NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2236876004

2236876004: Estuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-0p1-ETM-15m



Overview

Basic Information
IMG/M Taxon OID2236876004 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0047387 | Gp0054172 | Ga0011257
Sample NameEstuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-0p1-ETM-15m
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of South Carolina
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size200914161
Sequencing Scaffolds120
Novel Protein Genes129
Associated Families122

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available87
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED2021
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage8
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM015
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteria bacterium MS024-3C1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine And Estuarine Microbial Communities From Columbia River Coastal Margin
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomeestuarysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationColumbia River estuary, South channel near Astoria
CoordinatesLat. (o)46.249Long. (o)-123.986Alt. (m)N/ADepth (m)15
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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