Metagenome / Metatranscriptome Family F095132

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095132
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	61 residues
Representative Sequence	VHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGLAAFLALLTYQKTQAR
Number of Associated Samples	87
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.95 %
% of genes near scaffold ends (potentially truncated)	96.19 %
% of genes from short scaffolds (< 2000 bps)	70.48 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.476 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine (36.191 % of family members)
Environment Ontology (ENVO)	Unclassified (38.095 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (52.381 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.65% β-sheet: 0.00% Coil/Unstructured: 69.35%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00579	tRNA-synt_1b	61.90
PF14698	ASL_C2	11.43
PF02863	Arg_repressor_C	2.86
PF00696	AA_kinase	1.90
PF01960	ArgJ	0.95
PF02774	Semialdhyde_dhC	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0162	Tyrosyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	61.90
COG0180	Tryptophanyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	61.90
COG1438	Arginine repressor	Transcription [K]	2.86
COG0002	N-acetyl-gamma-glutamylphosphate reductase	Amino acid transport and metabolism [E]	0.95
COG0136	Aspartate-semialdehyde dehydrogenase	Amino acid transport and metabolism [E]	0.95
COG1364	Glutamate N-acetyltransferase (ornithine transacetylase)	Amino acid transport and metabolism [E]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.48 %
Unclassified	root	N/A	29.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.48 %
Unclassified	root	N/A	29.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.48 %
Unclassified	root	N/A	29.52 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	66.67 %
Unclassified	root	N/A	29.52 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.81 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	66.67 %
Unclassified	root	N/A	29.52 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	53.33 %
Unclassified	root	N/A	29.52 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	3.81 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.52 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	19.05 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.76 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.81 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.81 %
Actinobacteria bacterium IMCC19121	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium IMCC19121	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.52 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	19.05 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
actinobacterium acIB-AMD-6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-6	0.95 %
Actinobacteria bacterium IMCC19121	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium IMCC19121	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.52 %
Clavibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter	19.05 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
actinobacterium acIB-AMD-6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-6	0.95 %
Actinobacteria bacterium IMCC19121	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium IMCC19121	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.52 %
unclassified Clavibacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter	19.05 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
actinobacterium acIB-AMD-6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-6	0.95 %
Actinobacteria bacterium IMCC19121	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium IMCC19121	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.52 %
Clavibacter sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	19.05 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
actinobacterium acIB-AMD-6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-6	0.95 %
Actinobacteria bacterium IMCC19121	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium IMCC19121	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2035265000\|ErSWdraf_F5BXKTZ02FMA3L	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
2100351007\|LWFCAn_GLO1YSU01EAA37	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	506	Open in IMG/M
2236876004\|none_p0172719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	525	Open in IMG/M
2236876004\|none_p0206434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	534	Open in IMG/M
3300000736\|JGI12547J11936_1013410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2066	Open in IMG/M
3300002393\|B570J29605_1001186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2549	Open in IMG/M
3300002447\|JGI24768J34885_10011072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2980	Open in IMG/M
3300003277\|JGI25908J49247_10143869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	558	Open in IMG/M
3300003393\|JGI25909J50240_1015441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1813	Open in IMG/M
3300003393\|JGI25909J50240_1106902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	554	Open in IMG/M
3300003412\|JGI25912J50252_10017383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2325	Open in IMG/M
3300003429\|JGI25914J50564_10119816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	643	Open in IMG/M
3300003430\|JGI25921J50272_10027133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1461	Open in IMG/M
3300004790\|Ga0007758_10005185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2013	Open in IMG/M
3300004793\|Ga0007760_10038024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2218	Open in IMG/M
3300005517\|Ga0070374_10219470	Not Available	976	Open in IMG/M
3300005517\|Ga0070374_10266022	Not Available	874	Open in IMG/M
3300005580\|Ga0049083_10099218	Not Available	1009	Open in IMG/M
3300005582\|Ga0049080_10139374	Not Available	815	Open in IMG/M
3300005583\|Ga0049085_10239855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	595	Open in IMG/M
3300005584\|Ga0049082_10113809	Not Available	946	Open in IMG/M
3300006030\|Ga0075470_10137703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	717	Open in IMG/M
3300006805\|Ga0075464_10548577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	709	Open in IMG/M
3300006805\|Ga0075464_10974267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	531	Open in IMG/M
3300006875\|Ga0075473_10050809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1604	Open in IMG/M
3300006917\|Ga0075472_10324391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	760	Open in IMG/M
3300007545\|Ga0102873_1035538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1531	Open in IMG/M
3300007546\|Ga0102874_1100160	Not Available	916	Open in IMG/M
3300007546\|Ga0102874_1125130	Not Available	806	Open in IMG/M
3300007547\|Ga0102875_1113836	Not Available	860	Open in IMG/M
3300007549\|Ga0102879_1059610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1213	Open in IMG/M
3300007550\|Ga0102880_1110367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	722	Open in IMG/M
3300007593\|Ga0102918_1087236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	921	Open in IMG/M
3300007600\|Ga0102920_1061462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1178	Open in IMG/M
3300007620\|Ga0102871_1043496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1331	Open in IMG/M
3300007622\|Ga0102863_1007533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2951	Open in IMG/M
3300007622\|Ga0102863_1211371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	570	Open in IMG/M
3300007634\|Ga0102901_1100716	Not Available	826	Open in IMG/M
3300007634\|Ga0102901_1123624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	736	Open in IMG/M
3300007639\|Ga0102865_1067033	Not Available	1068	Open in IMG/M
3300007644\|Ga0102902_1167155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	651	Open in IMG/M
3300007649\|Ga0102912_1089973	Not Available	885	Open in IMG/M
3300007651\|Ga0102900_1014177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1658	Open in IMG/M
3300007651\|Ga0102900_1065046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	775	Open in IMG/M
3300007651\|Ga0102900_1078287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	707	Open in IMG/M
3300007653\|Ga0102868_1137562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	576	Open in IMG/M
3300008021\|Ga0102922_1135534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	778	Open in IMG/M
3300009049\|Ga0102911_1033671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1518	Open in IMG/M
3300009051\|Ga0102864_1049626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1134	Open in IMG/M
3300009058\|Ga0102854_1125061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	736	Open in IMG/M
3300009079\|Ga0102814_10346138	Not Available	809	Open in IMG/M
3300009152\|Ga0114980_10003951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-6	10044	Open in IMG/M
3300009152\|Ga0114980_10035768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3056	Open in IMG/M
3300009158\|Ga0114977_10038753	Not Available	2973	Open in IMG/M
3300009163\|Ga0114970_10062442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2374	Open in IMG/M
3300009163\|Ga0114970_10130839	Not Available	1526	Open in IMG/M
3300009183\|Ga0114974_10043974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3022	Open in IMG/M
3300009184\|Ga0114976_10026389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3514	Open in IMG/M
3300009184\|Ga0114976_10034544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3032	Open in IMG/M
3300009187\|Ga0114972_10237270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1107	Open in IMG/M
3300010160\|Ga0114967_10175690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1170	Open in IMG/M
3300010885\|Ga0133913_13317394	Not Available	1058	Open in IMG/M
3300010885\|Ga0133913_13329819	Not Available	1056	Open in IMG/M
3300013014\|Ga0164295_10079546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2437	Open in IMG/M
3300013372\|Ga0177922_10623755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	607	Open in IMG/M
3300018790\|Ga0187842_1118726	Not Available	795	Open in IMG/M
3300018868\|Ga0187844_10024417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3056	Open in IMG/M
3300020048\|Ga0207193_1877159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	508	Open in IMG/M
3300020155\|Ga0194050_1082298	Not Available	872	Open in IMG/M
3300021961\|Ga0222714_10224692	Not Available	1069	Open in IMG/M
3300021963\|Ga0222712_10083129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2283	Open in IMG/M
3300023179\|Ga0214923_10566071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	544	Open in IMG/M
3300024343\|Ga0244777_10006039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium IMCC19121	7815	Open in IMG/M
3300024348\|Ga0244776_10175002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1545	Open in IMG/M
3300024348\|Ga0244776_10200910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1417	Open in IMG/M
3300024485\|Ga0256318_1062898	Not Available	796	Open in IMG/M
3300024539\|Ga0255231_1028424	Not Available	881	Open in IMG/M
3300025732\|Ga0208784_1035785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1563	Open in IMG/M
3300027147\|Ga0255113_1008203	Not Available	2472	Open in IMG/M
3300027150\|Ga0255112_1009146	Not Available	2505	Open in IMG/M
3300027216\|Ga0208677_1007725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1498	Open in IMG/M
3300027217\|Ga0208928_1036403	Not Available	765	Open in IMG/M
3300027220\|Ga0208927_1000337	Not Available	12136	Open in IMG/M
3300027221\|Ga0208557_1010128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1765	Open in IMG/M
3300027232\|Ga0208803_1008952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2205	Open in IMG/M
3300027242\|Ga0208806_1006621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2532	Open in IMG/M
3300027247\|Ga0208679_1015494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1602	Open in IMG/M
3300027247\|Ga0208679_1058902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.	709	Open in IMG/M
3300027248\|Ga0208176_1006964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1636	Open in IMG/M
3300027300\|Ga0255140_1002263	Not Available	5161	Open in IMG/M
3300027508\|Ga0255072_1013300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1766	Open in IMG/M
3300027508\|Ga0255072_1042541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	939	Open in IMG/M
3300027531\|Ga0208682_1039340	Not Available	1243	Open in IMG/M
3300027679\|Ga0209769_1017051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2579	Open in IMG/M
3300027689\|Ga0209551_1000159	Not Available	22933	Open in IMG/M
3300027746\|Ga0209597_1150813	Not Available	994	Open in IMG/M
3300027759\|Ga0209296_1029743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3021	Open in IMG/M
3300027759\|Ga0209296_1070885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1746	Open in IMG/M
3300027764\|Ga0209134_10008979	Not Available	3007	Open in IMG/M
3300027797\|Ga0209107_10129370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1314	Open in IMG/M
3300027969\|Ga0209191_1023479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3030	Open in IMG/M
3300027969\|Ga0209191_1023998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2990	Open in IMG/M
3300027973\|Ga0209298_10024090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3012	Open in IMG/M
3300028261\|Ga0256316_1055030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	696	Open in IMG/M
3300028394\|Ga0304730_1130525	Not Available	1039	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	54.29%
Marine	Environmental → Aquatic → Marine	45.71%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	38.10%
Lake	Environmental → Aquatic → Freshwater → Lake	24.76%
Lentic	Environmental → Aquatic → Freshwater → Lentic	21.90%
River	Environmental → Aquatic → Freshwater → River	7.62%
Coastal	Environmental → Aquatic → Marine → Coastal	5.71%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.90%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	38.10%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	23.81%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	18.10%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	7.62%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.71%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.90%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.90%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.95%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.95%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.95%

Habitat	Taxonomy	Distribution
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	36.19%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	18.10%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	12.38%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	7.62%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	5.71%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	3.81%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.86%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.90%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine	1.90%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.90%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.95%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment	0.95%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.95%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.95%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.95%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment	0.95%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.95%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035265000	Freshwater microbial communities from Swedish Lakes - surface of Lake Erken	Environmental	Open in IMG/M
2100351007	Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, sample from flow sorted aerobic plus nitrate	Environmental	Open in IMG/M
2236876004	Estuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-0p1-ETM-15m	Environmental	Open in IMG/M
3300000736	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011	Environmental	Open in IMG/M
3300002393	Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion	Environmental	Open in IMG/M
3300002447	Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300003412	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD	Environmental	Open in IMG/M
3300003429	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN	Environmental	Open in IMG/M
3300003430	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD	Environmental	Open in IMG/M
3300004790	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004793	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005517	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)	Environmental	Open in IMG/M
3300005580	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300005583	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF	Environmental	Open in IMG/M
3300005584	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF	Environmental	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300006875	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA	Environmental	Open in IMG/M
3300006917	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA	Environmental	Open in IMG/M
3300007545	Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3	Environmental	Open in IMG/M
3300007546	Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02	Environmental	Open in IMG/M
3300007547	Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02	Environmental	Open in IMG/M
3300007549	Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02	Environmental	Open in IMG/M
3300007550	Estuarine microbial communities from the Columbia River estuary - metaG 1549A-3	Environmental	Open in IMG/M
3300007593	Estuarine microbial communities from the Columbia River estuary - metaG 1563A-3	Environmental	Open in IMG/M
3300007600	Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3	Environmental	Open in IMG/M
3300007620	Estuarine microbial communities from the Columbia River estuary - metaG 1546C-02	Environmental	Open in IMG/M
3300007622	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02	Environmental	Open in IMG/M
3300007634	Estuarine microbial communities from the Columbia River estuary - metaG 1555A-02	Environmental	Open in IMG/M
3300007639	Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02	Environmental	Open in IMG/M
3300007644	Estuarine microbial communities from the Columbia River estuary - metaG 1555B-02	Environmental	Open in IMG/M
3300007649	Estuarine microbial communities from the Columbia River estuary - metaG 1560A-3	Environmental	Open in IMG/M
3300007651	Estuarine microbial communities from the Columbia River estuary - metaG 1555C-3	Environmental	Open in IMG/M
3300007653	Estuarine microbial communities from the Columbia River estuary - metaG 1546C-3	Environmental	Open in IMG/M
3300008021	Estuarine microbial communities from the Columbia River estuary - metaG 1569A-3	Environmental	Open in IMG/M
3300009049	Estuarine microbial communities from the Columbia River estuary - metaG 1558A-02	Environmental	Open in IMG/M
3300009051	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02	Environmental	Open in IMG/M
3300009058	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02	Environmental	Open in IMG/M
3300009079	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741	Environmental	Open in IMG/M
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental	Open in IMG/M
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental	Open in IMG/M
3300009163	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental	Open in IMG/M
3300009187	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG	Environmental	Open in IMG/M
3300010160	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300013014	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300018790	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41	Environmental	Open in IMG/M
3300018868	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300020155	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L239-10m	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental	Open in IMG/M
3300023179	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510	Environmental	Open in IMG/M
3300024343	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction	Environmental	Open in IMG/M
3300024348	0.2um to 3um size fraction coassembly	Environmental	Open in IMG/M
3300024485	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepC_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024539	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepB_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025732	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027147	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepC_8h	Environmental	Open in IMG/M
3300027150	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepB_8h	Environmental	Open in IMG/M
3300027216	Estuarine microbial communities from the Columbia River estuary - metaG 1546A-3 (SPAdes)	Environmental	Open in IMG/M
3300027217	Estuarine microbial communities from the Columbia River estuary - metaG 1547A-3 (SPAdes)	Environmental	Open in IMG/M
3300027220	Estuarine microbial communities from the Columbia River estuary - metaG 1546C-02 (SPAdes)	Environmental	Open in IMG/M
3300027221	Estuarine microbial communities from the Columbia River estuary - metaG 1548A-3 (SPAdes)	Environmental	Open in IMG/M
3300027232	Estuarine microbial communities from the Columbia River estuary - metaG 1551A-02 (SPAdes)	Environmental	Open in IMG/M
3300027242	Estuarine microbial communities from the Columbia River estuary - metaG 1554B-02 (SPAdes)	Environmental	Open in IMG/M
3300027247	Estuarine microbial communities from the Columbia River estuary - metaG 1555A-02 (SPAdes)	Environmental	Open in IMG/M
3300027248	Estuarine microbial communities from the Columbia River estuary - metaG 1558A-3 (SPAdes)	Environmental	Open in IMG/M
3300027300	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepC_8d	Environmental	Open in IMG/M
3300027508	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8h	Environmental	Open in IMG/M
3300027531	Estuarine microbial communities from the Columbia River estuary - metaG 1568-02 (SPAdes)	Environmental	Open in IMG/M
3300027679	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)	Environmental	Open in IMG/M
3300027689	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)	Environmental	Open in IMG/M
3300027746	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027759	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027764	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)	Environmental	Open in IMG/M
3300027797	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)	Environmental	Open in IMG/M
3300027969	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027973	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300028261	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepB_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028394	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ErSWdraft_621770	2035265000	Freshwater	MRTESQDFSXFQGRPPNLVHTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGAFRPLLTHQKTLTR
LWFCAn_06500780	2100351007	Freshwater Sediment	HGQTAPLRALDWGVNAVRPQSSDSQQEGNYNPLGLGGQIGGLAAFPLLLNHQKTLAR
none_01727192	2236876004	Marine Estuarine	LEAQDXSXFSGQTPNLVHTREHGQTVALASSRLGVNAVRPQSSVSQQEGNYNPLGQEGQIGGLAAFPLLLNHQKTLAR
none_02064341	2236876004	Marine Estuarine	VHTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGDFRPLLTH
JGI12547J11936_10134103	3300000736	Freshwater And Sediment	RPPNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGFAPFLELLTRRKTQAR*
B570J29605_10011863	3300002393	Freshwater	GINAVRPQTSVSQQEGNYNPQAQGGQIGVFRAFRPPLMYQKTLAR*
JGI24768J34885_100110721	3300002447	Freshwater And Sediment	LVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGFAPFLELLTRRKTQAR*
JGI25908J49247_101438691	3300003277	Freshwater Lake	TAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGFAPFLELLTRRKTQAR*
JGI25909J50240_10154412	3300003393	Freshwater Lake	VHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQXGQIGGXAXFLXLXTXXKTQAR*
JGI25909J50240_11069022	3300003393	Freshwater Lake	MRTESXDFSXFSGQTAKPSAYTQAGQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFRAFRPPLMYQKTLAR*
JGI25912J50252_100173833	3300003412	Freshwater Lake	FQGRPPNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGFAPFLELLTRRKTQAR*
JGI25914J50564_101198161	3300003429	Freshwater Lake	NAVRPQSSVSQQEGNYNPLGQGGQIGGFATFLELLTRRKTQAR*
JGI25921J50272_100271331	3300003430	Freshwater Lake	CALSPRISPIFQGRPPNLVHTRRHGQTALNEALDLGINAVRPQTSVSQQEGNYNPLGQGGQIGVFSAFLLILTPQKTLAR*
Ga0007758_100051851	3300004790	Freshwater Lake	GVNAVRPQSSVSQQEENYNPLGQGGQIGGFAPFLELLTRRKTHAR*
Ga0007760_100380243	3300004793	Freshwater Lake	GVNAVRPQSSVSQQEVNYNPLGQEGQIGGLAAFLALLTYQKTQAR*
Ga0070374_102194701	3300005517	Freshwater Lake	PNLVHTRRHGQTALNEALDLGINAVRPQTSVSQQEGNYNPLGQGGQIGVFSAFLLILTPQKTLAR*
Ga0070374_102660222	3300005517	Freshwater Lake	REHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGLGGQIGGFAPFSPLLTYQKTQAR*
Ga0049083_100992181	3300005580	Freshwater Lentic	LISTLLSSQGTDAHLSPRISPIFQGRPPNLVHTREHGQTALLRALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGFAPFLELLTRRKTQAR*
Ga0049080_101393741	3300005582	Freshwater Lentic	VHTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPLGQGGQIGVFSAFLLILTPQKTLAR
Ga0049085_102398551	3300005583	Freshwater Lentic	EHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPQGQGGQIGVFEAFALFRTPEKTLAR*
Ga0049082_101138092	3300005584	Freshwater Lentic	FQGRPPNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEENYNPLGQGGQIGGFAPFLELLTRRKTQAR*
Ga0075470_101377031	3300006030	Aqueous	HGQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGAFRPLLTHQKTLAR*
Ga0075464_105485771	3300006805	Aqueous	PNLVHTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGDFRPLLTHQKTLTR*
Ga0075464_109742671	3300006805	Aqueous	RHGQTALNEALDLGINAVRPQSSVSQQEGNYNPRGQEGQIGVFGAFRPLLMYQKTLTR*
Ga0075473_100508093	3300006875	Aqueous	VHTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPQARGGQIGVFRAFRPLLMYQKTLAR*
Ga0075472_103243911	3300006917	Aqueous	LISTLLSSQGTDAHESQDFSCFSGQTAKPSAYTQAGQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGDFRPLLTHQKTLTR*
Ga0102873_10355381	3300007545	Estuarine	REHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPQAQGGQIGVFGDFRPLLTHQKTLTR*
Ga0102874_11001602	3300007546	Estuarine	FQGRPPNLVHTREHGQTAPLRALDWGVNAVRPQSSDSQQEGNYNPLGLGGQIGGLAAFPLLLNHQKTLAR*
Ga0102874_11251301	3300007546	Estuarine	PNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGLAAFLALLTYQKTQAR*
Ga0102875_11138361	3300007547	Estuarine	VNAVRPQSSVSQQEGNYNPLGQEGQIGGLAAFPLLLNHQKTLAR*
Ga0102879_10596102	3300007549	Estuarine	FQGRPPNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQEGQIGGLAAFLALLTYQKTQAR*
Ga0102880_11103672	3300007550	Estuarine	PNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPQGQGGQIGVFEAFALFRTPEKTLAR*
Ga0102918_10872361	3300007593	Estuarine	RALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGLAAFLALLTYQKTQAR*
Ga0102920_10614621	3300007600	Estuarine	EALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGVFRPLLMYQKTLAR*
Ga0102871_10434961	3300007620	Estuarine	NAVRPQSSVSQQEGNYNPLGQGGQIGGFAPFLELLTRRKTQAR*
Ga0102863_10075333	3300007622	Estuarine	GQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGFAPFLELLTRRKTQAR*
Ga0102863_12113712	3300007622	Estuarine	SPIFQGRPPNLVHTRRHGQTALNEALDLGINAVRPQSSVSQQEANYNPLGQGGQIGGLAAFPLLLTPQKTLAR*
Ga0102901_11007161	3300007634	Estuarine	WGVNAVRPQSSVSQQEGNYNPLGQEGQIGGLAALPLLLNHQKTQAR*
Ga0102901_11236241	3300007634	Estuarine	REHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPQGQGGQIGVFEAFALFRTPEKTLAR*
Ga0102865_10670331	3300007639	Estuarine	RHGQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGDFRPLLTHQKTLTR*
Ga0102902_11671552	3300007644	Estuarine	FQGRPPNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPQGQGGQIGVFEAFALFRTPEKTLAR*
Ga0102912_10899731	3300007649	Estuarine	VNAVRPQSSVSQQEGNYNPLGQGGQIGGLAAFPLLLTPQKTLAR*
Ga0102900_10141773	3300007651	Estuarine	VHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGLAAFLALLTYQKTQAR*
Ga0102900_10650462	3300007651	Estuarine	VHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQEGQIGGLAAFPLLLNHQKTLAR*
Ga0102900_10782871	3300007651	Estuarine	NLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPQGQGGQIGVFEAFALFRTPEKTLAR*
Ga0102868_11375622	3300007653	Estuarine	GVNAVRPQSSVSQQEGNYNPQGQGGQIGVFEAFALFRTPEKTLAR*
Ga0102922_11355341	3300008021	Estuarine	PNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGLAAFLALLTYQKTHAR*
Ga0102911_10336711	3300009049	Estuarine	ALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGDFRPLLTHQKTLTR*
Ga0102864_10496262	3300009051	Estuarine	DLGINAVRPQSSVSQQEENYNPQAQGGQIGVFGAFRPLLMYQKTLAR*
Ga0102854_11250612	3300009058	Estuarine	FQGRPPNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGLAAFLALLTYQKTQAR*
Ga0102814_103461382	3300009079	Estuarine	VHTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPLGQGGQIGVFSTFPRLLNHQKTL
Ga0114980_100039519	3300009152	Freshwater Lake	PNLVHTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGAFRPLLTHQKTLAR*
Ga0114980_100357681	3300009152	Freshwater Lake	PNLVHTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPLGQEGQIGVFSTFPLLLTPQKTLAR*
Ga0114977_100387531	3300009158	Freshwater Lake	RRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPRGQGGQIGVLSPFLALYTHQKTLAR*
Ga0114970_100624423	3300009163	Freshwater Lake	FQGRPPNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGLGGQIGVFEAFALFRTPEKTLAR*
Ga0114970_101308392	3300009163	Freshwater Lake	QTAPLRALDWGVNAVRPQSSDSQQEGNYNPLGLGGQIGGFATFLELLTRRKTQAR*
Ga0114974_100439741	3300009183	Freshwater Lake	PNLVHTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPLGQEGQIGVFRTFPLLLTPQKTLAR*
Ga0114976_100263891	3300009184	Freshwater Lake	RISPVFQGRPPNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEENYNPLGQGGQIGGFAPFLELLTRRKTQAR*
Ga0114976_100345444	3300009184	Freshwater Lake	RISPVFQGRPPNLVHTREHGQTAPLRALDWGVNAVRPQSSDSQQEGNYNPLGLGGQIGGLAALPLLLNHQKTLAR*
Ga0114972_102372702	3300009187	Freshwater Lake	LDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGFATFLELLTRRKTQAR*
Ga0114967_101756901	3300010160	Freshwater Lake	LDLGINAVRPQSSVSQQEGNYNPLGQEGQIGVFSTFPLLLTPQKTLAR*
Ga0133913_133173942	3300010885	Freshwater Lake	HGQTALNEALDLGINAVRPQSSVSQQEGNYNPRGQGGQIGVFRAFLALYTHQKTLAR*
Ga0133913_133298192	3300010885	Freshwater Lake	GQTALNEALDLGINAVRPQSSVSQQEGNYNPRGQGGQIGVLSPFLALYTHQKTLAR*
Ga0164295_100795461	3300013014	Freshwater	EHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLRQGGQIGGFAPFSPLLTHQKTLAR*
Ga0177922_106237552	3300013372	Freshwater	QTAPLRALDWGVNAVRPQSSVSQQEANYNPLGQEGQIGGLAAFLALLAYQKTQAR*
Ga0187842_11187261	3300018790	Freshwater	VHTREHGQTAPLRALDWGVNAVRPQSSVSQQEENYNPLGQGGQIGGFAPFLELLTRQKRK
Ga0187844_100244171	3300018868	Freshwater	PNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGFAPFLELLTRRKTQAR
Ga0207193_18771592	3300020048	Freshwater Lake Sediment	RRHGQTALTEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFRAFRPPLMYQKTLAR
Ga0194050_10822981	3300020155	Anoxic Zone Freshwater	ALDWGVNAVRPQSSVSQQEGNYNPLRQGGQIGGFAPFSPLLTHQKTLAR
Ga0222714_102246922	3300021961	Estuarine Water	NLVHTREHGQTAPLRALDWGVNAVRPQSSDSQQEGNYNPLGLGGQIGGLAAFPLLLNHQKTLAR
Ga0222712_100831291	3300021963	Estuarine Water	ALDLGINAVRPQSSVSQQEGNYNPLGQGGQIGGLATFPLLLRPQKTLAR
Ga0214923_105660711	3300023179	Freshwater	PRISPIFQGRPPNLVHTRRHGQTALNEALDLGINAVRPESSVSQQEGNYNPLGQEGQIGVFSTFPLLLTPQKTLAR
Ga0244777_100060391	3300024343	Estuarine	GQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGDFRPLLTHQKTLTR
Ga0244776_101750021	3300024348	Estuarine	PPNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPQGQGGQIGVFEAFALFRTPEKTLAR
Ga0244776_102009101	3300024348	Estuarine	RRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGVFRPLLMYQKTLAR
Ga0256318_10628982	3300024485	Freshwater	VNAVRPQSSVSQQEENYNPLGQGDQIGGFAPFLELLTRRKTQAR
Ga0255231_10284241	3300024539	Freshwater	INAVRPQSSVSQQEGNYNPLGQEGQIGILAAFSPLLTYQKTQAR
Ga0208784_10357853	3300025732	Aqueous	GQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFRAFRPPLMYQKTLAR
Ga0255113_10082033	3300027147	Freshwater	RYGCALSPRISPIFQGRPPNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQEGQIGGLAAFLALLTYQKTQAR
Ga0255112_10091461	3300027150	Freshwater	SPVFQGRPPNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQEGQIGGLAAFLALLTYQKTQAR
Ga0208677_10077252	3300027216	Estuarine	DLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGAFRPLHTHQKTLAR
Ga0208928_10364031	3300027217	Estuarine	VNAVRPQSSVSQQEGNYNPLGQEGQIGGLAAFPLLLNHQKTLAR
Ga0208927_10003371	3300027220	Estuarine	HTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGDFRPLLTHQKTLT
Ga0208557_10101281	3300027221	Estuarine	EALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGDFRPLLTHQKTLTR
Ga0208803_10089521	3300027232	Estuarine	QTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGDFRPLLTHQKTLTR
Ga0208806_10066211	3300027242	Estuarine	RHGQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGDFRPLLTHQKTLTR
Ga0208679_10154943	3300027247	Estuarine	PPNLVHTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGDFRPLLTHQKTLTR
Ga0208679_10589021	3300027247	Estuarine	REHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPQGQGGQIGVFEAFALFRTPEKTLAR
Ga0208176_10069643	3300027248	Estuarine	PPNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQEGQIGGLAAFLALLTYQKTQAR
Ga0255140_10022631	3300027300	Freshwater	RISPVFQGRPPNLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEENYNPLGQGGQIGVFKAFPLLLTHRKTQAR
Ga0255072_10133003	3300027508	Freshwater	LNEALDLGINAVRPQSSVSQQEGNYNPLAQGGQIGVFGAFRPLLTHQKTLTR
Ga0255072_10425411	3300027508	Freshwater	GQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGVFGAFRPLLMYQKTLAR
Ga0208682_10393402	3300027531	Estuarine	HGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGLAAFLALLTYQKTQAR
Ga0209769_10170513	3300027679	Freshwater Lake	NLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQEGQIGGLAAFLALLTYQKTQAR
Ga0209551_10001591	3300027689	Freshwater Lake	NLVHTREHGQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGQGGQIGGFAPFLELLTRRKTQAR
Ga0209597_11508132	3300027746	Freshwater Lake	GQTAPLRALDWGVNAVRPQSSVSQQEGNYNPLGLGGQIGVFEAFALFRTPEKTLAR
Ga0209296_10297434	3300027759	Freshwater Lake	NLVHTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPLGQEGQIGVFSTFPLLLTPQKTLAR
Ga0209296_10708853	3300027759	Freshwater Lake	NLVHTREHGQTAPLRALDWGVNAVRPQSSDSQQEGNYNPLGLGGQIGGLAALPLLLNHQKTLAR
Ga0209134_100089793	3300027764	Freshwater Lake	SPRISPIFQGRPPNLVHTRRHGQTALNEALDLGINAVRPQTSVSQQEGNYNPLGQGGQIGVFSAFLLILTPQKTLAR
Ga0209107_101293702	3300027797	Freshwater And Sediment	ALSPRISPIFQGRPPNLVHTRRHGQTALNEALDLGINAVRPQSSVSQQGGNYNPQAQGGQIGVFGALRHLMEYQKTLAR
Ga0209191_10234794	3300027969	Freshwater Lake	RPPNLVHTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPLGQEGQIGVFSTFPLLLTPQKTLAR
Ga0209191_10239984	3300027969	Freshwater Lake	APLRALDWGVNAVRPQSSDSQQEGNYNPLGLGGQIGGLAALPLLLNHQKTLAR
Ga0209298_100240901	3300027973	Freshwater Lake	HTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPLGQEGQIGVFSTFPLLLTPQKTLA
Ga0256316_10550302	3300028261	Freshwater	VHTRRHGQTALNEALDLGINAVRPQSSVSQQEGNYNPQAQGGQIGGLAAFPLLLTPQKTLAR
Ga0304730_11305252	3300028394	Freshwater Lake	LDWGVNAVRPQSSDSQQEGNYNPLGLGGQIGGFATFLELLTRRKTQAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095132

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences