3300001181: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2

Overview

Basic Information

• IMG/M Taxon OID: 3300001181
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0055370 | Ga0003009
• Sample Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25144067
• Sequencing Scaffolds: 39
• Novel Protein Genes: 43
• Associated Families: 36

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	17
Not Available	8
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → Kordia algicida	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Planococcaceae → Sporosarcina → Sporosarcina newyorkensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): coniferous forest biome → land → spruce forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000063	Metagenome / Metatranscriptome	2803	Y
F000207	Metagenome / Metatranscriptome	1597	Y
F000417	Metagenome / Metatranscriptome	1165	Y
F001147	Metagenome / Metatranscriptome	765	Y
F003446	Metagenome / Metatranscriptome	486	Y
F004348	Metagenome / Metatranscriptome	442	Y
F004457	Metagenome / Metatranscriptome	437	Y
F005577	Metagenome / Metatranscriptome	396	Y
F008276	Metagenome / Metatranscriptome	336	N
F008345	Metagenome	335	Y
F009926	Metagenome / Metatranscriptome	311	Y
F009983	Metagenome / Metatranscriptome	310	Y
F010420	Metagenome / Metatranscriptome	304	Y
F010586	Metagenome / Metatranscriptome	302	Y
F013016	Metagenome / Metatranscriptome	275	Y
F014248	Metagenome / Metatranscriptome	264	Y
F015539	Metagenome / Metatranscriptome	254	Y
F015625	Metagenome / Metatranscriptome	253	Y
F017314	Metagenome / Metatranscriptome	241	Y
F018972	Metagenome / Metatranscriptome	232	Y
F023491	Metagenome	210	Y
F026104	Metagenome / Metatranscriptome	199	Y
F028632	Metagenome / Metatranscriptome	191	Y
F032586	Metagenome / Metatranscriptome	179	Y
F033119	Metagenome / Metatranscriptome	178	Y
F033929	Metagenome / Metatranscriptome	176	Y
F049857	Metagenome / Metatranscriptome	146	Y
F053582	Metagenome / Metatranscriptome	141	Y
F059558	Metagenome / Metatranscriptome	133	Y
F061893	Metagenome / Metatranscriptome	131	Y
F062218	Metagenome / Metatranscriptome	131	Y
F069379	Metagenome / Metatranscriptome	124	N
F074174	Metagenome / Metatranscriptome	120	Y
F075150	Metagenome / Metatranscriptome	119	N
F091038	Metagenome	108	Y
F096001	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12663J13571_100016	All Organisms → cellular organisms → Bacteria	43445
JGI12663J13571_100026	All Organisms → cellular organisms → Bacteria	35610
JGI12663J13571_100042	Not Available	28292
JGI12663J13571_100054	All Organisms → cellular organisms → Bacteria	24068
JGI12663J13571_100064	All Organisms → cellular organisms → Bacteria	22247
JGI12663J13571_100090	All Organisms → cellular organisms → Bacteria	18713
JGI12663J13571_100099	All Organisms → cellular organisms → Bacteria	17793
JGI12663J13571_100234	All Organisms → cellular organisms → Bacteria	6385
JGI12663J13571_100304	All Organisms → cellular organisms → Bacteria	3238
JGI12663J13571_100493	All Organisms → cellular organisms → Bacteria	1664
JGI12663J13571_100525	All Organisms → cellular organisms → Bacteria	1599
JGI12663J13571_100851	All Organisms → cellular organisms → Bacteria	1170
JGI12663J13571_100873	All Organisms → cellular organisms → Bacteria	1152
JGI12663J13571_100916	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1122
JGI12663J13571_101054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1013
JGI12663J13571_101158	Not Available	948
JGI12663J13571_101243	All Organisms → cellular organisms → Bacteria	910
JGI12663J13571_101415	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	853
JGI12663J13571_101516	All Organisms → cellular organisms → Bacteria	818
JGI12663J13571_101874	All Organisms → cellular organisms → Bacteria	735
JGI12663J13571_102153	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692
JGI12663J13571_102332	Not Available	670
JGI12663J13571_102772	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	623
JGI12663J13571_102910	Not Available	609
JGI12663J13571_103008	Not Available	600
JGI12663J13571_103249	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → Kordia algicida	581
JGI12663J13571_103291	All Organisms → cellular organisms → Bacteria	579
JGI12663J13571_103403	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573
JGI12663J13571_103469	Not Available	569
JGI12663J13571_103716	Not Available	555
JGI12663J13571_103888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Planococcaceae → Sporosarcina → Sporosarcina newyorkensis	546
JGI12663J13571_103944	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543
JGI12663J13571_104101	All Organisms → cellular organisms → Bacteria	535
JGI12663J13571_104110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	535
JGI12663J13571_104138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	534
JGI12663J13571_104185	Not Available	532
JGI12663J13571_104372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	524
JGI12663J13571_104689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	512
JGI12663J13571_104936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12663J13571_100016	JGI12663J13571_10001635	F091038	MAPLTEFHASMADVTNEQHQNMAGLMQPDDFNADAVVRFLRDNGIDACVDESTGGFRYKIPDPACASHVLFACVCLRASISYSIEAAYWCIKAKR*
JGI12663J13571_100026	JGI12663J13571_10002624	F091038	MASPTEFHASIADVTNEQHQNMAGLVQDDDFNAEVIARFLRENGIDAHVDESTGGFRYTAANSARAEDVLFACVCLRASISYALEAAFWCIKAKR*
JGI12663J13571_100042	JGI12663J13571_10004216	F091038	MAPLTEFHASMADVTNEQHQNMDGLVQADDFNAEVVVRFLRDHGIDASVDESSGGFRYMAADETRASHLRFACVCLRASISYAIEAAYWCSKAKR*
JGI12663J13571_100054	JGI12663J13571_1000548	F091038	MAPLTEFYATIADVTNEQHQNIAGLVQPDDFNADVIVRFLQQNGIDASADESTGGFRYTAADATRASHVLFACVCLRASISYAIEAAYWCMKARR*
JGI12663J13571_100064	JGI12663J13571_10006418	F091038	MAPLTEFHATIVDVTNDEHQNIAGLVQPDDFNADVAVRFLRANGIDARVDESTGGFRYTAADPTRASHVRFACVCLRASISYAIEAAYWCIKAKR*
JGI12663J13571_100090	JGI12663J13571_10009023	F091038	MAPLTEFHATTADVTNEQHQNTAGLVQGDDFNAEVCVRFLRDNGIDANVDGSTGGFRYRAVDDEDASAVVFACVCLRASISYAIEAAYWCAKAKR*
JGI12663J13571_100099	JGI12663J13571_10009916	F091038	MAPLTEFHATMADVTNEEHQNMPGLVQPDDFNAKLVVRFLRDNGIDANVDESTGGFRYTAADPTRASHVRFACVCLRASISYAIEAAYWCLKVTR*
JGI12663J13571_100234	JGI12663J13571_1002341	F074174	VIELPARTRRVSGTRLLDLCRERDIASLVDPFMGLPTHLNVLKRHGIAVHGGDLLEWFVRAGEGIVVNDFTILRENEVAEVVEMLPGRIYPTDLFRAWEGVFFSEEQCRYLGVWHANVHALRSDGQTGLAVLGLWHVLCHWLLKARHPDEMVDVAPSELAWTYIRETERWVADNGKRNTVRRADFATTLANAKAEAVYLAPPGRSGAKRIDARVWMWEAWWQGDPYLNVERLYRDTVFGSSTNDDASYDRAIADVLEAASAARYVIVQSNTREAARFERLVRAHRANVEIVTPNDDELYVIGRT*
JGI12663J13571_100304	JGI12663J13571_1003042	F091038	MAPLTEFRASMADVTNEQHQNMAGLVQPDDFDANVVVRFLRNNGIDAYADESTGGFRYAVADAARASDVLFACVCLRASISYAIEAAYWCIKAKR*
JGI12663J13571_100493	JGI12663J13571_1004931	F059558	HPDKFYKGRSSIKGEVKKKHTSFGWNFSCFAAPLIERNLF*
JGI12663J13571_100525	JGI12663J13571_1005251	F018972	EDVLIAAPHTSLFPALGRLRKDGSGYSWVPVVFTDRWDEKQ*
JGI12663J13571_100851	JGI12663J13571_1008512	F023491	MDAEETDQQKSIVELQAIIAKGLKGINECRYKTDCEFACACPGTC*
JGI12663J13571_100873	JGI12663J13571_1008731	F049857	HSQNLIDLYAAQLRYDETYRREWCEKAGLGFELGELGYKSMAPIRPALVA*
JGI12663J13571_100916	JGI12663J13571_1009161	F008276	YKCRKRFELTGQSTVLINDTLGDPNADPENFGNR*
JGI12663J13571_101003	JGI12663J13571_1010032	F000063	MLAEGVWAEVKLGGEHIHLFAEHNAQGVQFSVYNVNTKSWIAPSEFVRDIQEGKDRAAALAEAYLHRTLNLELPLLEWKKARSI*
JGI12663J13571_101053	JGI12663J13571_1010531	F010586	SRFFHFVDLDGMTFTINAEPVTHVALDAEIESIL*
JGI12663J13571_101054	JGI12663J13571_1010542	F061893	MQPHITSPHTAPPDEARRRRRIRRSALLFALIATVFYFGFIVMTLVRGRP*
JGI12663J13571_101158	JGI12663J13571_1011581	F010420	MKKLAALTLSLFLISGIAFADSPKDADTAAAKNAPSEKAKEASKSDKSDSAIAAEIEELRQTLQSQQEQLQLLKEQL
JGI12663J13571_101243	JGI12663J13571_1012432	F004457	LILCAWTIVGLLFAARRIVLVKVQGIHVSWEIAGALELVYWYVWAAYTPLVIGLAKRFPLTGPRFVPHIAIHTITSFLMAPLGAITEYFLSRVLLQSVFRITDPGALRLLPTFTVSVLSMSFTGVLTYWLVVGLYQSIHFYQAAMERQTRAAQLEMQLS
JGI12663J13571_101415	JGI12663J13571_1014152	F003446	KAIVKNSQGSLVGAIERHIETAQQNLDTMATGTVERVQRNLETSRTKATERFVLRLREQVAPVMEEVRADFQKLVASQTVFKEESLAIYRRVTDQLESDANARLLQTHDQLEKSSTSVVNECNEKMLELSQAFEKIARDSAQNMIASATDEGNKNLEEKASEISSHFADQLEGHVRSYLEFIGKSIKEFPKNPPAA*
JGI12663J13571_101516	JGI12663J13571_1015162	F033119	MRSAVHQAGAAALTQLLQFEAPATDQRSLPCSCGGQARYLELRAKHLLSVVGEVELSRPYYLCDSC
JGI12663J13571_101634	JGI12663J13571_1016342	F013016	VRRNLFAKLGLTFLALLVSALLAVDYFAERALRRDYERTAYSQLSAVARIAQA
JGI12663J13571_101874	JGI12663J13571_1018741	F028632	WTATTETQSGNINPTRTIESHTQSGNRTLDKQSLQRRGSDGQFEPYQDVEKETVQLDATSVRTITRTFGRDANGAKTLVQVTEEERHALPGGDSNLVSTISNPDGNGKLQLIQRQIEETKKTSADVEETKTTMMLPSANGGLAPAMKVQERRQRGANDTVESQKTTLLPDGAGNWQVSEIRRATSRQEGKSKDRSTEERISRRDSEGKLGEVSRTLSNESENASGETRSTVETYSINVPGSVGD
JGI12663J13571_102007	JGI12663J13571_1020072	F000207	FPAMKMIFASIFTTILIVAMSLGAMFILVQTTIYVTAIQSTAQRAAAIAAELLLGVVLLLGTVWLATHLAVRIFGKKDALAGGPLV*
JGI12663J13571_102153	JGI12663J13571_1021531	F096001	MRRDTINEEHQQLQQALKFVTTRRAAVLLGISEEELRRISHESGFGRTEMAGGEEDTYFTYEELRQICVLSVNTIH*
JGI12663J13571_102332	JGI12663J13571_1023321	F015539	VELQLLDLMIPKECGAVPXDAATRAALIDLMARVLVTVFHEEGRRGNDRAL
JGI12663J13571_102772	JGI12663J13571_1027721	F032586	TVNLNLEKDEWKQFTQNPYRYQNQFDASPGTYKLTVVLSAGGDAFGKFEMPLQIDTYDGKHFSLGGVALTDSAQRLGDIPTSLDSALLEDRTPLVVQGLQILPSGTNRFKRDENVIVYSEIYEPLLTSDSPPKIGMGYRILDRASKKEVMFTGVVAVDTFIQKGNPVVPVGMKVNVKDLTPGAYVLVLQAVDGAGNKAPNRHVDFDV
JGI12663J13571_102910	JGI12663J13571_1029101	F015625	LLLCAVFTLEYGRAQEGSPLRGLRVKVHYKGSGTVDEKHKILVFLFDSPEFGHSNVMPFAVMSTSSKDGTVTFSDVAKSPAYVGAVYEPSGSYAERQGPPPPGSSLGMYSKTPGQPAPVKVEAGKTANVEFTFDDTVKMQ*
JGI12663J13571_103008	JGI12663J13571_1030081	F014248	DRRVARREPEPEAALELVMATGERLRIGAGVDAATLRTVLEVLRP*
JGI12663J13571_103249	JGI12663J13571_1032491	F026104	MVKSEIVVPIFVGKKLAAELDIESYFSDTFTKPEQEFVEACGAVMAKYLGKE*
JGI12663J13571_103291	JGI12663J13571_1032912	F017314	MLLPGKAGGTVAVRRTLASTICRIADPTQVPRPRQLRDASTVMRFQPAHQSMINRRFDDRAPCLAWMSPKQALAGKPRIHSPASGIGGHESGSNPTDGTLRMSRKAAKYLGSAG
JGI12663J13571_103403	JGI12663J13571_1034031	F001147	MAQTIWIHKLADAKKVEADGMGYICEHLFQALTQSGKLTKAKGWNPIPNASAKDGTTYQALFCDSCGKNYNNGNVRMAKEPVLV*
JGI12663J13571_103469	JGI12663J13571_1034692	F004348	ILSSLTIRFVETMDEVLQVALERLIVPIEHPAVAPVAEPFVAGAEKDTSLTN*
JGI12663J13571_103716	JGI12663J13571_1037162	F053582	FPASFFGMKKSELLRALQTEIQRHNLSTFVHEQHRIVITGCSFCRTHFGTVEQFKRHITEDVLPPLLDKLSVETK*
JGI12663J13571_103888	JGI12663J13571_1038881	F000417	IPLRAANKPHAGTDSQKPVVWTNDDLERLDALGLISIVGQIDQEKPKPPTLHEEYVQTQDPEWYAQEAATLRDELESRRAELDRYRQGIEDARSLEDTRPGIDLNDGDIGITPEAGLEVLQRRVNETQTELDALEDLARRNDMSPGTLRGQ*
JGI12663J13571_103944	JGI12663J13571_1039441	F009983	MRISRICAFVLLLVVGSVMAFADGINDPKIIIQGVNGGGSPQGCGPNGCQGVGVNFSFNIPKSGKGFLFFTNTSGKNWTSLALIETGVPANAISCAQTLFLSCTTKTLKNGSVEILLSGIRGGSNPRNGIKNGQSFDIGFACVGQSCWTNGGSVMSGH
JGI12663J13571_104101	JGI12663J13571_1041011	F009926	LGDVEGGDGRVHLVEXLAAAQKFGIDRADXVEHLAQFAEVGEELADFGVGRIRNVTDPRALAGSTDCGKISLGAMPSSVDTVAVGPPAAFVGLDQRAAQYLFDRRQAARKLVATLAKSCR
JGI12663J13571_104110	JGI12663J13571_1041101	F005577	PIDFRQMARSVPSYDPGRSVSRVNVAVAVAEDACGRIYEVAAACRALGLEHTSTLADIGVLTGSVEFHDLPKLRAIPEVVAVELEREFRSQEFRAGR*
JGI12663J13571_104138	JGI12663J13571_1041381	F033929	MPRGILSRRSDTGQISWGKLSHLPRTVAESTLRIFDGYGLRGTLPACPMLAPHIRFLSIDSRVCSMLPSDTASRR*
JGI12663J13571_104185	JGI12663J13571_1041852	F062218	VLDNGVELKDAHFILYLSNTEARLPVLLEAVMPFAVARVELVKAE*
JGI12663J13571_104372	JGI12663J13571_1043721	F075150	LEHHSANQFLKAATNLNVVQPKLFQASRQDDLRFSDCTVSVIQILDDADAAFRILGAGLRTVLS
JGI12663J13571_104689	JGI12663J13571_1046891	F008345	RTSQPEDQPLEEDPAPLRTAHGAPRPDPLLRSPMAQVLRTSIARGDFLTVRQGPGEFALDYGTSQRSFTPGASSVVSAQSGVADQTSGWKGREYVISVRAQLGPDVTERYGLSADGKHLVAKLHIATEELSAVDLTRVYDPTNETAPRQLPTND*
JGI12663J13571_104936	JGI12663J13571_1049362	F069379	ARAKADRDAAXKNRAAALAQENAKWKAQTQVIRLGVMASSNGFSRQGSKFLIAPRPREGASFVTYDIQESGAPTNVAASVTFYMREGWVRPNTDAFGCTLPAVPLDNVSEAWATSVADEVMFAVLRETSG*