3300009724: Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_245_18m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300009724
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110190 | Gp0141786 | Ga0123380
• Sample Name: Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_245_18m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 16488885
• Sequencing Scaffolds: 41
• Novel Protein Genes: 44
• Associated Families: 36

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	25
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1
All Organisms → Viruses → environmental samples → uncultured marine virus	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Goniodomataceae → Pyrodinium → Pyrodinium bahamense	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Louisana Shelf, Hypoxic Zone, Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.8679
  • Long. (^o): -90.4764
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000048	Metagenome / Metatranscriptome	3365	Y
F000183	Metagenome / Metatranscriptome	1709	Y
F000491	Metatranscriptome	1079	Y
F000981	Metatranscriptome	814	Y
F001108	Metagenome / Metatranscriptome	775	Y
F001583	Metagenome / Metatranscriptome	668	Y
F001707	Metatranscriptome	648	N
F001926	Metagenome / Metatranscriptome	616	Y
F002029	Metatranscriptome	602	Y
F002556	Metagenome / Metatranscriptome	548	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0123380_100667	Not Available	895
Ga0123380_102427	Not Available	859
Ga0123380_103332	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	512
Ga0123380_104346	Not Available	638
Ga0123380_106215	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	812
Ga0123380_107290	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	605
Ga0123380_107489	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	533
Ga0123380_108032	Not Available	608
Ga0123380_108383	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	736
Ga0123380_108910	Not Available	599

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0123380_100667	Ga0123380_1006671	F000491	VQPASSRAFAAASPWGTDHWRHSKAAFKDWTKAAVAPGVSREKREFFGFCALAFGDVDVDKDGFINLEEFDRLLESVAAVPRRYGLAPVSTVSTLERQMAHKKLFDQLDTKAGPARGVLGLDQFVEWAFDHVISKIGKVPAKDVGLYQVQDYTEEEYIGFVERAVNNPGSYEHASFYNFILNCFVEADEQCEGRITYDQFDKLLTRAAVVPRHFGLAPPESSTEARKKMFDQLELVRGDKKTGYVTARTFWEWTVVHVKGMIELQKAGKGWRENH*
Ga0123380_101099	Ga0123380_1010991	F097448	SFEEKQQLRADEIAAIAKAIEILSDGRVDAGHQHIGLAQTASSFVQTDRADKFLGQSEGIHRRLREFLAGEAQRLHSKNLGLLSEKVGADPFAKVKKLIDDMITRLLEEANADAEKEGWCDTEMGKSKVTRNKLSEEIDGLDAAIEDGKGTIMALTQELADLADEIEDLDAQMGE
Ga0123380_102427	Ga0123380_1024271	F000491	LVKVVLSHFCWCIMLAPVRSAARPAARTFSASPWGTDHWRHDKQAFKAWAKEASEPGSSKAKRELYGFLALSFGDVDTDKDGLINAEQFDQLLAEVAALPRRYGLAPLDVGDAVSRAVNHKILFDSLDTKNGPARGVLGLDQFIEWAYDHVVTHVPKVPAKDVGLYHVEDYSEEEYIGFVEKAVNNPGSYEHASFYNFILNCFVEADEQCQGRITYDQFDKLLSRAATVPRHFGLAPPESSTEARKKMFDELELKRGGKGTGYVTARTFWEWTVVHVKGMIELQK
Ga0123380_103332	Ga0123380_1033321	F017832	TNADDDAASFKNTAVPTTYLDMFGWNAAVMGFGSSLWMNEVLASFDIIVTNVSNSYRLQEECDVLSLRLAKYKGVINLPEYKAVMLAALRSLVAKEWSTAHEVAWTWLWENVERMLKNLMGKPAVQEKLAPVGQDYFKQSTTRLHWIADKIVSWTLEMYQEPKRMVEDIS
Ga0123380_104346	Ga0123380_1043461	F000981	KVAAVPRRYGLAPVSTMTTLERQMAHKKLFDQLDTKAGPARGVLGLDQFVEWAFDHVISKIGKVPAKDVGLYQVQDYSEEEYIGFVERAVNNPGSYEHASFYNFILNCFVEADEQCEGRITYDQFDKLLTRAAVVPRHFGLAPPESSTEARKKMFDQLELVRGDKKTGYVTARTFWEWTVVHVKGMIELQKAGKGWRENH*
Ga0123380_106215	Ga0123380_1062152	F001926	VRHEDTPETNNPKIRFAVLEGDKLMKEVLNGGYNVHPVPPPNSEIEERIRRKYERKRSKIERLLILGYTTSGDP*
Ga0123380_107290	Ga0123380_1072901	F001108	LKGVKLALKILNEYYAKAGKAHGSSDGAGGGIVGMLEVIESDFTKGITEMVAAEQMAADTYEKETKENAVEKTTKEQDVKYKTKEFTGLDKTIGELTSERSGVEDELTAVNDYLASLDKKCTYKVESYAERKARRQAEIDGLKEALEVLESETALVQTSARHTLRGVRKH*
Ga0123380_107348	Ga0123380_1073481	F000048	LKGRYKKVKDVSDEWMKKADTLVKEWKLLDNTVNELNSWVAKDRGAETEQQFSLEKMESTLGELKNIFKEKERLVDNL*
Ga0123380_107489	Ga0123380_1074891	F001926	TNNPKIRFAVLEGDKLMKEVLNGGYNVHPVPPPNSEIKESITRKNERKRSKIEKLFTLGYTTSGDP*
Ga0123380_108032	Ga0123380_1080321	F045528	MKSLSLIVLFALALPAMGTDPLTLTLGSTAYTLTGAQVSIAAASVAALAITKELLILADLGAFRKGKRDVNAVLNTPLDFSAYFDRIAKSDSDNCAKPLVCHSMAKSEQTLNAEEKAITKLFDNLEVINPYSGYAEYQLAAYAGTFKHPELCVARYNTCRTPIQKL
Ga0123380_108383	Ga0123380_1083831	F004023	LFRKLYLNVFEYENESA*KSGVFTFLIFQVVVFFGLVLCATHLSEITLTIAANIFHTFFMFKGKFY**IFTDKQLNTDTFIRLAYGHYLIAFYMAYLGLIHGVDMHYD*KNETTFDGLDAEMV**DEALSSELGHMTDVIIIIAFVC*YMYADPEALSYEIFM*GDIGIVTDVRFYGVAPH*YFRPFMA*LIACPYHRTGIFGLLFFFFALFFQPVLHGTSEQNNYNKRVLLFTKQKLNRYNMFS
Ga0123380_108910	Ga0123380_1089101	F028521	PGDDGSGNWQTVATASSSWRDIGYSEDGWTLEMDRTFEDILVAEEVDPIKTIKTAQEARLMGELSQASLANLSVAMGQVDSYVSEDDSDFAAGYDVVKAPITDSFSEMAALLIAEGPAGADRHVQMPRVVSVGAFSMQHAKAPQKVVIATEFKLLVPDSTFNVGATGGKYHLFKIVDNTNDGQTFDVN*
Ga0123380_108991	Ga0123380_1089911	F011190	KIWRIQMFRGFIEGLKKSFSGKDYLRKLNTCDTCGKPSYMYRCLKCEVDGAYRGWNKKNVQ*
Ga0123380_109099	Ga0123380_1090993	F067819	MESLFIAWGESQAWWGTFASIVVVANAITLAVKDQYAEKLPIIGKIWPIMNWLALNVHHNKNKDK*
Ga0123380_109561	Ga0123380_1095611	F007004	MKNIMLGFCLIVLIGCGTSNAYKRPDVRIVGEAQMKKLENGNYEVTPRWIKDRFDTENSMLKQLEDCREGGR*
Ga0123380_110211	Ga0123380_1102111	F068117	MTETINPANAPALEKTKSLGIKNIEGKEIFIVGCNHNRGAPTKYTRADQVGEDGKTDYYTVKIETPIDLEYKEEGIIPIDNFFVTQAIYQQLERIPNAIEGINNGARLGPAKAVKRESQKTGNPYWCLAFESDADY
Ga0123380_112176	Ga0123380_1121761	F000491	HWRHSKAAFKDWTKAAVAPGVSREKREFFGFCALAFGDVDTNKDGFINLEEFDRLLETVAAVPRRYGLAPVSTVSPLERQMAHKKLFDQLDTKAGPARGVLGLDQFVEWAFDHVISKIGKVPAKDVGLYQVQDYTEEEYIGFVERAVNNPGSYEHASFYNFILNCFVEADEQCEGRITYDQFDKLLTRAAVVPRHFGLAPPESSAEARKKMFDQLELVRGDKKTGYVTARTFWEWTVVHVKGMIELQKAGKGWRENH*
Ga0123380_113757	Ga0123380_1137571	F003081	AEVFYMHVRGVDTIMVLSYLHIMKKIYLKNYVTAESDG*
Ga0123380_113799	Ga0123380_1137992	F101069	MKTITIDLTDKQHCMLSRIAKGDKRKVSDLIYLALSRGFEYMYCETALHIDKVDSDYTDKEKKQIAKNKKLEASKGWSDLDYDEKQKRGWEHVCSVMCNYPHDNDFMPGFSESLERNATEGLKENE*
Ga0123380_113819	Ga0123380_1138191	F002029	LKRCLLFPNTPSKMRSVAFAIVTVAAARRANIKEHQPGWGDDPLDEFAIGQTEWPDCLTIPTFPGKCPIADHPGACYRTDGRMWSCWADWEESSDAECQQMTLNDEIVGFEGACKYHDYGRVMSIAEVPDCFDVNECLAECHPITDKWGACYVDDKEGVERAQRCLCAPMPGASGDAFIQTLLRGACLTSQIGYLDRAYNGLCKFPDERVQPVYQCESIPTFNARNSAVACNPGVGFNVACFSVRRRTPWQCASEAEMNPSCRTTQLVPQDGSPFYDGACVFEGAEAWSTAMIYEEP*
Ga0123380_114208	Ga0123380_1142082	F091427	MLILGVYYAGISTTISLTNLLVTRRTLAMSGLRNRRILLPFISIAILLMLRALAVITPVLGSAMLMLALDRH*
Ga0123380_115080	Ga0123380_1150801	F042166	DKPKFLDSHVSRIKEGWDETKEKASARLTLLNNTKAAWEGYGAGLENIAIEFEKAEEEIKKIKKRFNLAAAQDDLAKRKQIFNDTKNTIENMFAEIQHNYDVMTMTLPEDKKDFVKKEVKAVSEKLEVVGRFKEKVDKIDEFVTNLDNFDKTLKMVDSWMTEADKQLN
Ga0123380_116419	Ga0123380_1164191	F006551	GTDFDCTVESASGTIGTDGVLTDDVLRTFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIANPYGEALVQVDVNGIQTFKGTGTGIHVDSIYGVPFIPTKDAPSGGGNEIGRLFALDTSDAEGYGYPRIGIQVAIPTEYYEATRRSAGYPFVNNAFVEKGVFRTMGETVCRH
Ga0123380_116549	Ga0123380_1165492	F015413	MESHDLEKQVEELLAAPKFEQSAEFEQLLPKGILGKDMLIGSAGTALSVQMGNIVGKFLPIGGLPSGTSSILAGILLQKFMGSNANIKKLSEGIIQGGIATAMTPFTSGLIPQQFSQEKKVEHTEELNPIVEGVMW*
Ga0123380_116932	Ga0123380_1169321	F001583	YKTYYIMFTNKHLNVDQLTRFMVLHYFTP*YYLYLVKLHIMFCHES*DTDSGENTYEDKTGSYIS*FYDGFLKEIQDA*Y*TIFAFMYFFMHHFQGATVNYFFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVTPSHYEGLM*MGLWFVLLGGLPIIYN*YNSNNNYLPII
Ga0123380_116945	Ga0123380_1169452	F060086	LDSNLLLLSSRQGADRKRQYLYDHETPLLVDLADLLY*
Ga0123380_117446	Ga0123380_1174462	F030135	LATLSSFTDIWHSTFAGCQFPDAILPGREAFDLVAGPLN*
Ga0123380_118582	Ga0123380_1185821	F001707	SLEFFLNTPQHFGTMLASRAQSLTFGARYARTVASPWGAEGWRHNKTDFAKWVKEASTQPNSKAKREFYGYLQMAFGDVDVDKDGKINAQEFDYLCEKVAAMPRRFGYAPSWEAEYGGSVEKRTAARKAMFDAVDAKQGAARGWIGAAQFTDWATTHIAGKIAGLDTASEVDFYHVSNYSEAEFLKAIEVAVTNKNSREYASLYEFLLTAFVETDATCRGEITFSEFNKLIERAAAVPRTFGLAPPDGTAEARKAIFESMDDTKTGLITFRKFLEWTVTHTNGKVEAHKAGKGYKK*
Ga0123380_118753	Ga0123380_1187532	F009987	MLNLIGNALGLGLKIMDKIDKNSDKPSFEEFKERKKEMDKSLADGDVNGIDSMFEYLAERARAGKTGRRG*
Ga0123380_119407	Ga0123380_1194071	F101917	QLLIGHNMATQNTFVIEYGLTVGSTEIITSAGKLVASAISELDTDDLSEGSTNQYFTTSRFNTSFDTRLASATIDGGTI*
Ga0123380_119625	Ga0123380_1196251	F065809	HLHSISFTAAAMAFRGGVLAMGVQLAQSETYCPTLGDFDIAWGSVSSQGNGWRVDGEGGVHGRTSWNLLGGYIEFDMDVCGAQTGVNNNFYTISPQGGPSSGYCDIQTNDSPICMELDIIENNGKCLGQTTWHVWGNKNGGCDQNGCYGQYHLDDGCQFHMRTEFGEDGSITQYRNGQVIAVNGGPSGTEKAQIKQNMQNTGASMASTQWTGWVPDDGSCG
Ga0123380_120168	Ga0123380_1201681	F090416	LLVNNDLTVDYNQIVKRDLTVYSNLLVNNNLTVDYNQIVKRDLTVYSNLLVNGYEVIDGDLVVKKDVIIDKNLYLEGTLRASNLEVIGEKTIIDTQTYETENLHIMNDSADGASVKIEHRDNINNILEASNLSDNFVIIDKEVRLGINKVPIAQLDVNGDAYIETDLIVNKDVFINRNQIVEGSSIIKADQLVKGNQIINGDLEIDSNQLVKKDLTVY
Ga0123380_120211	Ga0123380_1202111	F000183	QQSCARAPADQQQACQTTATGLLFCQLIQRSKPEMAAEANCVQHQNDYVHDAAPAAPSFTQTFMERAPEDDLAQEMTHDLEMNFNKIAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLTHLHEDEAPVETDKLKPFH*
Ga0123380_121026	Ga0123380_1210261	F002556	MLAMRFGDTDVDKDGKINAAEFDGLCEDVASLPRRFGLAPSWEKEYGTVERRTASRKAMFDMLDLRQGPPRGWIGLEQFVNWATDHLITKVATIDIGADVDYYHIEQYGEHQYLSHLEEAVTDKNSRAHASLYEFLLAIFTECDSRSTGVLTFAEFDLLLSRAAEVPRTFGLAPPEASKEVRKQFFDSMEDKQMGGVTFRLLLAWTIEHSKGKIALQKSGKGYKK*
Ga0123380_122685	Ga0123380_1226851	F044287	MLAPVRSVAQPASARAFSAASPWGTDHWRHSKAAFKDWTKAAVAPGVSREKREFFGFCALAFGDVDTNKDGFINLEEFDRLLETVAAVPRRYGLAPVSTVSTLERQMAHKKLFDQLDTKAGPARGVLGLDQFVEWAFDHVISKIGKVPAKDVGLYQVQDYTEEEYIGFV
Ga0123380_123250	Ga0123380_1232501	F003081	VELREEMFNDTRFGAEVFYTHLRGVDTIMILSYLHILKKIYLKNYVNTEADG*
Ga0123380_123267	Ga0123380_1232672	F019659	VLLLQFKILLPEGIDTINHGLDKLDLRVTKTMFVGNVIGVSSLATRFTTGTTGLQVKSLTPGLQAINAVLGPAGQVNVDGGTHASAQVGGARVNVTELGGEQEVLARFSLDGVTDSLDASGETLEDSLDITSLLHGDDTELI
Ga0123380_123476	Ga0123380_1234761	F000981	LDTKNGPARGVLGLDQFIEWAYDHVVTHVPKVPAKDVGLYHVEDYSEEEYIGFVEKAVNNPGSYEHASFYNFILNCFVEADEQCQGRITYDQFDKLLSRAATVPRHFGLAPPESSTESRKKMFDELELQRGGKGTGYVTARTFWEWTVVHVRGMIELQKAGKGWRENH*
Ga0123380_126933	Ga0123380_1269331	F000491	IMLAPVRSAARPAVRTFSASPWGTDHWRHDKQAFKAWAKEASEPGSSKAKRELYGFLALSFGDVDTDKDGLINAEQFDQLLAEVAALPRRYGLAPLDVGDAVSRAVNHKILFDSLDTKNGPARGVLGLDQFIEWAYDHVVTHVPKVPAKDVGLYHVEDYSEEEYIGFVEKAVNNPGSYEHASFYNFILNCFVEADEQCQGRITYDQFDKLLSRAATVPRHFGLAPPESSTEARKKMFDELELQRGGKGTGYVTARTFWEWTVVHVKGMIELQKAGKGWRENH*
Ga0123380_127203	Ga0123380_1272032	F097458	PISLSLTFAALLPRRGISALADTPRLFPRHRIPIDSRYELLGSPILFDTRTLEVRRQIKNK*
Ga0123380_128804	Ga0123380_1288041	F000981	HKILFDSLDTKNGPARGVLGLDQFIEWAYDHVVTHVPKVPAKDVGLYHVEDYSEEEYIGFVEKAVNNPGSYEHASFYNFILNCFVEADEQCQGRITYDQFDKLLSRAATVPRHFGLAPPESSTEARKKMFDELELQRGGKGTGYVTARTFWEWTVVHVKGMIELQKAGK
Ga0123380_129602	Ga0123380_1296022	F052646	MKKIILIGLCLLFFLGNKPTTANQHETTVPLSDILLYCNTPEFIRNMAENDYMLGLAASGVVNDDRHRTLISMDLLMNPSNKQWAIIFNYAKGNLSCIIGGNHLKLFSPKK*
Ga0123380_130423	Ga0123380_1304232	F009987	MINLIGNALGLGLKIMDKIDKNSDKPSFEEFKARKKEMDETLADEDVNGIDSMFEYLSERARAGKTGRKG*
Ga0123380_131323	Ga0123380_1313231	F036714	MESATNMLKNGATPQVVDFAEETLSEVSGVVIPAIINESLNDQRFIYALHSRFQDILDTLSSENQEVFQLNAEEQAASATHKGCRDMEAGECNGKRTCEMELYRRWTVWVTEEEELREIHAQIDGHFCPPGSNGTLHAFRVAAVGPMQAYMAQKIVVDEAE