Metagenome / Metatranscriptome Family F098522

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098522
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	56 residues
Representative Sequence	MTEATHGTPDEIDPRVAELVVAIRDRFGLRGLRGARWMIDKEIALAEEALAELPT
Number of Associated Samples	86
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.61 %
% of genes near scaffold ends (potentially truncated)	37.86 %
% of genes from short scaffolds (< 2000 bps)	92.23 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.641 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (32.039 % of family members)
Environment Ontology (ENVO)	Unclassified (28.155 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.544 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.78% β-sheet: 0.00% Coil/Unstructured: 54.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00472	RF-1	42.72
PF00248	Aldo_ket_red	30.10
PF00476	DNA_pol_A	2.91
PF06737	Transglycosylas	2.91
PF13683	rve_3	1.94
PF06863	DUF1254	0.97
PF04474	DUF554	0.97
PF00990	GGDEF	0.97
PF00355	Rieske	0.97
PF13602	ADH_zinc_N_2	0.97
PF03405	FA_desaturase_2	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0216	Protein chain release factor RF1	Translation, ribosomal structure and biogenesis [J]	42.72
COG1186	Protein chain release factor PrfB	Translation, ribosomal structure and biogenesis [J]	42.72
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	2.91
COG1811	Uncharacterized membrane protein YqgA, affects biofilm formation	Function unknown [S]	0.97
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.64 %
Unclassified	root	N/A	21.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.64 %
Unclassified	root	N/A	21.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.64 %
Unclassified	root	N/A	21.36 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	70.87 %
Unclassified	root	N/A	21.36 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	52.43 %
Unclassified	root	N/A	21.36 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	36.89 %
Unclassified	root	N/A	21.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.36 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	8.74 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.88 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.97 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.97 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.36 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	7.77 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.88 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.97 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.97 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.36 %
Pseudoclavibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Pseudoclavibacter	7.77 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.88 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.97 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.97 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.36 %
unclassified Pseudoclavibacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Pseudoclavibacter → unclassified Pseudoclavibacter	7.77 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.88 %
Geodermatophilus sabuli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus sabuli	0.97 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.97 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.36 %
Pseudoclavibacter sp. 8L	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Pseudoclavibacter → unclassified Pseudoclavibacter → Pseudoclavibacter sp. 8L	7.77 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.88 %
Streptomyces sp. WM6386	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. WM6386	0.97 %
Geodermatophilus sabuli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus sabuli	0.97 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003312\|P12013IDBA_1083011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	590	Open in IMG/M
3300003313\|P32013IDBA_1023477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2207	Open in IMG/M
3300003461\|P42013CM_1005438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4559	Open in IMG/M
3300003465\|P52013CM_1080228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	688	Open in IMG/M
3300003996\|Ga0055467_10291286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	521	Open in IMG/M
3300004114\|Ga0062593_100891336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	898	Open in IMG/M
3300004114\|Ga0062593_101892536	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300004643\|Ga0062591_101498676	All Organisms → cellular organisms → Bacteria → Terrabacteria group	674	Open in IMG/M
3300005093\|Ga0062594_100278053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1252	Open in IMG/M
3300005327\|Ga0070658_11126005	All Organisms → cellular organisms → Bacteria → Terrabacteria group	683	Open in IMG/M
3300005331\|Ga0070670_101787955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300005333\|Ga0070677_10934529	All Organisms → cellular organisms → Bacteria → Terrabacteria group	503	Open in IMG/M
3300005356\|Ga0070674_100623912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	914	Open in IMG/M
3300005367\|Ga0070667_100850159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	848	Open in IMG/M
3300005548\|Ga0070665_102308011	Not Available	541	Open in IMG/M
3300005564\|Ga0070664_101758204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	588	Open in IMG/M
3300005616\|Ga0068852_100484276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1230	Open in IMG/M
3300006046\|Ga0066652_100078163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2603	Open in IMG/M
3300009176\|Ga0105242_11738825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	661	Open in IMG/M
3300009176\|Ga0105242_12622143	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300009177\|Ga0105248_11157409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Pseudoclavibacter → unclassified Pseudoclavibacter → Pseudoclavibacter sp. 8L	874	Open in IMG/M
3300009840\|Ga0126313_10209947	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1497	Open in IMG/M
3300010375\|Ga0105239_11589613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Pseudoclavibacter → unclassified Pseudoclavibacter → Pseudoclavibacter sp. 8L	756	Open in IMG/M
3300011119\|Ga0105246_11983246	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300011400\|Ga0137312_1082411	Not Available	561	Open in IMG/M
3300012092\|Ga0136621_1428150	Not Available	506	Open in IMG/M
3300012094\|Ga0136638_10030664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2112	Open in IMG/M
3300012094\|Ga0136638_10137437	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1090	Open in IMG/M
3300012094\|Ga0136638_10448433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	611	Open in IMG/M
3300012527\|Ga0136633_1230269	All Organisms → cellular organisms → Bacteria → Terrabacteria group	685	Open in IMG/M
3300012530\|Ga0136635_10004041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4648	Open in IMG/M
3300012668\|Ga0157216_10308099	All Organisms → cellular organisms → Bacteria → Terrabacteria group	724	Open in IMG/M
3300012680\|Ga0136612_10056027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1980	Open in IMG/M
3300012680\|Ga0136612_10123950	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1312	Open in IMG/M
3300012680\|Ga0136612_10301973	All Organisms → cellular organisms → Bacteria → Terrabacteria group	813	Open in IMG/M
3300012680\|Ga0136612_10505941	Not Available	613	Open in IMG/M
3300012681\|Ga0136613_10061260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2155	Open in IMG/M
3300012682\|Ga0136611_10163923	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1533	Open in IMG/M
3300012682\|Ga0136611_10253161	Not Available	1179	Open in IMG/M
3300012682\|Ga0136611_10960322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505	Open in IMG/M
3300012913\|Ga0157298_10343492	Not Available	547	Open in IMG/M
3300012914\|Ga0157297_10160631	Not Available	742	Open in IMG/M
3300012951\|Ga0164300_10075125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1416	Open in IMG/M
3300012958\|Ga0164299_11110410	Not Available	591	Open in IMG/M
3300012985\|Ga0164308_10694962	All Organisms → cellular organisms → Bacteria → Terrabacteria group	876	Open in IMG/M
3300012989\|Ga0164305_12006652	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300013097\|Ga0136639_10371081	Not Available	560	Open in IMG/M
3300013105\|Ga0157369_10687130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1054	Open in IMG/M
3300015371\|Ga0132258_12170365	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1395	Open in IMG/M
3300017695\|Ga0180121_10000586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15421	Open in IMG/M
3300017695\|Ga0180121_10118577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	957	Open in IMG/M
3300017789\|Ga0136617_10013172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7372	Open in IMG/M
3300017965\|Ga0190266_10051816	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1456	Open in IMG/M
3300017965\|Ga0190266_10557227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Pseudoclavibacter → unclassified Pseudoclavibacter → Pseudoclavibacter sp. 8L	683	Open in IMG/M
3300018051\|Ga0184620_10044230	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1228	Open in IMG/M
3300018066\|Ga0184617_1238420	Not Available	544	Open in IMG/M
3300018429\|Ga0190272_10142711	Not Available	1633	Open in IMG/M
3300018429\|Ga0190272_10274154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1286	Open in IMG/M
3300018429\|Ga0190272_11003102	All Organisms → cellular organisms → Bacteria → Terrabacteria group	797	Open in IMG/M
3300018432\|Ga0190275_11955263	Not Available	665	Open in IMG/M
3300018432\|Ga0190275_13258018	Not Available	525	Open in IMG/M
3300018465\|Ga0190269_11834417	Not Available	519	Open in IMG/M
3300018466\|Ga0190268_11661809	Not Available	567	Open in IMG/M
3300018469\|Ga0190270_11165358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	807	Open in IMG/M
3300018920\|Ga0190273_10719878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Pseudoclavibacter → unclassified Pseudoclavibacter → Pseudoclavibacter sp. 8L	777	Open in IMG/M
3300018920\|Ga0190273_12018409	Not Available	535	Open in IMG/M
3300019377\|Ga0190264_10048650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1691	Open in IMG/M
3300020078\|Ga0206352_10121694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1225	Open in IMG/M
3300020082\|Ga0206353_11188513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	697	Open in IMG/M
3300022756\|Ga0222622_10601619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	794	Open in IMG/M
3300023275\|Ga0247776_10137870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	936	Open in IMG/M
3300025559\|Ga0210087_1113551	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300025899\|Ga0207642_10417699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	806	Open in IMG/M
3300025909\|Ga0207705_10813441	All Organisms → cellular organisms → Bacteria → Terrabacteria group	725	Open in IMG/M
3300025920\|Ga0207649_11369764	Not Available	560	Open in IMG/M
3300025934\|Ga0207686_11185511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	625	Open in IMG/M
3300025938\|Ga0207704_11885876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. WM6386	514	Open in IMG/M
3300025944\|Ga0207661_11249476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	683	Open in IMG/M
3300025945\|Ga0207679_11531069	All Organisms → cellular organisms → Bacteria → Terrabacteria group	611	Open in IMG/M
3300026142\|Ga0207698_11748813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Pseudoclavibacter → unclassified Pseudoclavibacter → Pseudoclavibacter sp. 8L	637	Open in IMG/M
3300027647\|Ga0214468_1020043	All Organisms → cellular organisms → Bacteria	1825	Open in IMG/M
3300028587\|Ga0247828_10445827	Not Available	757	Open in IMG/M
3300028708\|Ga0307295_10240641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	519	Open in IMG/M
3300028712\|Ga0307285_10177151	Not Available	592	Open in IMG/M
3300028716\|Ga0307311_10242216	Not Available	535	Open in IMG/M
3300028720\|Ga0307317_10216856	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300028755\|Ga0307316_10200285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	719	Open in IMG/M
3300028768\|Ga0307280_10096039	All Organisms → cellular organisms → Bacteria → Terrabacteria group	981	Open in IMG/M
3300028784\|Ga0307282_10352030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	712	Open in IMG/M
3300028784\|Ga0307282_10624816	Not Available	522	Open in IMG/M
3300028875\|Ga0307289_10226037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	770	Open in IMG/M
3300028876\|Ga0307286_10249090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Pseudoclavibacter → unclassified Pseudoclavibacter → Pseudoclavibacter sp. 8L	651	Open in IMG/M
3300028878\|Ga0307278_10297599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Pseudoclavibacter → unclassified Pseudoclavibacter → Pseudoclavibacter sp. 8L	714	Open in IMG/M
3300028884\|Ga0307308_10657675	Not Available	502	Open in IMG/M
3300028889\|Ga0247827_10275593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	970	Open in IMG/M
3300030336\|Ga0247826_10238232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1270	Open in IMG/M
3300030336\|Ga0247826_10412905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus sabuli	1000	Open in IMG/M
3300031152\|Ga0307501_10249487	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300031184\|Ga0307499_10232848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Pseudoclavibacter → unclassified Pseudoclavibacter → Pseudoclavibacter sp. 8L	581	Open in IMG/M
3300031548\|Ga0307408_100482049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1082	Open in IMG/M
3300031824\|Ga0307413_10712618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	835	Open in IMG/M
3300031903\|Ga0307407_11453799	All Organisms → cellular organisms → Bacteria → Terrabacteria group	541	Open in IMG/M
3300034151\|Ga0364935_0206778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	633	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.73%
Host-Associated	Host-Associated	24.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.43%
Plants	Host-Associated → Plants	24.27%
Aquatic	Environmental → Aquatic	23.30%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.42%
Freshwater	Environmental → Aquatic → Freshwater	17.48%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.85%
Sediment	Environmental → Aquatic → Sediment	3.88%
Marine	Environmental → Aquatic → Marine	1.94%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.97%
Floodplain	Environmental → Terrestrial → Floodplain	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.51%
Ice	Environmental → Aquatic → Freshwater → Ice	17.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.88%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.94%
Loam	Environmental → Terrestrial → Soil → Loam	0.97%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.86%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	17.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.94%
Mine Drainage	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage	1.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.97%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.97%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	32.04%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	17.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.91%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.94%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Ore Pile And Mine Drainage Contaminated Soil	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.94%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.97%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.97%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003312	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P1 sample	Environmental	Open in IMG/M
3300003313	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P3 sample	Environmental	Open in IMG/M
3300003461	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P4 sample	Environmental	Open in IMG/M
3300003465	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011400	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT133_2	Environmental	Open in IMG/M
3300012092	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ445A (23.06)	Environmental	Open in IMG/M
3300012094	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ858 (22.06)	Environmental	Open in IMG/M
3300012527	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ83 (22.06)	Environmental	Open in IMG/M
3300012530	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06)	Environmental	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300012681	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)	Environmental	Open in IMG/M
3300012682	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06)	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013097	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ859 (21.06)	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017695	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023275	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L199-509C-5	Environmental	Open in IMG/M
3300025559	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
P12013IDBA_10830112	3300003312	Ore Pile And Mine Drainage Contaminated Soil	MTEMPEEDVDPRVAEMVVAIRDRFGLRGLRGARWLIEQEIRLAEDALAGLGEGTPPVPPRFAES*
P32013IDBA_10234772	3300003313	Ore Pile And Mine Drainage Contaminated Soil	MTEMPDEDVDPRVAEMVVAIRDRFGLRGLRGARWLIEQEIRLAEDALAGLGEGTPPVPPRFAES*
P42013CM_10054385	3300003461	Ore Pile And Mine Drainage Contaminated Soil	MTEMPDEDVDPRVAEMVVAIRDRFGLRGLRGARWLIEQEIRLAEDALAGLGEDAPPVPPRFAEP*
P52013CM_10802281	3300003465	Ore Pile And Mine Drainage Contaminated Soil	MTEMPDEDVDPRVAEMVVAIRDRFGLRGLRGARWLIEQEIRLAEDALAGLGEDAPPVPPRFAE
Ga0055467_102912862	3300003996	Natural And Restored Wetlands	MSEMPDEDVDPRVAEMVVAIRDRFGLRGLRGARWMIEKEIDLAEAAIADLSRE*
Ga0062593_1008913361	3300004114	Soil	MTEATSGMPDEVDPRVAELVVAIRDRFGLRGLRGARWMIDHEITLAEEALAELPTE*
Ga0062593_1018925362	3300004114	Soil	MTEGTSGTPDEIDPRVAELVVAIRDRFGLRGLRGARAMIDQEIAVAERALAELPTE*
Ga0062591_1014986762	3300004643	Soil	PAGTDIPDEVDPKVAELVMTIRDRFGLRGLRGARWMIDNEIALAEEAMAALAADR*
Ga0062594_1002780532	3300005093	Soil	MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE*
Ga0070658_111260051	3300005327	Corn Rhizosphere	MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEEAMTELSAD*
Ga0070670_1017879552	3300005331	Switchgrass Rhizosphere	FGQPAPTREHDMTEGTSGTPDEIDPRVVELVVAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE*
Ga0070677_109345291	3300005333	Miscanthus Rhizosphere	PDEVDPRVAELVVAIRDRFGLRGMRGAHWMLEQEIALAEEAMAELSAD*
Ga0070674_1006239122	3300005356	Miscanthus Rhizosphere	MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGAHWMLEQEIALAEEATAELSAD*
Ga0070667_1008501591	3300005367	Switchgrass Rhizosphere	MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIA
Ga0070665_1023080111	3300005548	Switchgrass Rhizosphere	MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIAL
Ga0070664_1017582042	3300005564	Corn Rhizosphere	MTEGTSGTPDEIDPRVAELVVAIRDRFGLRGLRGAQWMIDKEIALAEEALAELPTE*
Ga0068852_1004842761	3300005616	Corn Rhizosphere	EHQMTEATRGTPDEIDPRVVELVVAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE*
Ga0066652_1000781634	3300006046	Soil	MTEATRGTPDEIDPRVAELVVAIRDRFGLRGLRGARWMIDQEIALAEDALADLPTE*
Ga0105242_117388252	3300009176	Miscanthus Rhizosphere	MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIAVAEAALAELPTE*
Ga0105242_126221431	3300009176	Miscanthus Rhizosphere	MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGAHWMLEQEIALAEEAMAELSAD*
Ga0105248_111574091	3300009177	Switchgrass Rhizosphere	DEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE*
Ga0126313_102099471	3300009840	Serpentine Soil	QATDVPDEVDPKVAELVMTIRDRFGLRGLRGAGWMIDQEIRLAEEALADLSPDA*
Ga0105239_115896131	3300010375	Corn Rhizosphere	DKPDEIDPRVVELVVAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE*
Ga0105246_119832462	3300011119	Miscanthus Rhizosphere	MTEATHGTPDEIDPRVAELVVAIRDRFGLRGLRGARWMIDKEIALAEEALAELPT
Ga0137312_10824112	3300011400	Soil	MTDATGSAVPDEVDPLVAELVMAIRDRFGLRGLRGAHRMIESEIAIAEKALEGLPTD*
Ga0136621_14281501	3300012092	Polar Desert Sand	MTEAPDEDVDPRVAEMVVSIRDRFGLRGLRGARWMIEQEIGLADDALA
Ga0136638_100306642	3300012094	Polar Desert Sand	MAETTGAGMPEDDLDPKVAELVTAIRDRFGLRGLRGARWMIENEIALAEDAISRLAPE*
Ga0136638_101374371	3300012094	Polar Desert Sand	MPDADLDPKVAELVMTIRDRFGLRGLRGARWMIDNEIALAEDAIAELARD*
Ga0136638_104484332	3300012094	Polar Desert Sand	MTEVPEVAGVPEDEVDPKVAELVVAIRDRFGLRGLRGAKWMIDKEIAIAEQALADLPKG*
Ga0136633_12302691	3300012527	Polar Desert Sand	EMPPAEMPDADLDPKVAELVMAIRDRFGLRGLRGARWMIEKEIALAEDAIAELARD*
Ga0136635_100040412	3300012530	Polar Desert Sand	MAEKTDAGMPDDDLDPKVAELVMAIRDRFGLRGLRGARWMIENEIALAEDAIAQLAPE*
Ga0157216_103080992	3300012668	Glacier Forefield Soil	MADAHTPDVEMPDADLDPKVAELVMAIRDRFGLRGLRGARWMIEKEIALAEDAIAELARD
Ga0136612_100560272	3300012680	Polar Desert Sand	MADVQPPEAEMPDADLDPKVAELVMAIRDRFGLRGLRGARWMIDNEIALAEDAIAELARD
Ga0136612_101239502	3300012680	Polar Desert Sand	MAEKTDAGLPDDDLDPKVAELVMAIRDRFGLRGLRGARWMIENEIALAEDAIAELSRE*
Ga0136612_103019731	3300012680	Polar Desert Sand	MDAEVPPAEMPPAEMPDADLDPKVAELVMAIRDRFGLRGLRGARWMIEKEIALAEDAIAELARD*
Ga0136612_105059411	3300012680	Polar Desert Sand	MADAEVPPAEMPPAEMPDADLDPKVAELVMAIRDRFGLRGLRGARWMIEKEIALAEDAIAELARD*
Ga0136613_100612602	3300012681	Polar Desert Sand	MTEAPDEDVDPRVAEMVVSIRDRFGLRGLRGARWMIEQEIRLAEDALADLPPE*
Ga0136611_101639232	3300012682	Polar Desert Sand	MADAQPPEAEIPDADLDPKVAELVMAIRDRFGLRGLRGARWMIDKEIALAEDAIAELARD
Ga0136611_102531612	3300012682	Polar Desert Sand	MADAQPPEAEMPDADLDPKVAELVMAIRDRFGLRGLRGARWMIDNEIALAEDAIAELARD
Ga0136611_109603221	3300012682	Polar Desert Sand	AEMPDADLDPKVAELVMAIRDRFGLRGMRGARWMIDNEIALAEDAIAELARD*
Ga0157298_103434921	3300012913	Soil	EVDPKVAELVMTIRDRFGLRGLRGARWMIDNEIALAEEAMAALAADR*
Ga0157297_101606312	3300012914	Soil	MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEAAMGELSAD*
Ga0164300_100751251	3300012951	Soil	MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARV
Ga0164299_111104102	3300012958	Soil	MTEATHGTPDEIDPRVAELVVAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE*
Ga0164308_106949622	3300012985	Soil	MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLDQEIALAEEAMTELSAD*
Ga0164305_120066522	3300012989	Soil	MTEATRGKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEEALA
Ga0136639_103710812	3300013097	Polar Desert Sand	MAETTGAGMPEDDLDPKVAELVTAIRDRFGLRGLRGARWMIENEIALAEDAI
Ga0157369_106871302	3300013105	Corn Rhizosphere	MTEATRDKPDEIDPRVVELVVAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE*
Ga0132258_121703652	3300015371	Arabidopsis Rhizosphere	MTERSTHGEPDDLDPRVVELVAAIRDRFGLRGMRGARWMIDREIALAEKAMADLPGE*
Ga0180121_100005862	3300017695	Polar Desert Sand	MAEKTDAGMPDDDLDPKVAELVMAIRDRFGLRGLRGARWMIENEIALAEDAIAQLAPE
Ga0180121_101185772	3300017695	Polar Desert Sand	MDAEVPPAEMPPAEMPPAEMPDADLDPKVAELVMAIRDRFGLRGLRGARWMIEKEIALAEDAIAELARD
Ga0136617_100131723	3300017789	Polar Desert Sand	MTEVPEVAGVPEDEVDPKVAELVVAIRDRFGLRGLRGAKWMIDKEIAIAEQALADLPKG
Ga0190266_100518162	3300017965	Soil	MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEEAMAELSAD
Ga0190266_105572271	3300017965	Soil	RTDDGEHQMTEATSGTPDELDPRVVELVVAIRDRFGLRGLRGARAMIDQEIAVAEKALAELPTE
Ga0184620_100442303	3300018051	Groundwater Sediment	MTEATSGTPDELDPRVVELVVAIRDRFGLRGLRGARAMIDQEIAVAEKALAELPTE
Ga0184617_12384202	3300018066	Groundwater Sediment	MTEATSGTPDEIDPRVAELVMAIRDRFGLRGLRGARAMIDQEIAVAEKALAELPTE
Ga0190272_101427112	3300018429	Soil	MTDVTGSAVPDEVDPRVAELVMAIRDRFGLRGLRGAHRMIEAEIAIAEKALEGL
Ga0190272_102741542	3300018429	Soil	MTDVNGSAVPDEVDPRVAELVLAIRDRFGLRGLRGAHRMIEDEIAIAEKAMEGLPTD
Ga0190272_110031021	3300018429	Soil	MTDVQGAAMPDEVDPAVAELVMAIRDRFGLRGLRGAAWMIQQEIAIAEQALEDLPTD
Ga0190275_119552631	3300018432	Soil	MPETSPSPMPQDDVDPRVAELVVAIRDRFGLRGLRGAQWMIEKEIVLAEEAINDLAPE
Ga0190275_132580181	3300018432	Soil	MTDANGSAEPDHVDPLVAELVNAIRDRFGLRGLRGAHRMIESEIAIAEKALEGLPTD
Ga0190269_118344171	3300018465	Soil	MTEGTGGMSEEVDPRVAELVVAIRDRFGLRGLRGARWMIEKEIALAEQAMEELAAE
Ga0190268_116618091	3300018466	Soil	MADGTNSGTDMPDEVDPKVAELVVTIRDRFGLRGLRGARWMIDKEITLAEEALADLAPDR
Ga0190270_111653582	3300018469	Soil	MTDANGSAEPDHVDPLVAELVMAIRDRFGVHGLRGAHRMIEAEIEIAEKALEGLPTD
Ga0190273_107198782	3300018920	Soil	EATSGTPDEIDPRVAELVVAIRDRFGLRGLRGARWMIEQEIALAEEALADLPTE
Ga0190273_120184092	3300018920	Soil	MTEGTSGMSEEVDPRVAELVMAIRDRFGLRGLRGARWMIEKEIALAEQAMEELAAE
Ga0190264_100486502	3300019377	Soil	MPETSPSPMPEDDVDPRVAELVVAIRDRFGLRGLRGAQWMIEKEIVLAEEAINDLAPE
Ga0206352_101216942	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MTEATRDKPDEIDPRVVELVVAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE
Ga0206353_111885132	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEEALAELP
Ga0222622_106016192	3300022756	Groundwater Sediment	MTEATSGTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIAVAERALAELPTE
Ga0247776_101378702	3300023275	Plant Litter	MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEAAMGELSAD
Ga0210087_11135512	3300025559	Natural And Restored Wetlands	MSEMPDEDVDPRVAEMVVAIRDRFGLRGLRGARWMIEKEIDLAEAAIADLSRE
Ga0207642_104176992	3300025899	Miscanthus Rhizosphere	MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE
Ga0207705_108134412	3300025909	Corn Rhizosphere	MTDRSTAGEPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEEAIAELSAD
Ga0207649_113697641	3300025920	Corn Rhizosphere	MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARAMIDQEIAVAERALAELPTE
Ga0207686_111855112	3300025934	Miscanthus Rhizosphere	MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEEALAE
Ga0207704_118858761	3300025938	Miscanthus Rhizosphere	MTEATRGKPEEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEDALAELPTE
Ga0207661_112494761	3300025944	Corn Rhizosphere	MTEATSGMPDEVDPRVAELVVAIRDRFGLRGLRGARWMIDHEITLAEEALA
Ga0207679_115310692	3300025945	Corn Rhizosphere	DDGEHQMTEATRGTPDEIDPRVAELVVAIRDRFGLRGLRGARAMIDQEIAVAERALAELPTE
Ga0207698_117488131	3300026142	Corn Rhizosphere	DKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE
Ga0214468_10200432	3300027647	Soil	VTEIPDDEVDPKVAELVVTIRDRFGLRGLRGARWMIDKEIAIADEALGDLAPD
Ga0247828_104458272	3300028587	Soil	MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEEAIAELSAD
Ga0307295_102406412	3300028708	Soil	RVEDPPTTTGRTMTDVSGSPVPDEVDPLVAELVMAIRDRFGVHGLRSAASMIEDEIAIAEKALEGLPTD
Ga0307285_101771512	3300028712	Soil	MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEEAMAELS
Ga0307311_102422162	3300028716	Soil	MTEATSGTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIALAEKALAELPTE
Ga0307317_102168562	3300028720	Soil	PSTDDGEHQMTEATSGTPDEIDPRVAELVMAIRDRFGLRGLRGARWMIEQEIALAEQALAELPTE
Ga0307316_102002851	3300028755	Soil	MTEATSGTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIALAE
Ga0307280_100960392	3300028768	Soil	MTEATSGTPDEIDPLVAELVVAIRDRFGLRGLRGARAMIDQEIAVAERALAELPTE
Ga0307282_103520302	3300028784	Soil	MTEATSGTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIA
Ga0307282_106248162	3300028784	Soil	MTEATGGTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIAVAERALAELPTE
Ga0307289_102260372	3300028875	Soil	MTEATGGTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIAVVGARC
Ga0307286_102490902	3300028876	Soil	GTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIALAEKALAELPTE
Ga0307278_102975992	3300028878	Soil	MTEATSGTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIALAEKALAQLPTE
Ga0307308_106576751	3300028884	Soil	MTEATSGTPDEIDPRVAELVMAIRDRFGLRGLRGARAMIDQEIAVAERALAE
Ga0247827_102755932	3300028889	Soil	MTEATRGTPDEIDPRVAELVVAIRDRFGLRGLRGAQWMIDKEIALAEEALAELPTE
Ga0247826_102382322	3300030336	Soil	MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGAHWMLEQEIALAEEAMAELSAD
Ga0247826_104129051	3300030336	Soil	MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEAAMG
Ga0307501_102494872	3300031152	Soil	MTEATSGTPDEVDPLVAELVVAIRDRFGLRGLRGAHAMIEQEIVRAEEAMAELPTE
Ga0307499_102328482	3300031184	Soil	TSGTPDEIDPRVAELVVAIRDRFGLRGLRGARAMIDQEIAVAERALAELPTE
Ga0307408_1004820491	3300031548	Rhizosphere	MTEDRNDLAEEVDPRVAELVVAIRDRFGLRGLRGAHWLIEQEIRIAEAAVADLARD
Ga0307413_107126182	3300031824	Rhizosphere	MTAASPPDGVPEDVDPHVAEMVIAIRDRFGVRGLRGARWMIDQEIRLAEDALSELDEDG
Ga0307407_114537991	3300031903	Rhizosphere	GARVGHAGHRPDGESGMTENQRADAPEDVDPRVAELVVAIRDRFGLRGMRGARWLLDQEIALAEEALAGLPSE
Ga0364935_0206778_59_232	3300034151	Sediment	MTDATGSAVPDEVDPLVAELVMAIRDRFGLRGLRGAHRMIESEIAIAEKALEGLPTD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098522

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences