Basic Information | |
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Family ID | F095047 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 105 |
Average Sequence Length | 61 residues |
Representative Sequence | VEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL |
Number of Associated Samples | 73 |
Number of Associated Scaffolds | 105 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 59.05 % |
% of genes near scaffold ends (potentially truncated) | 24.76 % |
% of genes from short scaffolds (< 2000 bps) | 84.76 % |
Associated GOLD sequencing projects | 69 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.67 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (75.238 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.952 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.619 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (47.619 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 58.62% β-sheet: 0.00% Coil/Unstructured: 41.38% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.67 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Polar Desert Sand Groundwater Sediment Soil Serpentine Soil Ore Pile And Mine Drainage Contaminated Soil Soil Agricultural Soil Soil Hardwood Forest Soil Soil Soil Ore Pile And Mine Drainage Contaminated Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Arabidopsis Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
ICChiseqgaiiDRAFT_23659522 | 3300000033 | Soil | VEFFEKYRLQNVGTTRSRLAELITIFENQRHELTIRELHELRLEMDELTEKLRLERDDL* |
ICChiseqgaiiDRAFT_23684473 | 3300000033 | Soil | VEFFEKYRLQNVGATRARLAELITIFENERQELTIRELHDLRDEMDRLTAXLXAGQTD* |
JGI10216J12902_1098526513 | 3300000956 | Soil | VEFFEKYRLQNVGATRARLAELITIFENEREDLTIRELHDLRDEMDRLTAKLRAGQMD* |
JGI10216J12902_1167266573 | 3300000956 | Soil | MEFFEKYKSQDVGPTRSRLAELIALFEANRHAMTIRELDDLRQEMDELTAQLREERPL* |
JGI10216J12902_1174684241 | 3300000956 | Soil | MEFFEKYKSQDVGPTRARLAELIALFEANRQEMTIRELDELRREMDELTAQLREEGPL* |
P12013IDBA_10027998 | 3300003312 | Ore Pile And Mine Drainage Contaminated Soil | VDFFEKYRLQDVGPTRARLAELISIFDAQRHELTVAELDDLREEMETLMARLREERENL* |
P42013CM_10800692 | 3300003461 | Ore Pile And Mine Drainage Contaminated Soil | VDFFEKYRLQDVGPTRTRLAELISIFDAQRHELTVAELDDLREEMETLMARLREERENL* |
Ga0062589_1002567312 | 3300004156 | Soil | VEFFEKYRLQNVGATRARLAELITVFENERHGLTIRELHELREEMDRLTARLRAGQTD* |
Ga0062589_1003291582 | 3300004156 | Soil | VEFFEKYRLQNVGATRARLAELITIFENERQELTIRELHDLRDEMDRLTARLQAGQTD* |
Ga0063356_1042141581 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MEFFEKYRLQNVGTTRARLAELISIFESQRQNMTIRELEDLRTEMDELTDKLRVERDGL* |
Ga0063356_1049247762 | 3300004463 | Arabidopsis Thaliana Rhizosphere | NAGWYHLATARMEFFEKYRLQNVGTTRARLAELITIFESERHSMTIRELEDLRTEMDDLTEKLRIERDGL* |
Ga0062592_1006879353 | 3300004480 | Soil | VEFFEKYRLQNVGATRARLAELITIFENERQELTIRELHDLRDEMDRLTARLRAGQTD* |
Ga0068868_1004283042 | 3300005338 | Miscanthus Rhizosphere | VEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL* |
Ga0068868_1022525472 | 3300005338 | Miscanthus Rhizosphere | VEFFEKYRLQNVGATRARLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQT |
Ga0070700_1006284722 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | VEFFEKYRSQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL* |
Ga0070694_1019601432 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | CWDRTAVEFFEKYRLQNVGATRARLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQTD* |
Ga0070678_1001313744 | 3300005456 | Miscanthus Rhizosphere | VEFFEKYRLQNVGATRARLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQTD* |
Ga0070678_1003594844 | 3300005456 | Miscanthus Rhizosphere | VEFFEKYRLQNVGTTRARLAELIAIFEGERHELTIRELGELRDEMDELTEKLRAERDGL* |
Ga0070662_1010847122 | 3300005457 | Corn Rhizosphere | GWRAAVAGLGTGRAMDRAAAVDRSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL* |
Ga0070702_1011026182 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | VEFFEKYRLQNVGATRSRLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQTD* |
Ga0068866_104253973 | 3300005718 | Miscanthus Rhizosphere | MEFFEKYRLQNVGTTRARLAELISIFESQRLNMTIRELEDLRIEMDELTEKLRIERDGL* |
Ga0079217_101450421 | 3300006876 | Agricultural Soil | VVVRQGVNFFEKYRRDDVGPTRARLAELITIFEAERDTMTIRELEELREEIDLLTERLQAERFESERGL* |
Ga0079217_108976081 | 3300006876 | Agricultural Soil | MNFFEKYRLQDVGPTRARVAELISIFEAERESMTIRELQELTDEIAELTERLRAERDEL* |
Ga0075429_1014840942 | 3300006880 | Populus Rhizosphere | MEFFEKYRLQNVGTTRARLAELITIFETERQSMTIRELEDLRTEMDELTEKLRAERDGL* |
Ga0068865_1006306111 | 3300006881 | Miscanthus Rhizosphere | MDRAAAVDRSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL* |
Ga0079218_101987803 | 3300007004 | Agricultural Soil | VNFFEKYRRVNVGPTRARLAELISIFEAERDAMTIRELEELREEIDLLTERLQAERFESERGL* |
Ga0079218_121633122 | 3300007004 | Agricultural Soil | MEFFEKYRLQNVGTTRARLAELISIFESQRQNMTIRELEDLRTEMDELTERLR |
Ga0075418_106617283 | 3300009100 | Populus Rhizosphere | MEFFEKYRLQNVGTTRARLAELITIFETERQNMTIAELEDLRTEMDELTEKLRAER |
Ga0114129_107092692 | 3300009147 | Populus Rhizosphere | MEFFEKYRLQNVGTTRARLAELITIFETERQNMTIAELEDLRTEMDELTEKLRAERDGL* |
Ga0111538_114196542 | 3300009156 | Populus Rhizosphere | VEFFEKYRLQNVGATRSRLAELITIFENERHELTIRELNDLREEMDRLTAKLRAGQTD* |
Ga0075423_125276321 | 3300009162 | Populus Rhizosphere | VEFFEKYRLQNVGATRARLAELITIFENERQDLTIRELHDLRDEMDRLTAKLRAGQID* |
Ga0105248_118251131 | 3300009177 | Switchgrass Rhizosphere | VEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKL |
Ga0126307_1000046815 | 3300009789 | Serpentine Soil | MEFFEKYRQQNVGTTRARLAELISIFEAEREHMTISELEDLRIEMDELTEKLRVERDGL* |
Ga0126307_100017462 | 3300009789 | Serpentine Soil | MEFFEKYRLQNVGTTRARLAELISIFESQRQNMTIRELEDLRTELDELTEQLRAERDD* |
Ga0126307_100590102 | 3300009789 | Serpentine Soil | MEFFEKYRLQNVGKTRSRLAELITIFESERQTMTIRELDDLRAEMDELTEKLRVERDAL* |
Ga0126307_102006602 | 3300009789 | Serpentine Soil | MEFFEKYRLQNVGTTRARLAELITIFENERHTMTIRELDDLRMEMDELTQKLRVEREHL* |
Ga0126313_100532884 | 3300009840 | Serpentine Soil | MEFFEKYRLQNVGKTRARLAELITIFESERQTMTIRELDDLRAEMDELTEKLRVERDGL* |
Ga0126304_100271833 | 3300010037 | Serpentine Soil | MEFFEKYRQQNVGTTRARLAELISIFEAEREHMTISELEDLRIEMDELTEKLRVERDGV* |
Ga0126309_100185584 | 3300010039 | Serpentine Soil | MEFFEKYRLQNVGTTRARLAELITIFENERQTMTIRELEDLRMEMDELTEKLRVEREHL* |
Ga0126309_100231155 | 3300010039 | Serpentine Soil | MNFFEKYRLHDVGPTRTRLAELISIFDTERATMTVTELEELREEIDTLTARLVDERDGGTYTGAS* |
Ga0126309_101176011 | 3300010039 | Serpentine Soil | MNFFEKYRLHDVGPTRTRLAELISIFDTERATMTVTELEELREEIDTLTARLVDERDGGTYTGAS |
Ga0126309_102054332 | 3300010039 | Serpentine Soil | MEFFEKYRLQNVGTTRARLAELISIFDSQRQNMTIRELDDLRTEMDELTEKLRVERDGL* |
Ga0126314_110762792 | 3300010042 | Serpentine Soil | MEFFEKYRLQNVGKTRSRLAELITIFESERQTMTIRELDDLRAEMDELTEKLRVERDGL* |
Ga0126321_10308611 | 3300010145 | Soil | MGAADGGTRPGFHLMEFFEKYRLQNVGTTRARLAELISIFESERQSMTIAELEDLREEMDELTEKLRVERDGL* |
Ga0105246_104778872 | 3300011119 | Miscanthus Rhizosphere | MDRAAAVDWSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL* |
Ga0126317_108242691 | 3300011332 | Soil | PAPARMEFFEKYRLQNVGKTRARLAELITIFESERQTMTIRELDDLRAEMDELTEKLRVERDGL* |
Ga0136635_103720762 | 3300012530 | Polar Desert Sand | MEFFQKYRLENVGPTRAWIAELIAIFETEREHMTIREFDELREEIDLLADRLSGERDAD* |
Ga0157291_100253252 | 3300012902 | Soil | VEFFEKYRLQNVGATRARLAELITIFENERHQLTIRELHDLRDEMDRLTARLRAGQTD* |
Ga0157375_114776591 | 3300013308 | Miscanthus Rhizosphere | VEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAE |
Ga0157375_128705832 | 3300013308 | Miscanthus Rhizosphere | VEFFEKYRLQNVGATRARLAELITIVENERHELTIRELHDLREEMDRLTARLRAGQTD* |
Ga0173483_107949121 | 3300015077 | Soil | VEFFEKYRLQNVGATRARLAELITVFENERHELTIRELHELREEMDRLTARLRAGQTD* |
Ga0132258_117769052 | 3300015371 | Arabidopsis Rhizosphere | VEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTDKLRAERDGL* |
Ga0132258_136597102 | 3300015371 | Arabidopsis Rhizosphere | VEFFEKYRLQNVGTTRARLAELISIFESERHELTIRELGELRDEMDELTEKLRIERDGL* |
Ga0132256_1001420025 | 3300015372 | Arabidopsis Rhizosphere | VEFFEKYRLQNVGTTRARLAELISIFESERHELTIRELGELRDEMDELTEKLRTERDGL* |
Ga0132256_1002695681 | 3300015372 | Arabidopsis Rhizosphere | MAARAAGPEPAVEFFEKYRLQNVGATRARLAELITVFENERHELTIRELHELREEMDRLNAR |
Ga0132257_1006981335 | 3300015373 | Arabidopsis Rhizosphere | VEFFEKYRLQNVGTTRARLAEMIAIFESERHDLTIRELRELRDEMDELTEKLRAERDGL* |
Ga0132255_1062331922 | 3300015374 | Arabidopsis Rhizosphere | VEFFEKYRLQNVGTTRARLAELIAIFESERHALTIRELRELRDEMDELTDKLRAERDGL* |
Ga0184624_104052241 | 3300018073 | Groundwater Sediment | MVAAAARPELAVEFFEKYRLQNVGTTRARLAELITIFENERHELTIRELRELRDEMDD |
Ga0190265_102777923 | 3300018422 | Soil | MEFFEKYRLQNVGTTRARLAELITIFENERQEMTIRELEELREEIDELTEKLRLKRERP |
Ga0190265_119520502 | 3300018422 | Soil | VNFFEKYRLENVGPTRARLAELITIFDSEREAMTIRELEELREEIDLLTGRLQAERHEAERGL |
Ga0190272_130196932 | 3300018429 | Soil | MEFFEKYRLQNVGTTRARLAELITIFENERHEMTIRELEELREEMDELTEKLRAERDG |
Ga0190275_102747014 | 3300018432 | Soil | VEFFEKYRLQNVGTTRARLAELITIFENERHALTIRELEDLRNEMDTLTEKLRAERDGY |
Ga0190269_100688983 | 3300018465 | Soil | VATQHPDSPMDFFEKYKSQNVGPTRARLAELISIFESQRHEMTIRELEDLRAEIDQLTDTLRAERDGL |
Ga0190269_119602491 | 3300018465 | Soil | VEFFQKYRLQNVGATRARLAELITIFELERHTMTIRELEELREEIDMLTDRLRDEREQ |
Ga0190268_100362832 | 3300018466 | Soil | MEFFEKYRLQNVGTTRARLAELITIFENERHVMTIRELEELREEMDELTEKLRAERDG |
Ga0190270_1000019929 | 3300018469 | Soil | VEFFEKYRLQNVGTTRARLAELITIFENERHELTIRELHELREEMDELTEKLRLERDEL |
Ga0190270_100103906 | 3300018469 | Soil | VEFFEKYRLQNVGTTRARLAELITIFENERHELTIRELRELRDEMDELTEKLRAERDAV |
Ga0190270_100528144 | 3300018469 | Soil | VEFFEKYRLQNVGTTRARLAELITIFDNQRHELTIRELHELRDEMDELTEKLRAERD |
Ga0190270_104301992 | 3300018469 | Soil | MEFFEKYRLQNVGTTRARLAELISIFESQRQNMTIRELDDLRTEMDELTEKLRAERDD |
Ga0190270_118210552 | 3300018469 | Soil | VEFFEKYRLHNVGTTRARLAELITIFEAERQSMTTRELEDLRVEIDELTEKLRLERDGA |
Ga0190274_115697233 | 3300018476 | Soil | VEFFEKYRLQNVGATRARLAELITIFENERQELTIRELHDLRDEMDRLTARLRAGQTD |
Ga0190274_130659651 | 3300018476 | Soil | MVAAAARPELAVEFFEKYRLQNVGTTRARLAELITVFENERHALTIRELNDLRDEMDELTEKLRAERDEL |
Ga0190271_100350615 | 3300018481 | Soil | VEFFEKYRLQNVGTTRARLAELITIFENERNELTIRELHELRREMDELTEKLRVERDEL |
Ga0190271_100608395 | 3300018481 | Soil | MEFFEKYRLQNVGTTRARLAELITIFENERQEMTIRELEDLRAEIDELTEKLRLEREGL |
Ga0190271_118132612 | 3300018481 | Soil | LRAEGCGVEFFEKYRLQNVGTTRARLAELITIFENERHELTIRELEDLRDEMDDLTEKLRLERDGI |
Ga0193741_10418023 | 3300019884 | Soil | VVSRGVDFFEKYRLENVGPTRARLAELITIFEAEREAMTIRELEELREEIDLLTDRLQAERLEAERGL |
Ga0209642_101204302 | 3300025167 | Soil | VDFFEKYRRQNVGPTRARLAELIAIFEAERASMTIRELEELREEIDLLTERLVAERDAAEQGL |
Ga0207688_100777172 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | VEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL |
Ga0207643_100910832 | 3300025908 | Miscanthus Rhizosphere | VEFFEKYRLQNVGATRARLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQTD |
Ga0207644_114915102 | 3300025931 | Switchgrass Rhizosphere | RRCWDRTAVEFFEKYRLQNVGATRARLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQTD |
Ga0207686_103867691 | 3300025934 | Miscanthus Rhizosphere | MDRAAAVDWSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL |
Ga0207704_107492381 | 3300025938 | Miscanthus Rhizosphere | TGRAMDRAAAVDRSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL |
Ga0207708_108854972 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | VEFFEKYRSQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDELTEKLRAERDGL |
Ga0214468_11067383 | 3300027647 | Soil | VDFFEKYRLQDVGPTRARIAELIAMFEAERHQMTVRELEELREEIEQLTGRLRGEREQL |
Ga0247822_102976961 | 3300028592 | Soil | VEFFEKYRLQNVGGTRARLAELITIFENERHELTIRELRELRDEMDQLTEKLRAERDGL |
Ga0247820_110184342 | 3300028597 | Soil | VDRVAAVDRSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELRELRDEMDQLTEKLRAERDGL |
Ga0247826_101927581 | 3300030336 | Soil | GVDRVAAVDRSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELGELRDEMDELTEKLRAERDGF |
Ga0247826_105176292 | 3300030336 | Soil | MDRAAAVDRSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELGELRAEMDELTEKLRAERDGL |
Ga0247826_109031981 | 3300030336 | Soil | MEFFEKYKSQDVGPTRARLAELIALFDANRHEMTIRELDDLRREMDELTEQLREERPL |
Ga0307497_101479071 | 3300031226 | Soil | RLQNVGTTRARLAELIAIFESERHELTIRELGELRDEMDELTEKLRAERDGF |
Ga0299913_1000620911 | 3300031229 | Soil | VDFFEKYRLQDVGPTRARIAELIAIFEAERHAMTVRELEELREEIELLIVRLQEERERL |
Ga0299913_1000881610 | 3300031229 | Soil | VDFFEKYRLQDVGPTRARIAELIAMFEAERHQMTVRELEELREEIEQLTGRLRDEREQL |
Ga0307505_104668601 | 3300031455 | Soil | RSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELGELRDEMDALTEKLRTERDGV |
Ga0307408_1003551122 | 3300031548 | Rhizosphere | MEFFEKYKSQDVGPTRARLAELIALFEANRQEMTIRELDELRREMDELTAQLREEGPL |
Ga0307408_1007054912 | 3300031548 | Rhizosphere | MNFFEKYRLHDVGPTRARLAELISIFESERERMTIRELEELRDEIETLTARLVAERDQ |
Ga0307413_108196272 | 3300031824 | Rhizosphere | MEFFEKYRLQNVGTTRARLAELISIFESQRQNMTIRELEDLRTEMDELTERLRAGRDD |
Ga0310904_103299261 | 3300031854 | Soil | VEFFEKYRLQNVGATRSRLAELITIFENERHELTIRELQDLREEMDRLTARLRAGQTD |
Ga0310892_102662473 | 3300031858 | Soil | VEFFEKYRLQNVGATRSRLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQTD |
Ga0307406_106649232 | 3300031901 | Rhizosphere | MEFFEKYRLQNVGKTRSRLAELITIFESERQTMTIRELDDLRAEMDELTEKLRVERDAL |
Ga0310900_113916491 | 3300031908 | Soil | VDRVAAVNRSLAVEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELGELRDEMDELTEKLRAERDGF |
Ga0307416_1012507493 | 3300032002 | Rhizosphere | DPYPWRPSPRCLKGGVEFFEKYRLQNVGTTRARLAELITIFETERQTMTIRELEDLRAEIDELTEKLRVERDGV |
Ga0310906_101640104 | 3300032013 | Soil | GGRTGAAVEFFEKYRLQNVGTTRARLAELITIFENERHELTIRELHDLREEMDRLTARLRAGQTD |
Ga0307470_106406232 | 3300032174 | Hardwood Forest Soil | MAARRRPDRSPAVEFFEKYRLQNVGTTRARLAELITVFENERHALTIRELHDLRDEMDELTEKLRTERDGL |
Ga0307470_111774871 | 3300032174 | Hardwood Forest Soil | VEFFEKYRLQNVGTTRARLAELISIFESERHELTIRELGELRDEMDELTEKLR |
Ga0247829_109383631 | 3300033550 | Soil | VEFFEKYRLQNVGTTRARLAELIAIFESERHELTIRELGELRDEMDELTE |
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