxis protein histidine kinase CheA	Signal transduction mechanisms [T]	1.90
COG1495	Disulfide bond formation protein DsbB	Posttranslational modification, protein turnover, chaperones [O]	1.90
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.95
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.95
COG3824	Predicted Zn-dependent protease, minimal metalloprotease (MMP)-like domain	Posttranslational modification, protein turnover, chaperones [O]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.24 %
Unclassified	root	N/A	24.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.24 %
Unclassified	root	N/A	24.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.24 %
Unclassified	root	N/A	24.76 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	34.29 %
Unclassified	root	N/A	24.76 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	28.57 %
Unclassified	root	N/A	24.76 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.76 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20.95 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	3.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.76 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	19.05 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.81 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.95 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.76 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	19.05 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.81 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.95 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.76 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	19.05 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.81 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.95 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.76 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	19.05 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.81 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.95 %
unclassified Kribbella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.76 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	19.05 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.81 %
Frankia sp. EAN1pec	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. EAN1pec	0.95 %
Kribbella sp. VKM Ac-2541	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2541	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2365952	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2368447	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300000956\|JGI10216J12902_109852651	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300000956\|JGI10216J12902_116726657	Not Available	1362	Open in IMG/M
3300000956\|JGI10216J12902_117468424	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M
3300003312\|P12013IDBA_1002799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10886	Open in IMG/M
3300003461\|P42013CM_1080069	Not Available	636	Open in IMG/M
3300004156\|Ga0062589_100256731	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300004156\|Ga0062589_100329158	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300004463\|Ga0063356_104214158	Not Available	619	Open in IMG/M
3300004463\|Ga0063356_104924776	Not Available	574	Open in IMG/M
3300004480\|Ga0062592_100687935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	887	Open in IMG/M
3300005338\|Ga0068868_100428304	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300005338\|Ga0068868_102252547	Not Available	519	Open in IMG/M
3300005441\|Ga0070700_100628472	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300005444\|Ga0070694_101960143	Not Available	500	Open in IMG/M
3300005456\|Ga0070678_100131374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1990	Open in IMG/M
3300005456\|Ga0070678_100359484	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300005457\|Ga0070662_101084712	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300005615\|Ga0070702_101102618	Not Available	634	Open in IMG/M
3300005718\|Ga0068866_10425397	Not Available	862	Open in IMG/M
3300006876\|Ga0079217_10145042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1140	Open in IMG/M
3300006876\|Ga0079217_10897608	Not Available	632	Open in IMG/M
3300006880\|Ga0075429_101484094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	590	Open in IMG/M
3300006881\|Ga0068865_100630611	Not Available	909	Open in IMG/M
3300007004\|Ga0079218_10198780	All Organisms → cellular organisms → Bacteria	1527	Open in IMG/M
3300007004\|Ga0079218_12163312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	644	Open in IMG/M
3300009100\|Ga0075418_10661728	Not Available	1125	Open in IMG/M
3300009147\|Ga0114129_10709269	Not Available	1292	Open in IMG/M
3300009156\|Ga0111538_11419654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	875	Open in IMG/M
3300009162\|Ga0075423_12527632	Not Available	561	Open in IMG/M
3300009177\|Ga0105248_11825113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	690	Open in IMG/M
3300009789\|Ga0126307_10000468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25867	Open in IMG/M
3300009789\|Ga0126307_10001746	All Organisms → cellular organisms → Bacteria	14446	Open in IMG/M
3300009789\|Ga0126307_10059010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3008	Open in IMG/M
3300009789\|Ga0126307_10200660	All Organisms → cellular organisms → Bacteria	1600	Open in IMG/M
3300009840\|Ga0126313_10053288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2860	Open in IMG/M
3300010037\|Ga0126304_10027183	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3331	Open in IMG/M
3300010039\|Ga0126309_10018558	All Organisms → cellular organisms → Bacteria	3005	Open in IMG/M
3300010039\|Ga0126309_10023115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2744	Open in IMG/M
3300010039\|Ga0126309_10117601	Not Available	1391	Open in IMG/M
3300010039\|Ga0126309_10205433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1093	Open in IMG/M
3300010042\|Ga0126314_11076279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300010145\|Ga0126321_1030861	Not Available	675	Open in IMG/M
3300011119\|Ga0105246_10477887	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300011332\|Ga0126317_10824269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	596	Open in IMG/M
3300012530\|Ga0136635_10372076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523	Open in IMG/M
3300012902\|Ga0157291_10025325	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300013308\|Ga0157375_11477659	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300013308\|Ga0157375_12870583	Not Available	576	Open in IMG/M
3300015077\|Ga0173483_10794912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. EAN1pec	545	Open in IMG/M
3300015371\|Ga0132258_11776905	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300015371\|Ga0132258_13659710	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
3300015372\|Ga0132256_100142002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2398	Open in IMG/M
3300015372\|Ga0132256_100269568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1777	Open in IMG/M
3300015373\|Ga0132257_100698133	All Organisms → cellular organisms → Bacteria	1260	Open in IMG/M
3300015374\|Ga0132255_106233192	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300018073\|Ga0184624_10405224	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300018422\|Ga0190265_10277792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1735	Open in IMG/M
3300018422\|Ga0190265_11952050	Not Available	693	Open in IMG/M
3300018429\|Ga0190272_13019693	Not Available	522	Open in IMG/M
3300018432\|Ga0190275_10274701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1639	Open in IMG/M
3300018465\|Ga0190269_10068898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1666	Open in IMG/M
3300018465\|Ga0190269_11960249	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300018466\|Ga0190268_10036283	All Organisms → cellular organisms → Bacteria	1811	Open in IMG/M
3300018469\|Ga0190270_10000199	All Organisms → cellular organisms → Bacteria	26381	Open in IMG/M
3300018469\|Ga0190270_10010390	All Organisms → cellular organisms → Bacteria	5243	Open in IMG/M
3300018469\|Ga0190270_10052814	All Organisms → cellular organisms → Bacteria	2838	Open in IMG/M
3300018469\|Ga0190270_10430199	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300018469\|Ga0190270_11821055	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300018476\|Ga0190274_11569723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	750	Open in IMG/M
3300018476\|Ga0190274_13065965	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300018481\|Ga0190271_10035061	All Organisms → cellular organisms → Bacteria	4104	Open in IMG/M
3300018481\|Ga0190271_10060839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3279	Open in IMG/M
3300018481\|Ga0190271_11813261	Not Available	722	Open in IMG/M
3300019884\|Ga0193741_1041802	Not Available	1183	Open in IMG/M
3300025167\|Ga0209642_10120430	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300025901\|Ga0207688_10077717	All Organisms → cellular organisms → Bacteria	1892	Open in IMG/M
3300025908\|Ga0207643_10091083	All Organisms → cellular organisms → Bacteria	1778	Open in IMG/M
3300025931\|Ga0207644_11491510	Not Available	568	Open in IMG/M
3300025934\|Ga0207686_10386769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1062	Open in IMG/M
3300025938\|Ga0207704_10749238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	812	Open in IMG/M
3300026075\|Ga0207708_10885497	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300027647\|Ga0214468_1106738	Not Available	708	Open in IMG/M
3300028592\|Ga0247822_10297696	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300028597\|Ga0247820_11018434	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300030336\|Ga0247826_10192758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1387	Open in IMG/M
3300030336\|Ga0247826_10517629	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300030336\|Ga0247826_10903198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2541	697	Open in IMG/M
3300031226\|Ga0307497_10147907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	972	Open in IMG/M
3300031229\|Ga0299913_10006209	All Organisms → cellular organisms → Bacteria	10327	Open in IMG/M
3300031229\|Ga0299913_10008816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8874	Open in IMG/M
3300031455\|Ga0307505_10466860	Not Available	606	Open in IMG/M
3300031548\|Ga0307408_100355112	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1245	Open in IMG/M
3300031548\|Ga0307408_100705491	Not Available	907	Open in IMG/M
3300031824\|Ga0307413_10819627	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300031854\|Ga0310904_10329926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	977	Open in IMG/M
3300031858\|Ga0310892_10266247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1065	Open in IMG/M
3300031901\|Ga0307406_10664923	Not Available	866	Open in IMG/M
3300031908\|Ga0310900_11391649	Not Available	589	Open in IMG/M
3300032002\|Ga0307416_101250749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	848	Open in IMG/M
3300032013\|Ga0310906_10164010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1312	Open in IMG/M
3300032174\|Ga0307470_10640623	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300032174\|Ga0307470_11177487	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300033550\|Ga0247829_10938363	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.62%
Host-Associated	Host-Associated	32.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.81%
Plants	Host-Associated → Plants	32.38%
Aquatic	Environmental → Aquatic	3.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.10%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.29%
Freshwater	Environmental → Aquatic → Freshwater	2.86%
Sediment	Environmental → Aquatic → Sediment	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.29%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.57%
Loam	Environmental → Terrestrial → Soil → Loam	4.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.81%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.90%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.90%
Ice	Environmental → Aquatic → Freshwater → Ice	0.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.29%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.57%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.81%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.86%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.95%
Mine Drainage	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage	0.95%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.95%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	10.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.86%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.90%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.90%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.95%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.95%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Ore Pile And Mine Drainage Contaminated Soil	0.95%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003312	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P1 sample	Environmental	Open in IMG/M
3300003461	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P4 sample	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012530	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06)	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_23659522	3300000033	Soil	VEFFEKYRLQNVGTTRSRLAELITIFENQRHELTIRELHELRLEMDELTEKLRLERDDL*
ICChiseqgaiiDRAFT_23684473	3300000033	Soil	VEFFEKYRLQNVGATRARLAELITIFENERQELTIRELHDLRDEMDRLTAXLXAGQTD*
JGI10216J12902_1098526513	3300000956	Soil	VEFFEKYRLQNVGATRARLAELITIFENEREDLTIRELHDLRDEMDRLTAKLRAGQMD*
JGI10216J12902_1167266573	3300000956	Soil	MEFFEKYKSQDVGPTRSRLAELIALFEANRHAMTIRELDDLRQEMDELTAQLREERPL*
JGI10216J12902_1174684241	3300000956	Soil	MEFFEKYKSQDVGPTRARLAELIALFEANRQEMTIRELDELRREMDELTAQLREEGPL*
P12013IDBA_10027998	3300003312	Ore Pile And Mine Drainage Contaminated Soil	VDFFEKYRLQDVGPTRARLAELISIFDAQRHELTVAELDDLREEMETLMARLREERENL*
P42013CM_10800692	3300003461	Ore Pile And Mine Drainage Contaminated Soil	VDFFEKYRLQDVGPTRTRLAELISIFDAQRHELTVAELDDLREEMETLMARLREERENL*
Ga0062589_1002567312	3300004156	Soil	VEFFEKYRLQNVGATRARLAELITVFENERHGLTIRELHELREEMDRLTARLRAGQTD*
Ga0062589_1003291582	3300004156	Soil	VEFFEKYRLQNVGATRARLAELITIFENERQELTIRELHDLRDEMDRLTARLQAGQTD*
Ga0063356_1042141581	3300004463	Arabidopsis Thaliana Rhizosphere	MEFFEKYRLQNVGTTRARLAELISIFESQRQNMTIRELEDLRTEMDELTDKLRVERDGL*
Ga0063356_1049247762	3300004463	Arabidopsis Thaliana Rhizosphere	NAGWYHLATARMEFFEKYRLQNVGTTRARLAELITIFESERHSMTIRELEDLRTEMDDLTEKLRIERDGL*
Ga0062592_1006879353	3300004480	Soil	VEFFEKYRLQNVGATRARLAELITIFENERQELTIRELHDLRDEMDRLTARLRAGQTD*
Ga0068868_1004283042	3300005338	Miscanthus Rhizosphere	VEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL*
Ga0068868_1022525472	3300005338	Miscanthus Rhizosphere	VEFFEKYRLQNVGATRARLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQT
Ga0070700_1006284722	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VEFFEKYRSQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL*
Ga0070694_1019601432	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	CWDRTAVEFFEKYRLQNVGATRARLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQTD*
Ga0070678_1001313744	3300005456	Miscanthus Rhizosphere	VEFFEKYRLQNVGATRARLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQTD*
Ga0070678_1003594844	3300005456	Miscanthus Rhizosphere	VEFFEKYRLQNVGTTRARLAELIAIFEGERHELTIRELGELRDEMDELTEKLRAERDGL*
Ga0070662_1010847122	3300005457	Corn Rhizosphere	GWRAAVAGLGTGRAMDRAAAVDRSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL*
Ga0070702_1011026182	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VEFFEKYRLQNVGATRSRLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQTD*
Ga0068866_104253973	3300005718	Miscanthus Rhizosphere	MEFFEKYRLQNVGTTRARLAELISIFESQRLNMTIRELEDLRIEMDELTEKLRIERDGL*
Ga0079217_101450421	3300006876	Agricultural Soil	VVVRQGVNFFEKYRRDDVGPTRARLAELITIFEAERDTMTIRELEELREEIDLLTERLQAERFESERGL*
Ga0079217_108976081	3300006876	Agricultural Soil	MNFFEKYRLQDVGPTRARVAELISIFEAERESMTIRELQELTDEIAELTERLRAERDEL*
Ga0075429_1014840942	3300006880	Populus Rhizosphere	MEFFEKYRLQNVGTTRARLAELITIFETERQSMTIRELEDLRTEMDELTEKLRAERDGL*
Ga0068865_1006306111	3300006881	Miscanthus Rhizosphere	MDRAAAVDRSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL*
Ga0079218_101987803	3300007004	Agricultural Soil	VNFFEKYRRVNVGPTRARLAELISIFEAERDAMTIRELEELREEIDLLTERLQAERFESERGL*
Ga0079218_121633122	3300007004	Agricultural Soil	MEFFEKYRLQNVGTTRARLAELISIFESQRQNMTIRELEDLRTEMDELTERLR
Ga0075418_106617283	3300009100	Populus Rhizosphere	MEFFEKYRLQNVGTTRARLAELITIFETERQNMTIAELEDLRTEMDELTEKLRAER
Ga0114129_107092692	3300009147	Populus Rhizosphere	MEFFEKYRLQNVGTTRARLAELITIFETERQNMTIAELEDLRTEMDELTEKLRAERDGL*
Ga0111538_114196542	3300009156	Populus Rhizosphere	VEFFEKYRLQNVGATRSRLAELITIFENERHELTIRELNDLREEMDRLTAKLRAGQTD*
Ga0075423_125276321	3300009162	Populus Rhizosphere	VEFFEKYRLQNVGATRARLAELITIFENERQDLTIRELHDLRDEMDRLTAKLRAGQID*
Ga0105248_118251131	3300009177	Switchgrass Rhizosphere	VEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKL
Ga0126307_1000046815	3300009789	Serpentine Soil	MEFFEKYRQQNVGTTRARLAELISIFEAEREHMTISELEDLRIEMDELTEKLRVERDGL*
Ga0126307_100017462	3300009789	Serpentine Soil	MEFFEKYRLQNVGTTRARLAELISIFESQRQNMTIRELEDLRTELDELTEQLRAERDD*
Ga0126307_100590102	3300009789	Serpentine Soil	MEFFEKYRLQNVGKTRSRLAELITIFESERQTMTIRELDDLRAEMDELTEKLRVERDAL*
Ga0126307_102006602	3300009789	Serpentine Soil	MEFFEKYRLQNVGTTRARLAELITIFENERHTMTIRELDDLRMEMDELTQKLRVEREHL*
Ga0126313_100532884	3300009840	Serpentine Soil	MEFFEKYRLQNVGKTRARLAELITIFESERQTMTIRELDDLRAEMDELTEKLRVERDGL*
Ga0126304_100271833	3300010037	Serpentine Soil	MEFFEKYRQQNVGTTRARLAELISIFEAEREHMTISELEDLRIEMDELTEKLRVERDGV*
Ga0126309_100185584	3300010039	Serpentine Soil	MEFFEKYRLQNVGTTRARLAELITIFENERQTMTIRELEDLRMEMDELTEKLRVEREHL*
Ga0126309_100231155	3300010039	Serpentine Soil	MNFFEKYRLHDVGPTRTRLAELISIFDTERATMTVTELEELREEIDTLTARLVDERDGGTYTGAS*
Ga0126309_101176011	3300010039	Serpentine Soil	MNFFEKYRLHDVGPTRTRLAELISIFDTERATMTVTELEELREEIDTLTARLVDERDGGTYTGAS
Ga0126309_102054332	3300010039	Serpentine Soil	MEFFEKYRLQNVGTTRARLAELISIFDSQRQNMTIRELDDLRTEMDELTEKLRVERDGL*
Ga0126314_110762792	3300010042	Serpentine Soil	MEFFEKYRLQNVGKTRSRLAELITIFESERQTMTIRELDDLRAEMDELTEKLRVERDGL*
Ga0126321_10308611	3300010145	Soil	MGAADGGTRPGFHLMEFFEKYRLQNVGTTRARLAELISIFESERQSMTIAELEDLREEMDELTEKLRVERDGL*
Ga0105246_104778872	3300011119	Miscanthus Rhizosphere	MDRAAAVDWSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL*
Ga0126317_108242691	3300011332	Soil	PAPARMEFFEKYRLQNVGKTRARLAELITIFESERQTMTIRELDDLRAEMDELTEKLRVERDGL*
Ga0136635_103720762	3300012530	Polar Desert Sand	MEFFQKYRLENVGPTRAWIAELIAIFETEREHMTIREFDELREEIDLLADRLSGERDAD*
Ga0157291_100253252	3300012902	Soil	VEFFEKYRLQNVGATRARLAELITIFENERHQLTIRELHDLRDEMDRLTARLRAGQTD*
Ga0157375_114776591	3300013308	Miscanthus Rhizosphere	VEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAE
Ga0157375_128705832	3300013308	Miscanthus Rhizosphere	VEFFEKYRLQNVGATRARLAELITIVENERHELTIRELHDLREEMDRLTARLRAGQTD*
Ga0173483_107949121	3300015077	Soil	VEFFEKYRLQNVGATRARLAELITVFENERHELTIRELHELREEMDRLTARLRAGQTD*
Ga0132258_117769052	3300015371	Arabidopsis Rhizosphere	VEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTDKLRAERDGL*
Ga0132258_136597102	3300015371	Arabidopsis Rhizosphere	VEFFEKYRLQNVGTTRARLAELISIFESERHELTIRELGELRDEMDELTEKLRIERDGL*
Ga0132256_1001420025	3300015372	Arabidopsis Rhizosphere	VEFFEKYRLQNVGTTRARLAELISIFESERHELTIRELGELRDEMDELTEKLRTERDGL*
Ga0132256_1002695681	3300015372	Arabidopsis Rhizosphere	MAARAAGPEPAVEFFEKYRLQNVGATRARLAELITVFENERHELTIRELHELREEMDRLNAR
Ga0132257_1006981335	3300015373	Arabidopsis Rhizosphere	VEFFEKYRLQNVGTTRARLAEMIAIFESERHDLTIRELRELRDEMDELTEKLRAERDGL*
Ga0132255_1062331922	3300015374	Arabidopsis Rhizosphere	VEFFEKYRLQNVGTTRARLAELIAIFESERHALTIRELRELRDEMDELTDKLRAERDGL*
Ga0184624_104052241	3300018073	Groundwater Sediment	MVAAAARPELAVEFFEKYRLQNVGTTRARLAELITIFENERHELTIRELRELRDEMDD
Ga0190265_102777923	3300018422	Soil	MEFFEKYRLQNVGTTRARLAELITIFENERQEMTIRELEELREEIDELTEKLRLKRERP
Ga0190265_119520502	3300018422	Soil	VNFFEKYRLENVGPTRARLAELITIFDSEREAMTIRELEELREEIDLLTGRLQAERHEAERGL
Ga0190272_130196932	3300018429	Soil	MEFFEKYRLQNVGTTRARLAELITIFENERHEMTIRELEELREEMDELTEKLRAERDG
Ga0190275_102747014	3300018432	Soil	VEFFEKYRLQNVGTTRARLAELITIFENERHALTIRELEDLRNEMDTLTEKLRAERDGY
Ga0190269_100688983	3300018465	Soil	VATQHPDSPMDFFEKYKSQNVGPTRARLAELISIFESQRHEMTIRELEDLRAEIDQLTDTLRAERDGL
Ga0190269_119602491	3300018465	Soil	VEFFQKYRLQNVGATRARLAELITIFELERHTMTIRELEELREEIDMLTDRLRDEREQ
Ga0190268_100362832	3300018466	Soil	MEFFEKYRLQNVGTTRARLAELITIFENERHVMTIRELEELREEMDELTEKLRAERDG
Ga0190270_1000019929	3300018469	Soil	VEFFEKYRLQNVGTTRARLAELITIFENERHELTIRELHELREEMDELTEKLRLERDEL
Ga0190270_100103906	3300018469	Soil	VEFFEKYRLQNVGTTRARLAELITIFENERHELTIRELRELRDEMDELTEKLRAERDAV
Ga0190270_100528144	3300018469	Soil	VEFFEKYRLQNVGTTRARLAELITIFDNQRHELTIRELHELRDEMDELTEKLRAERD
Ga0190270_104301992	3300018469	Soil	MEFFEKYRLQNVGTTRARLAELISIFESQRQNMTIRELDDLRTEMDELTEKLRAERDD
Ga0190270_118210552	3300018469	Soil	VEFFEKYRLHNVGTTRARLAELITIFEAERQSMTTRELEDLRVEIDELTEKLRLERDGA
Ga0190274_115697233	3300018476	Soil	VEFFEKYRLQNVGATRARLAELITIFENERQELTIRELHDLRDEMDRLTARLRAGQTD
Ga0190274_130659651	3300018476	Soil	MVAAAARPELAVEFFEKYRLQNVGTTRARLAELITVFENERHALTIRELNDLRDEMDELTEKLRAERDEL
Ga0190271_100350615	3300018481	Soil	VEFFEKYRLQNVGTTRARLAELITIFENERNELTIRELHELRREMDELTEKLRVERDEL
Ga0190271_100608395	3300018481	Soil	MEFFEKYRLQNVGTTRARLAELITIFENERQEMTIRELEDLRAEIDELTEKLRLEREGL
Ga0190271_118132612	3300018481	Soil	LRAEGCGVEFFEKYRLQNVGTTRARLAELITIFENERHELTIRELEDLRDEMDDLTEKLRLERDGI
Ga0193741_10418023	3300019884	Soil	VVSRGVDFFEKYRLENVGPTRARLAELITIFEAEREAMTIRELEELREEIDLLTDRLQAERLEAERGL
Ga0209642_101204302	3300025167	Soil	VDFFEKYRRQNVGPTRARLAELIAIFEAERASMTIRELEELREEIDLLTERLVAERDAAEQGL
Ga0207688_100777172	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	VEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL
Ga0207643_100910832	3300025908	Miscanthus Rhizosphere	VEFFEKYRLQNVGATRARLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQTD
Ga0207644_114915102	3300025931	Switchgrass Rhizosphere	RRCWDRTAVEFFEKYRLQNVGATRARLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQTD
Ga0207686_103867691	3300025934	Miscanthus Rhizosphere	MDRAAAVDWSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL
Ga0207704_107492381	3300025938	Miscanthus Rhizosphere	TGRAMDRAAAVDRSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL
Ga0207708_108854972	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VEFFEKYRSQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL
Ga0214468_11067383	3300027647	Soil	VDFFEKYRLQDVGPTRARIAELIAMFEAERHQMTVRELEELREEIEQLTGRLRGEREQL
Ga0247822_102976961	3300028592	Soil	VEFFEKYRLQNVGGTRARLAELITIFENERHELTIRELRELRDEMDQLTEKLRAERDGL
Ga0247820_110184342	3300028597	Soil	VDRVAAVDRSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDQLTEKLRAERDGL
Ga0247826_101927581	3300030336	Soil	GVDRVAAVDRSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELGELRDEMDELTEKLRAERDGF
Ga0247826_105176292	3300030336	Soil	MDRAAAVDRSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELGELRAEMDELTEKLRAERDGL
Ga0247826_109031981	3300030336	Soil	MEFFEKYKSQDVGPTRARLAELIALFDANRHEMTIRELDDLRREMDELTEQLREERPL
Ga0307497_101479071	3300031226	Soil	RLQNVGTTRARLAELIAIFESERHELTIRELGELRDEMDELTEKLRAERDGF
Ga0299913_1000620911	3300031229	Soil	VDFFEKYRLQDVGPTRARIAELIAIFEAERHAMTVRELEELREEIELLIVRLQEERERL
Ga0299913_1000881610	3300031229	Soil	VDFFEKYRLQDVGPTRARIAELIAMFEAERHQMTVRELEELREEIEQLTGRLRDEREQL
Ga0307505_104668601	3300031455	Soil	RSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELGELRDEMDALTEKLRTERDGV
Ga0307408_1003551122	3300031548	Rhizosphere	MEFFEKYKSQDVGPTRARLAELIALFEANRQEMTIRELDELRREMDELTAQLREEGPL
Ga0307408_1007054912	3300031548	Rhizosphere	MNFFEKYRLHDVGPTRARLAELISIFESERERMTIRELEELRDEIETLTARLVAERDQ
Ga0307413_108196272	3300031824	Rhizosphere	MEFFEKYRLQNVGTTRARLAELISIFESQRQNMTIRELEDLRTEMDELTERLRAGRDD
Ga0310904_103299261	3300031854	Soil	VEFFEKYRLQNVGATRSRLAELITIFENERHELTIRELQDLREEMDRLTARLRAGQTD
Ga0310892_102662473	3300031858	Soil	VEFFEKYRLQNVGATRSRLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQTD
Ga0307406_106649232	3300031901	Rhizosphere	MEFFEKYRLQNVGKTRSRLAELITIFESERQTMTIRELDDLRAEMDELTEKLRVERDAL
Ga0310900_113916491	3300031908	Soil	VDRVAAVNRSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELGELRDEMDELTEKLRAERDGF
Ga0307416_1012507493	3300032002	Rhizosphere	DPYPWRPSPRCLKGGVEFFEKYRLQNVGTTRARLAELITIFETERQTMTIRELEDLRAEIDELTEKLRVERDGV
Ga0310906_101640104	3300032013	Soil	GGRTGAAVEFFEKYRLQNVGTTRARLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQTD
Ga0307470_106406232	3300032174	Hardwood Forest Soil	MAARRRPDRSPAVEFFEKYRLQNVGTTRARLAELITVFENERHALTIRELHDLRDEMDELTEKLRTERDGL
Ga0307470_111774871	3300032174	Hardwood Forest Soil	VEFFEKYRLQNVGTTRARLAELISIFESERHELTIRELGELRDEMDELTEKLR
Ga0247829_109383631	3300033550	Soil	VEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELGELRDEMDELTE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095047

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences