Metagenome / Metatranscriptome Family F091427

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091427
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	73 residues
Representative Sequence	MLILGVYYAGISTTISLVNLLITRRTLSMPGLRNRRILLPFITITILLMLRALSVITPVLGSAMLMLLTDRH
Number of Associated Samples	80
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Eukaryota
% of genes with valid RBS motifs	49.53 %
% of genes near scaffold ends (potentially truncated)	29.91 %
% of genes from short scaffolds (< 2000 bps)	80.37 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Eukaryota (87.850 % of family members)
NCBI Taxonomy ID	2759
Taxonomy	All Organisms → cellular organisms → Eukaryota

Most Common Ecosystem
GOLD Ecosystem	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent (19.626 % of family members)
Environment Ontology (ENVO)	Unclassified (51.402 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (75.701 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.00% β-sheet: 0.00% Coil/Unstructured: 35.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00115	COX1	36.45
PF00238	Ribosomal_L14	2.80
PF00346	Complex1_49kDa	1.87
PF00137	ATP-synt_C	0.93
PF03947	Ribosomal_L2_C	0.93
PF00507	Oxidored_q4	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0093	Ribosomal protein L14	Translation, ribosomal structure and biogenesis [J]	2.80
COG0649	NADH:ubiquinone oxidoreductase 49 kD subunit (chain D)	Energy production and conversion [C]	1.87
COG3261	Ni,Fe-hydrogenase III large subunit	Energy production and conversion [C]	1.87
COG0090	Ribosomal protein L2	Translation, ribosomal structure and biogenesis [J]	0.93
COG0636	FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K	Energy production and conversion [C]	0.93
COG0838	NADH:ubiquinone oxidoreductase subunit 3 (chain A)	Energy production and conversion [C]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.72 %
Unclassified	root	N/A	10.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.72 %
Unclassified	root	N/A	10.28 %

Name	Rank	Taxonomy	Distribution
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	87.85 %
Unclassified	root	N/A	10.28 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	86.92 %
Unclassified	root	N/A	10.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Discoba	clade	All Organisms → cellular organisms → Eukaryota → Discoba	0.93 %

Name	Rank	Taxonomy	Distribution
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	85.98 %
Unclassified	root	N/A	10.28 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Euglenozoa	phylum	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa	0.93 %

Name	Rank	Taxonomy	Distribution
Ciliophora	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	85.98 %
Unclassified	root	N/A	10.28 %
Kinetoplastea	class	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	10.28 %
Intramacronucleata	subphylum	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	4.67 %
Metakinetoplastina	subclass	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	10.28 %
Oligohymenophorea	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1.87 %
Metakinetoplastina	subclass	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	10.28 %
Peritrichia	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peritrichia	0.93 %
Metakinetoplastina	subclass	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	10.28 %
Sessilida	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peritrichia → Sessilida	0.93 %
Metakinetoplastina	subclass	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	10.28 %
Vaginicolidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peritrichia → Sessilida → Vaginicolidae	0.93 %
Metakinetoplastina	subclass	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	10.28 %
Thuricola	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peritrichia → Sessilida → Vaginicolidae → Thuricola	0.93 %
Metakinetoplastina	subclass	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	10.28 %
Thuricola similis	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peritrichia → Sessilida → Vaginicolidae → Thuricola → Thuricola similis	0.93 %
Metakinetoplastina	subclass	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003163\|Ga0006759J45824_1117148	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	750	Open in IMG/M
3300007179\|Ga0099775_1185025	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1249	Open in IMG/M
3300007187\|Ga0099788_1150402	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	557	Open in IMG/M
3300007225\|Ga0099776_1000257	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	2006	Open in IMG/M
3300007228\|Ga0075175_1001311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3251	Open in IMG/M
3300007228\|Ga0075175_1003019	Not Available	2111	Open in IMG/M
3300007228\|Ga0075175_1380576	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1324	Open in IMG/M
3300007228\|Ga0075175_1434765	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1481	Open in IMG/M
3300007228\|Ga0075175_1437409	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	661	Open in IMG/M
3300007228\|Ga0075175_1450124	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	556	Open in IMG/M
3300007228\|Ga0075175_1473530	All Organisms → cellular organisms → Eukaryota → Sar	2488	Open in IMG/M
3300007230\|Ga0075179_1640516	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1107	Open in IMG/M
3300007232\|Ga0075183_11344772	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	643	Open in IMG/M
3300007233\|Ga0075178_1017436	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1954	Open in IMG/M
3300007237\|Ga0075177_1462771	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1095	Open in IMG/M
3300007239\|Ga0075171_1359430	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1600	Open in IMG/M
3300007241\|Ga0075170_1565221	Not Available	1575	Open in IMG/M
3300007244\|Ga0075167_10047029	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1703	Open in IMG/M
3300007244\|Ga0075167_10850248	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	536	Open in IMG/M
3300007244\|Ga0075167_10901227	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1602	Open in IMG/M
3300007244\|Ga0075167_10958619	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	743	Open in IMG/M
3300007244\|Ga0075167_11027056	Not Available	1970	Open in IMG/M
3300007253\|Ga0075182_10040150	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1129	Open in IMG/M
3300007253\|Ga0075182_10132775	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	2304	Open in IMG/M
3300007253\|Ga0075182_11115417	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	596	Open in IMG/M
3300007304\|Ga0102689_1678344	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	849	Open in IMG/M
3300007304\|Ga0102689_1743377	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	638	Open in IMG/M
3300007304\|Ga0102689_1750987	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	817	Open in IMG/M
3300007321\|Ga0102692_1273920	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	600	Open in IMG/M
3300007321\|Ga0102692_1533855	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1306	Open in IMG/M
3300007321\|Ga0102692_1602397	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1909	Open in IMG/M
3300007322\|Ga0099790_1302434	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	889	Open in IMG/M
3300007323\|Ga0099768_1330052	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	677	Open in IMG/M
3300007324\|Ga0099777_1227592	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	826	Open in IMG/M
3300007534\|Ga0102690_1731434	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	517	Open in IMG/M
3300007587\|Ga0099789_1116670	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1212	Open in IMG/M
3300007985\|Ga0100381_1006480	Not Available	9522	Open in IMG/M
3300008093\|Ga0100393_10478821	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	561	Open in IMG/M
3300008105\|Ga0114338_1000837	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	19949	Open in IMG/M
3300008105\|Ga0114338_1038530	Not Available	2153	Open in IMG/M
3300008105\|Ga0114338_1072814	Not Available	2471	Open in IMG/M
3300008121\|Ga0114356_1139529	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	4259	Open in IMG/M
3300008262\|Ga0114337_1334056	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	524	Open in IMG/M
3300008884\|Ga0103746_10006068	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1332	Open in IMG/M
3300008884\|Ga0103746_10007963	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1181	Open in IMG/M
3300008884\|Ga0103746_10020811	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	786	Open in IMG/M
3300009001\|Ga0102963_1055198	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1640	Open in IMG/M
3300009068\|Ga0114973_10120693	Not Available	1476	Open in IMG/M
3300009196\|Ga0103745_10062626	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	542	Open in IMG/M
3300009206\|Ga0103750_1003687	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1568	Open in IMG/M
3300009225\|Ga0103851_1039194	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	772	Open in IMG/M
3300009235\|Ga0103857_10133437	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	524	Open in IMG/M
3300009247\|Ga0103861_10008298	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1265	Open in IMG/M
3300009281\|Ga0103744_10160152	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	540	Open in IMG/M
3300009281\|Ga0103744_10172985	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	520	Open in IMG/M
3300009295\|Ga0103747_10083121	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	806	Open in IMG/M
3300009295\|Ga0103747_10093698	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	763	Open in IMG/M
3300009404\|Ga0103853_1010763	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	858	Open in IMG/M
3300009415\|Ga0115029_1004047	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	7732	Open in IMG/M
3300009500\|Ga0116229_10006890	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	18178	Open in IMG/M
3300009517\|Ga0102832_1000792	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peritrichia → Sessilida → Vaginicolidae → Thuricola → Thuricola similis	35296	Open in IMG/M
3300009693\|Ga0116141_10392149	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	715	Open in IMG/M
3300009724\|Ga0123380_114208	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1964	Open in IMG/M
3300009870\|Ga0131092_10008679	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	34850	Open in IMG/M
3300009870\|Ga0131092_10025244	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	10717	Open in IMG/M
3300011120\|Ga0150983_13711008	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	628	Open in IMG/M
3300011120\|Ga0150983_15887927	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	788	Open in IMG/M
3300011381\|Ga0102688_1578945	Not Available	1154	Open in IMG/M
3300012018\|Ga0119867_1030661	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1564	Open in IMG/M
3300012020\|Ga0119869_1140846	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	742	Open in IMG/M
3300012469\|Ga0150984_101367366	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1847	Open in IMG/M
3300012469\|Ga0150984_118429708	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	559	Open in IMG/M
3300012518\|Ga0129349_1127992	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	3076	Open in IMG/M
3300012687\|Ga0157543_1091133	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1523	Open in IMG/M
3300012706\|Ga0157627_1087526	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	615	Open in IMG/M
3300012707\|Ga0157623_1209057	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	709	Open in IMG/M
3300012709\|Ga0157608_1033229	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	697	Open in IMG/M
3300012709\|Ga0157608_1133866	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1102	Open in IMG/M
3300012711\|Ga0157607_1160195	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	576	Open in IMG/M
3300012714\|Ga0157601_1060288	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1037	Open in IMG/M
3300012724\|Ga0157611_1251983	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1081	Open in IMG/M
3300012726\|Ga0157597_1104745	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	705	Open in IMG/M
3300012727\|Ga0157531_1095507	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	530	Open in IMG/M
3300012748\|Ga0157553_1079765	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1142	Open in IMG/M
3300012755\|Ga0138281_1112584	Not Available	2022	Open in IMG/M
3300012758\|Ga0138285_1093575	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	774	Open in IMG/M
3300012760\|Ga0138273_1194674	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	533	Open in IMG/M
3300012770\|Ga0138291_1055306	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	650	Open in IMG/M
3300012781\|Ga0138286_1146385	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	553	Open in IMG/M
3300012785\|Ga0157528_152542	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1045	Open in IMG/M
3300012956\|Ga0154020_10002479	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	22480	Open in IMG/M
3300012963\|Ga0129340_1265119	All Organisms → cellular organisms → Bacteria → Proteobacteria	2424	Open in IMG/M
3300012968\|Ga0129337_1026023	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1450	Open in IMG/M
3300013014\|Ga0164295_11025482	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	640	Open in IMG/M
3300013295\|Ga0170791_13993791	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	528	Open in IMG/M
3300013295\|Ga0170791_15508610	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1063	Open in IMG/M
3300014023\|Ga0119891_111789	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	599	Open in IMG/M
3300014493\|Ga0182016_10137140	Not Available	1666	Open in IMG/M
3300020508\|Ga0208225_1016602	Not Available	966	Open in IMG/M
3300022652\|Ga0232059_1213360	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	626	Open in IMG/M
3300023095\|Ga0247736_10110751	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	944	Open in IMG/M
3300030738\|Ga0265462_10495844	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina	881	Open in IMG/M
3300033992\|Ga0334992_0002113	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	15249	Open in IMG/M
3300034021\|Ga0335004_0365982	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	828	Open in IMG/M
3300034050\|Ga0335023_0022214	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	3719	Open in IMG/M
3300034117\|Ga0335033_0552411	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	543	Open in IMG/M
3300034356\|Ga0335048_0255962	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	932	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.75%
Engineered	Engineered	34.58%
Host-Associated	Host-Associated	4.67%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	56.07%
Wastewater	Engineered → Wastewater	33.64%
Terrestrial	Environmental → Terrestrial	4.67%
Plants	Host-Associated → Plants	3.74%
Algae	Host-Associated → Algae	0.93%
Bioreactor	Engineered → Bioreactor	0.93%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	51.40%
Nutrient Removal	Engineered → Wastewater → Nutrient Removal	20.56%
Activated Sludge	Engineered → Wastewater → Activated Sludge	11.21%
Marine	Environmental → Aquatic → Marine	3.74%
Soil	Environmental → Terrestrial → Soil	3.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.80%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.93%
Red Algae	Host-Associated → Algae → Red Algae	0.93%
Peat Moss	Host-Associated → Plants → Peat Moss	0.93%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.93%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.93%
Anaerobic	Engineered → Bioreactor → Anaerobic	0.93%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	28.97%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified	19.63%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	11.21%
Sediment	Environmental → Aquatic → Freshwater → Sediment	8.41%
Lentic	Environmental → Aquatic → Freshwater → Lentic	8.41%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.74%
Coastal	Environmental → Aquatic → Marine → Coastal	2.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.80%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.87%
Loam	Environmental → Terrestrial → Soil → Loam	1.87%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.93%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.93%
Unclassified	Host-Associated → Algae → Red Algae → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.93%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.93%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified	0.93%
Biological Phosphorus Removal	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal	0.93%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	28.97%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified	19.63%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	11.21%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	8.41%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	7.48%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.87%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.93%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Algae → Red Algae → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.93%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.93%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified	0.93%
Bioreactor	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor	0.93%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Wastewater Effluent	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent	19.63%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	16.82%
Wastewater Sludge	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wastewater Sludge	8.41%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	7.48%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	6.54%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	5.61%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	4.67%
River Water	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water	3.74%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.80%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.87%
Aquifer	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.87%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	1.87%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	1.87%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.93%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.93%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.93%
Marine	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine	0.93%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.93%
Active Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge	0.93%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.93%
Wastewater	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater	0.93%
Wastewater Treatment	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment	0.93%
Anaerobic Bioreactor Biomass	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Bioreactor Biomass	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003163	Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300007179	Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_B4R_H (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300007187	Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_C6L_LD (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300007225	Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_B4L_H (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300007228	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 A brown RNA (Eukaryote Community Metatranscriptome)	Engineered	Open in IMG/M
3300007230	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 C RNA (Eukaryote Community Metatranscriptome)	Engineered	Open in IMG/M
3300007232	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 A2 RNA (Eukaryote Community Metatranscriptome)	Engineered	Open in IMG/M
3300007233	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 B RNA (Eukaryote Community Metatranscriptome)	Engineered	Open in IMG/M
3300007237	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 A RNA (Eukaryote Community Metatranscriptome)	Engineered	Open in IMG/M
3300007239	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 7/17/14 B2 RNA (Eukaryote Community Metatranscriptome)	Engineered	Open in IMG/M
3300007241	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 7/17/14 B RNA (Eukaryote Community Metatranscriptome)	Engineered	Open in IMG/M
3300007244	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 6/11/14 C2 RNA (Eukaryote Community Metatranscriptome)	Engineered	Open in IMG/M
3300007253	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 A1 RNA (Eukaryote Community Metatranscriptome)	Engineered	Open in IMG/M
3300007304	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300007321	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300007322	Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_D6L_HD (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300007323	Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_C2_LD (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300007324	Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_C4L_LD (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300007534	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel4S_1600h metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300007587	Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_D6R_HD (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300007985	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-05	Environmental	Open in IMG/M
3300008093	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-17	Environmental	Open in IMG/M
3300008105	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, sample E2014-0046-100-LTR	Environmental	Open in IMG/M
3300008121	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-100-LTR	Environmental	Open in IMG/M
3300008262	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA	Environmental	Open in IMG/M
3300008884	Microbial communities of wastewater sludge from Singapore - Sludge3_b2_February	Environmental	Open in IMG/M
3300009001	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG	Environmental	Open in IMG/M
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental	Open in IMG/M
3300009196	Microbial communities of wastewater sludge from Singapore - Sludge1_b2_February	Environmental	Open in IMG/M
3300009206	Microbial communities of wastewater sludge from Singapore - Sludge11_b2_February	Environmental	Open in IMG/M
3300009225	Microbial communities of water from Amazon river, Brazil - RCM4	Environmental	Open in IMG/M
3300009235	Microbial communities of water from Amazon river, Brazil - RCM10	Environmental	Open in IMG/M
3300009247	Microbial communities of water from Amazon river, Brazil - RCM14	Environmental	Open in IMG/M
3300009281	Microbial communities of wastewater sludge from Singapore - Sludge_b1_October	Environmental	Open in IMG/M
3300009295	Microbial communities of wastewater sludge from Singapore - Sludge5_b2_February	Environmental	Open in IMG/M
3300009404	Microbial communities of water from Amazon river, Brazil - RCM6	Environmental	Open in IMG/M
3300009415	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG	Host-Associated	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009517	Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/28/2013_ DNA (Illumina Assembly)	Engineered	Open in IMG/M
3300009693	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC097_MetaG	Engineered	Open in IMG/M
3300009724	Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_245_18m (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011381	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel7S_1600h metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012018	Activated sludge microbial communities from Shanghai, China - membrane bioreactor - Activated sludge (MBR)	Engineered	Open in IMG/M
3300012020	Activated sludge microbial communities from Shanghai, China - wastewater treatment plant - Activated sludge	Engineered	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012518	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012687	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES032 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012706	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES159 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012707	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES154 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012709	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES134 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012711	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES133 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012714	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES125 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012724	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES138 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012726	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES115 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012727	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES016 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012748	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES045 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012755	Freshwater microbial communities from Lake Montjoie, Canada - M_140807_E_mt (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012758	Freshwater microbial communities from Lake Simoncouche, Canada - S_130626_E_mt (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012760	Freshwater microbial communities from Lake Croche, Canada - C_130709_M_mt (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012770	Freshwater microbial communities from Lake Simoncouche, Canada - S_140625_E_mt (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012781	Freshwater microbial communities from Lake Simoncouche, Canada - S_130712_E_mt (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012785	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES011 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012956	Active sludge microbial communities from wastewater, Klosterneuburg, Austria - Klosneuvirus_20160825_MG	Engineered	Open in IMG/M
3300012963	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012968	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013014	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG	Environmental	Open in IMG/M
3300013295	northern Canada Lakes metatranscriptome co-assembly	Environmental	Open in IMG/M
3300014023	Wastewater microbial communities from municipal sewage treatment plant in Nanjing, China - JXZ_AS_meta	Engineered	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300020508	Freshwater microbial communities from Lake Mendota, WI - 15JUN2010 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300022652	Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_3 (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300023095	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L193-509B-2	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300033992	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035	Environmental	Open in IMG/M
3300034021	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057	Environmental	Open in IMG/M
3300034050	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095	Environmental	Open in IMG/M
3300034117	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2014-rr0124	Environmental	Open in IMG/M
3300034356	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0006759J45824_11171482	3300003163	Avena Fatua Rhizosphere	MLVVGVYFAGISTTISLTNLLVTRRTLTMPGMRNRRIIMPFISITVLLMLRALAVITPVLGSAMLMLILDRH*
Ga0099775_11850254	3300007179	Activated Sludge	MLILGVYYAGISTTISIFNLLSTRRNLSIPGLRNRRILLPFITITVLLMLRALFVITPVLGSAMLMLELDRH*
Ga0099788_11504021	3300007187	Activated Sludge	MLVVGVYYAGISTTISITNLLVTRRTLTMPGMRNRRIIIPFITITVLLMLRALAVITPVLGSAMLMLILDRH*
Ga0099776_10002572	3300007225	Activated Sludge	MLILGVYYAGISTTISIVNLLATRRNLSIPGLRNRRILLPFISISILLMLRALVIITPVLGSAMLMLALDRH*
Ga0075175_10013112	3300007228	Wastewater Effluent	MLILGVYYAGISTTISLVNLLSTRRTLSIPGLRNRRILLPFVSITVLLMLRALAVITPVLGSAMLMLVLDRH*
Ga0075175_10030192	3300007228	Wastewater Effluent	MIILGVYYAGISTTISIVNLLVTRRTLAMPGLRSRRILLPFITITSLLMLRALSIITPILGSAMLMLLTDRH*
Ga0075175_13805762	3300007228	Wastewater Effluent	MLILGVYFAGISTTISLVNLLATRRTLAIPGLRTRRILLPFISITILLMLRALAVITPVLGSAMLMLALDRH*
Ga0075175_14347653	3300007228	Wastewater Effluent	MLILGVYYAGISTTISLVNLLSTRRTLSISGLRNRRILLPFVSITVLLMLRALAVITPVLGSAMLMLVLDRH*
Ga0075175_14374091	3300007228	Wastewater Effluent	MLILGVYYAGISTTISLVNLLITRRTLSMPGLRNRRVLLPFISITILLMLRALSVITPVLGSAMLMLLTDRH*
Ga0075175_14501241	3300007228	Wastewater Effluent	MLILGVYYAGISTTISIVNLLITRRTLSMPGLRNRRILLPFMTITTLLMLRALSVITPVLGSAMLMLLTDRH*
Ga0075175_14735301	3300007228	Wastewater Effluent	MLILGVYYAGISTTISLVNLLSTRRTLSIPGLRNRRILLPFVSITILLMLRALAVITPVLGSAMLMLVLDRH*
Ga0075179_16405161	3300007230	Wastewater Effluent	MLILGVYYAGISTTISLVNLLITRRTLSMPGLRNRRILLPFMTITILLMLRALSVITPVLGSAMLMLLTDRH*
Ga0075183_113447722	3300007232	Wastewater Effluent	TTISLVNLLATRRCLSMPGLRNRRVLLSFITISILLMFRALAVITPVLGSAMLMLALDRH
Ga0075178_10174362	3300007233	Wastewater Effluent	MLILGVYYAGISTTISIVNLLSTRRNLSIPGLRNRRILLPFISISILLMLRALVVITPVLGSAMLMLALDRH*
Ga0075177_14627711	3300007237	Wastewater Effluent	YAGISTTISIVNLLITRRTLSMPGLRNRRILIPFVTITILLMLRALSVITPVLGSAMLMLLTDRH*
Ga0075171_13594302	3300007239	Wastewater Effluent	MLITGVYYAGISTTISLTNLLVTRRTLAMPGLRNRRILLPFTSITILLMLRALAIITPVLGSAMLMLLLDRH*
Ga0075170_15652212	3300007241	Wastewater Effluent	MLILGVYYAGISTTISIVNLLITRRTLSMPGLRNRRILIPFITITILLMLRALSVITPVLGSAMLMLLTDRH*
Ga0075167_100470292	3300007244	Wastewater Effluent	MLIIGVYYAGISTTISLTNLLVTRRTLTMPGLRNRRILLPFITITILLMFRALAVITPVLGSSMLMLALDRH*
Ga0075167_108502481	3300007244	Wastewater Effluent	MLILGVYYAGISTTISVFNLLATRRNLAIPGLRNRRILLPFVSITILLMLRALFVITPVLGSAMLMLILDRH*
Ga0075167_109012271	3300007244	Wastewater Effluent	MLVVGVYYAGISTTISLTNLLVTRRTLTMPGMRNRRILIPFISITVLLMLRALAVITPVLGSAMLMLALDRH*
Ga0075167_109586191	3300007244	Wastewater Effluent	MLILGVYYAGISTTISLVNLLITRRTLSMPGLRNRRILLPFVTITNLLMLRALSVITPVLGSAMLMLLTDRH*
Ga0075167_110270562	3300007244	Wastewater Effluent	MLVIGVYYAGISTTISLTNLLVTRRTLTMPGLRNRRILIPFISITILLMLRALAVITPVLGSAMLMLILDRH*
Ga0075182_100401501	3300007253	Wastewater Effluent	YAGISTTISIVNLLVTRRTLAMPGLRSRRILLPFITITSLLMLRALSIITPILGSAMLMLLTDRH*
Ga0075182_101327753	3300007253	Wastewater Effluent	LKFTGAGIQDMLILGVYFAGISTTISLVNLLATRRCLSMPGLRNRRVLLSFITISILLMFRALAVITPVLGSAMLMLALDRH*
Ga0075182_111154172	3300007253	Wastewater Effluent	GISTTISIVNLLSTRRNLSIPGLRNRRILLPFISISILLMLRALVVITPVLGSAMLMLALDRH*
Ga0102689_16783441	3300007304	Freshwater Lake	MLIIGVYFAGISTTISLTNLLVTRRTLTMPGMRNRRIIMPFISITVLLMLRALAVITPVLGSAMLMLALDRH*
Ga0102689_17433772	3300007304	Freshwater Lake	MLVVGVYYAGISTTISLTNLLVTRRTLTMPGMRNRRILIPFITITVLLMLRALAVITPVLGSAMLMLVLDRH*
Ga0102689_17509871	3300007304	Freshwater Lake	MLILGVYYAGISTTISLVNLLITRRTLSMPGLRNRRILLPFITITILLMLRALSVITPVLGSAMLMLLTDRH*
Ga0102692_12739202	3300007321	Freshwater Lake	MLVVGVYYAGISTTISLTNLLVTRRTLTMPGMRNRRILIPFITITVLLMLRALAVITPVLGSAMLMLV
Ga0102692_15338552	3300007321	Freshwater Lake	MLILGVYFVGISTTISFINLLVTRRVLSMSGLKNRRILIPFITTSILLMLRALSVITPILGSAMLMLLTDRH*
Ga0102692_16023973	3300007321	Freshwater Lake	MLILGVYYAGISTTISMVNLLITRRTLSMPGLRNRRVLLPFITITNLLMLRALSIITPVLGSAMLMLLTDRH*
Ga0099790_13024342	3300007322	Activated Sludge	MLILGVYYAGISTTISVFNLLATRRNLAIPGLRNRRILLPFVSISILLMLRALFVITPVLGSAMLMLILDRH*
Ga0099768_13300522	3300007323	Activated Sludge	DMLIIGVYYAGISTTISLTNLLVTRRTLTMPGMRNRRILLPFITITILLMFRALAVITPVLGSAMLMLALDRH*
Ga0099777_12275921	3300007324	Activated Sludge	MLITGVYYAGISTTISLTNLLVTRRTLSMPGLRGRRILLPFTSITILLMLRALAIITPVLGSAMLMLLLDRH*
Ga0102690_17314341	3300007534	Freshwater Lake	QDMLVVGVYYAGISTTISLTNLLVTRRTLTMPGLRNRRILVPFISITVLLMLRALAVITPVLGSAMLMLILDRH*
Ga0099789_11166704	3300007587	Activated Sludge	MLILGVYYAGISTTISIFNLLSTRRNLSIPGLRNRRILLPFITITVLLMLRALFVITPVLGSAMLMLEFDRH*
Ga0100381_10064802	3300007985	Aquifer	MLILGVYYAGISTTISLVNLLVTRRTLSMPGLRNRRVLLPFITITNLLMLRALSVITPVLGSAMLMLLTDRH*
Ga0100393_104788211	3300008093	Aquifer	FITPFSSNIEYTGYGIQDMLILGVYYAGISTTISLVNLLVTRRTLSMPGLRNRRGLLPFITITNLLMLRALSVITPVLGSAMLMLLTDRH*
Ga0114338_100083726	3300008105	Freshwater, Plankton	LQFTGVGVQDMLIIGVYYAGISTTISLTNLLVTRRTLTMPGMRNRRILLPFISITILLMFRALAVITPVLGSAMLMLALDRH*
Ga0114338_10385302	3300008105	Freshwater, Plankton	MLILGVYFAGISTTISVVNLLVTRRVLSMPGLRNRRVLLPFISITILLMLRALSVITPILGSAMLMLLADRH*
Ga0114338_10728142	3300008105	Freshwater, Plankton	MLILGVYFAGISTTISLVNLLVTRRALSMPGLRNRRILLPFVSITILLMLRALSVITPILGSAMLMLLADRH*
Ga0114356_11395296	3300008121	Freshwater, Plankton	MLILGVYYAGISTTISMVNLLITRRTLSMSGLRNRRVLLPFISITNLLMLRALSIITPVLGSAMLMLLTDRH*
Ga0114337_13340561	3300008262	Freshwater, Plankton	GFGIQDMLILGVYYAGISTTISIVNLLITRRTLSMPGLRNRRILIPFITITILLMLRALSVITPVLGSAMLMLLTDRH*
Ga0103746_100060682	3300008884	Wastewater Sludge	MLVVGVYYAGISTTISLTNLLVTRRTLTMPGMRNRRILIPFITITVLLMLRALAVITPVLGSAMLMLALDRH*
Ga0103746_100079631	3300008884	Wastewater Sludge	LRFTGPGIQDMLILGVYYAGISTTISVFNLLATRRNLAIPGLRNRRILLPFISISVLLMLRALFVITPVLGSAMLMLALDRH*
Ga0103746_100208111	3300008884	Wastewater Sludge	MLVLGVYYAGISTTISLVNLLATRRVLSIPGLRNRRILLPFISITILLMLRALAVITPVLGSAMLMLALDRH*
Ga0102963_10551982	3300009001	Pond Water	MLILGVYFAGISTTISLINLLSTRRILAMPGLRNRRILLPFTSIAILLMLRALAVITPVLGSAMLMLVLDRH*
Ga0114973_101206934	3300009068	Freshwater Lake	MLILGIYFAGISTTISVVNLLITRRVLSMPGLRGRRILIPFLSTTILLMLRALSVITPILGSAMLMLLSDRH*
Ga0103745_100626261	3300009196	Wastewater Sludge	VLCVYYAGISTTISLVNLLATRRVLSIPGLRNRRILLPFISITILLMLRALAVITPVLGSAMLMLALDRH*
Ga0103750_10036872	3300009206	Wastewater Sludge	MLILGVYYAGISTTISIFNLLSTRRNLSIPGLRNRRILLPFITITVLLMLRALFVITPVLGSTMLMLELDRH*
Ga0103851_10391941	3300009225	River Water	MLILGVYYAGISTTISMVNLLITRRTLSMSGLRNRRVLLPFITITNLLMLRALSIITPVLGSAMLMLLTDRH*
Ga0103857_101334371	3300009235	River Water	MLILGVYYAGISTTISLINLLITRRTLSMPGLRNRRILLPFMTITLLLMLRALSVITPVLGSAMLMLLTDRH
Ga0103861_100082981	3300009247	River Water	MLILGVYYAGISTTISLVNLLVTRRSLSMPGLRNRRVLLPFITITLLLMLRTLSVITPVLGSSMLMLMTDRH*
Ga0103744_101601521	3300009281	Wastewater Sludge	IQDMLILGVYYAGISTTISLVNLLATRRVLSIPGLRNRRILLPFITITILLMLRALAVITPVLGSAMLMLALDRH*
Ga0103744_101729851	3300009281	Wastewater Sludge	MLILGVYYAGISTTISLVNLLATRRTLSIPGLRNRRILLPFITITILLMLRALAVITPVLGSAMLMLVLDRH*
Ga0103747_100831212	3300009295	Wastewater Sludge	MLITGVYYAGISTTISLTNLLVTRRTLSMPGLRNRRILLPFTSITILLMLRALAIITPVLGSAMLMLLLDRH*
Ga0103747_100936982	3300009295	Wastewater Sludge	MLILGVYYAGISTTISLVNLLSTRRTLAIPGLRNRRILLPFVSITILLMLRALAVITPVLGSAMLMMVLDRH*
Ga0103853_10107631	3300009404	River Water	MLILGVYYAGISTTISMVNLLITRRALSMPGLRNRRVLLPFVSITILLMLRALSIITPVLGSAMLMLLTDRH*
Ga0115029_10040472	3300009415	Marine	MLILGVYFAGISTTISLVNLLATRRILSMSGLRNRRILLPFTSISILLMLRALAVITPVLGSAMLMMILDRH*
Ga0116229_100068906	3300009500	Host-Associated	MLITGIYFAGISTTISLTNLLVTRRTLSMPGLRNRRILLPFTTITILLMFRALAVITPVLGSAMLMLLLDRH*
Ga0102832_100079234	3300009517	Wastewater Treatment	MLVVGVYFAGISTTISITNLLVTRRTLTMPGMRNRRIIIPFISITVLLMLRALAVITPVLGSAMLMLILDRH*
Ga0116141_103921491	3300009693	Anaerobic Digestor Sludge	MLILGVYYAGISTTISLVNLLATRRTLAIPGLRNRRILLPFISITILLMLRALAVITPVLGSAMLMMILDRH*
Ga0123380_1142082	3300009724	Marine	MLILGVYYAGISTTISLTNLLVTRRTLAMSGLRNRRILLPFISIAILLMLRALAVITPVLGSAMLMLALDRH*
Ga0131092_1000867941	3300009870	Activated Sludge	MLILGVYYAGISTTISLVNLLATRRTLSIPGLRNRRILLPFITITVLLMLRALAVITPVLGSAMLMLVLDRH*
Ga0131092_100252446	3300009870	Activated Sludge	MLILGVYYAGISTTISLVNLLATRRVLSIPGLRNRRILLPFITITILLMLRALAVITPVLGSAMLMLALDRH*
Ga0150983_137110082	3300011120	Forest Soil	LILGVYYAGISSTISIVNLLVTRRQLSMSGLRNRRVLLPFMSITLLLMLRALSVITPILGSSMLMLLTDRH*
Ga0150983_158879272	3300011120	Forest Soil	MLILGIYYAGISTTISIVNLLITRRILSMSGLRGRRVLIPFISTTLLLMLRALSIITPVLGSAMLMLLTDRH*
Ga0102688_15789451	3300011381	Freshwater Lake	MLVLGVYFAGISTTISLTNLLVTRRTLTMPGLRNRRILVPFISITILLMLRALAVITPVLGSAMLMLILDRH*
Ga0119867_10306615	3300012018	Activated Sludge	ITPFSSKLKYTGPGIQDMLILGVYYAGISTTISIFNLLSTRRNLSIPGLRNRRILLPFITITVLLMLRALFVITPVLGSAMLMLELDRH*
Ga0119869_11408461	3300012020	Activated Sludge	GAGIQDMLVLGVYYAGISTTISLVNLLATRRVLSIPGLRNRRILLPFISITILLMLRALAVITPVLGSAMLMLALDRH*
Ga0150984_1013673662	3300012469	Avena Fatua Rhizosphere	MLVVGVYYAGISTTISLTNLLVTRRTLTMPGMRNRRIIMPFISITVLLMLRALAVITPVLGSAMLMLILDRH*
Ga0150984_1184297081	3300012469	Avena Fatua Rhizosphere	LVVGVYYAGISTTISLTNLLVTRRTLTMPGMRNRRIIMPFISITVLLMLRALAVITPVLGSAMLMLILDRH*
Ga0129349_11279923	3300012518	Aqueous	MLVLGVYFAGISTTISLVNLLATRRCLAMSGLRNRRVLLSFTSIAILLMFRALAVITPVLGSAMLMLILDRH*
Ga0157543_10911332	3300012687	Freshwater	MLILGIYYAGISTTISLVNLLITRRTLSMPGLRNRRVLLPFITITLLLMLRALSVITPVLGSAMLMLLTDRH*
Ga0157627_10875261	3300012706	Freshwater	MLILGVYYAGISTTISLVNLLITRRTLSMPGLRNRRVLLPFITITLLLMLRALSVITPVLGSAMLMLLTDRH*
Ga0157623_12090572	3300012707	Freshwater	FGIQDMLILGVYYAGISTTISIVNLLITRRTLSMPGLRNRRILIPFITITILLMLRALSVITPVLGSAMLMLLTDRH*
Ga0157608_10332291	3300012709	Freshwater	MLIIGVYYAGISTTISLTNLLVTRRTLTMPGMRNRRILLPFISITILLMFRALAVITPVLGSAMLMLALDRH*
Ga0157608_11338661	3300012709	Freshwater	MLILGVYYAGISTTISLVNLLITRRTLSMPGLRNRRVLLPFITITILLMLRALSVITPVLGSAMLMLLTDRH*
Ga0157607_11601951	3300012711	Freshwater	MLIIGVYFAGISTTISLTNLLVTRRTLTMPGMRNRRILMPFISITVLLMLRALAVITPVLGSAMLMLALDRH*
Ga0157601_10602881	3300012714	Freshwater	LILGVYYAGISTTISIVNLLITRRTLSMPGLRNRRILLPFITITILLMLRALSVITPVLGSAMLMLLTDRH*
Ga0157611_12519833	3300012724	Freshwater	TISIVNLLITRRTLSMPGLRNRRILIPFITITILLMLRALSVITPVLGSAMLMLLTDRH*
Ga0157597_11047452	3300012726	Freshwater	GVYFAGISTTISITNLLVTRRTLTMPGMRNRRIIIPFISITVLLMLRALAVITPVLGSAMLMLILDRH*
Ga0157531_10955071	3300012727	Freshwater	GIYYAGISTTISMINLLITRRTLSMSGLRNRRVLLPFISITNLLMLRALSIITPVLGSAMLMLLTDRH*
Ga0157553_10797652	3300012748	Freshwater	NTEYTGFGIQDMLILGIYYAGISTTISLVNLLITRRTLSMPGLRNRRVLLPFITITLLLMLRALSVITPVLGSAMLMLLTDRH*
Ga0138281_11125842	3300012755	Freshwater Lake	MLILGVYYAGISTTISIVNLLITRRVLSMAGLRGRRILVPFISTTILLMLRALSVITPVLGSAMLMLLADRH*
Ga0138285_10935752	3300012758	Freshwater Lake	MLILGVYYAGISTTISMINLLITRRTLSMSGLRNRRVLLPFISITNLLMLRALSIITPVLGSAMLMLLTDRH*
Ga0138273_11946741	3300012760	Freshwater Lake	LGVYYAGISTTISMINLLITRRTLSMSGLRNRRVLLPFISITNLLMLRALSIITPVLGSAMLMLLTDRH*
Ga0138291_10553061	3300012770	Freshwater Lake	LILGVYYAGISTTISMINLLITRRTLSMPGLRNRRVLLPFITITNLLMLRALSIITPVLGSAMLMLLTDRH*
Ga0138286_11463851	3300012781	Freshwater Lake	MLIIGIYFAGVSTTISLTNLLVTRRTLTMPGMKNRRVLMPFISITVLLMLRALAVITPVLGSAMLMLILDRH*
Ga0157528_1525421	3300012785	Freshwater	GFGIQDMLILGIYYAGISTTISLVNLLITRRTLSMPGLRNRRVLLPFITITLLLMLRALSVITPVLGSAMLMLLTDRH*
Ga0154020_1000247929	3300012956	Active Sludge	MLVVGVYYAGISTTISLTNLLVTRRTLTMPGLRNRRILIPFITITVLLMLRALAVITPVLGSAMLMLVLDRH*
Ga0129340_12651192	3300012963	Aqueous	MLILGVYIVGISSTISIVNLLATRRVLSMPGLKNRRILLPFVSISILLMLRALAVITPVLGSAMLMLILDRH*
Ga0129337_10260232	3300012968	Aqueous	LQFTGAGIQDMLVVGVYYAGISTTISLTNLLVTRRTLTMPGMRNRRILIPFITITVLLMLRALAVITPVLGSAMLMLALDRH*
Ga0164295_110254822	3300013014	Freshwater	MLILGIYYAGISTTISLVNLLITRRTLSMPGLRNRRVLLPFITITLLLMLRALSVITPVLGSAMLMLLTDR
Ga0170791_139937911	3300013295	Freshwater	PFSSKLQFTGAGIQDMLVVGVYFAGVSTTISLTNLLVTRRTLTMPGMRNRRIIIPFISITILLMLRALAVITPVLGSAMLMLILDRH*
Ga0170791_155086102	3300013295	Freshwater	MLILGVYYAGISTTISMINLLITRRTLSMPGLRNRRVLLPFITITNLLMLRALSIITPVLGSAMLMLLTDRH*
Ga0119891_1117891	3300014023	Wastewater	FSSKLKYTGAGIQDMLILGVYYAGISTTISIVNLLSTRRNLSIPGLRNRRILLPFISISILLMLRALVVITPVLGSAMLMLALDRH*
Ga0182016_101371402	3300014493	Bog	MLILGVYYAGISTTISIVNLLITRRVLSMVGLRGRRILVPFISTTILLMLRALSVITPVLGSAMLMLLADRH*
Ga0208225_10166022	3300020508	Freshwater	MLILGVYYAGISTTISIVNLLATKRTLTMPGLRNRRILLPFITITVLLMLRALVVITPV
Ga0232059_12133602	3300022652	Anaerobic Bioreactor Biomass	MLILGVYYAGISTTISLINLLATRRTLSIPGLRNRRILMPFISITILLMLRALAVITPVLGSAMLMLALDR
Ga0247736_101107511	3300023095	Plant Litter	PFSSNIKYTGIGAQDILILAVVAAGISTTISFTNLLITRRTLSMPGLRHRRILLPFVTIGILLALRMLALITPVLAAAMLMMFLDRH
Ga0265462_104958442	3300030738	Soil	GISTTISIVNLLITRRILSMSGLRGRRVLIPFISTTLLLMLRALSIITPVLGSAMLMLLTDRH
Ga0334992_0002113_1474_1692	3300033992	Freshwater	MLVIGVYFAGISTTISLTNLLVTRRTLTMPGMKNRRILMPFISITVLLMLRALAVITPVLGSAMLMLILDRH
Ga0335004_0365982_571_789	3300034021	Freshwater	MLILGVYYAGISTTISMINLLITRRTLSMSGLRNRRVLLPFISITNLLMLRALSIITPVLGSAMLMLLTDRH
Ga0335023_0022214_264_482	3300034050	Freshwater	MLVVGVYYAGISTTISLTNLLVTRRTLTMPGMRNRRIIIPFISITILLMLRALAVITPVLGSAMLMLILDRH
Ga0335033_0552411_79_297	3300034117	Freshwater	MLILGVYYAGISTTISLVNLLITRRTLSMPGLRNRRVLLPFITITLLLMLRALSVITPVLGSAMLMLLTDRH
Ga0335048_0255962_23_241	3300034356	Freshwater	MLIIGVYYAGISTTISLTNLLVTRRTLTMPGMRNRRIIMPFISITVLLMLRALAVITPVLGSAMLMLALDRH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091427

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences