3300009206: Microbial communities of wastewater sludge from Singapore - Sludge11_b2_February

Overview

Basic Information

• IMG/M Taxon OID: 3300009206
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117969 | Gp0126339 | Ga0103750
• Sample Name: Microbial communities of wastewater sludge from Singapore - Sludge11_b2_February
• Sequencing Status: Permanent Draft
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 232203882
• Sequencing Scaffolds: 24
• Novel Protein Genes: 27
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1
Not Available	13
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified ssDNA viruses → Circovirus-like genome RW-C	3
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Wastewater Sludge From Singapore
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wastewater Sludge → Microbial Communities Of Wastewater Sludge From Singapore

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore
• Coordinates
  • Lat. (^o): 1.2
  • Long. (^o): 103.45
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F000606	Metagenome / Metatranscriptome	993	Y
F001679	Metagenome / Metatranscriptome	653	Y
F004323	Metagenome / Metatranscriptome	443	Y
F007073	Metagenome / Metatranscriptome	358	Y
F008498	Metagenome / Metatranscriptome	332	Y
F009934	Metagenome / Metatranscriptome	311	Y
F011154	Metagenome / Metatranscriptome	294	Y
F014467	Metagenome / Metatranscriptome	263	Y
F014836	Metagenome / Metatranscriptome	259	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103750_1003687	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1568
Ga0103750_1007210	Not Available	1174
Ga0103750_1008347	All Organisms → cellular organisms → Bacteria	1102
Ga0103750_1010572	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified ssDNA viruses → Circovirus-like genome RW-C	992
Ga0103750_1011805	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	946
Ga0103750_1013172	Not Available	902
Ga0103750_1013706	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	888
Ga0103750_1014691	Not Available	863
Ga0103750_1016245	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	828
Ga0103750_1016757	Not Available	817

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103750_1003687	Ga0103750_10036872	F091427	MLILGVYYAGISTTISIFNLLSTRRNLSIPGLRNRRILLPFITITVLLMLRALFVITPVLGSTMLMLELDRH*
Ga0103750_1007210	Ga0103750_10072101	F008498	KGSVTYKNQPAINKTKGNVPLAGTSHIYRVQKKLWNDSIEDVLQGLFIGRTLHVCCGKSLLGDVRLDADAENNPDIICDASKMQDFVKDNEFETVICDPPYNGNFQWNHDLLAELSRVASKRIIFQHWFIPANPTGTYKKAQEKFLLSDVLVWQPKTYFGRVQVVSVFDAVS*
Ga0103750_1008347	Ga0103750_10083471	F037503	MPLGAASWLSFEEVELPIGLGGVKSYQIQMNSECFKIYTAVRAWVLRSKSERERTLTNS*
Ga0103750_1010572	Ga0103750_10105721	F052619	LKKVTLQRWGLALLTEVPMATKRNKKSAGSRRTRQDKIPVNSQREIAMRSPVYRPVYKFSRTVTERYDISTDGINPTLVAFVFSLDQLPNYTDFTRLFDMYKIVKIDVQWNPEYTELTDAALVSNAVNVYFNSVIDLTDSSAPSSVDELLQSQQLQQTAITKVHSRKWEPTFLMGGLVPCSCWLPTSSSSERHYAVKVAIPPTGVAMTFRVRAKFSLEFANVN*
Ga0103750_1011805	Ga0103750_10118051	F039594	ITYDLLVEHLHDYILIQPDTHKVSGFELNNWDYDFYYSISPEPQSMRWRVVVTDGQGVLVTVRNHRCPLQATWVKEVWCDAAYYDRPWMCDIEIPTRAAHPGDNAYFVSVYGKNATYSIAFWRGRENCHEFTGAGRNEGLDFCAGLIPYATWRWENYHNLDNEARCFFNELYEHFKCQPCWNGVSLECNATLQAFACYESFKRCDEGGFYTGTCRDSCNAVVYECANWFESVDLEHYNCSSSRYLDSNAGVCTGSSDFSTFNAGTQHFLVEDPDLILFKSSPDSVSSSSAISFSVALSVIALILTLII*
Ga0103750_1013172	Ga0103750_10131721	F007073	KIILVVFGLACAVAALDAVGEGFASTPDQVVNPPNWHGTWTAQGRYGGVMYACPVGERVYGVYSNAGFFIGRINGRELEGTWYEGGRGDRNDWQGAFRITLSADNLEFDGYWHRVTQDGTEYRWNEQRLGAPWPSAPSHEQCLVPYDEELTGTHYTVPGYGREPVSFALCRDRWDQIYGSFGSPDGYVEGWSVDNASGFQGYKYDSNGRSGAFILRNISPTEARGFYWRGRLATQNIATAEEVVLHRTSYISNLEDCERVGPGFLERLRGPTNSAGALSVSLALVAVLFFALF*
Ga0103750_1013706	Ga0103750_10137061	F000606	MKAALALIFFACVAGSMAADARNEMIQQLIQQGQVLAQGVFGQLQQQILALAQQAVGQLSTLFGSFGRFDFNAVLDQFKPLVNQLINQALGGVLGSLSGLIGGRASFDFGAIFNGLFQELSKPLTEMGQHILNQGLAAVLGSFGSRGFADLFAGLQQQIGTAVSAAQGALTGALSNLASLGSSILDASKPHWEQLQEQLIGHGLNALGSISETIGNLHGTITGGR*
Ga0103750_1014691	Ga0103750_10146911	F025295	EIMVSGPGADTELLRRREVPTPDKQKLITRKGNLP*
Ga0103750_1016245	Ga0103750_10162451	F004323	MPPDGLHRLEGRATPAVANLSPVARDYPSRAFSGVFQAVALRL
Ga0103750_1016397	Ga0103750_10163971	F000203	AGPKWGMGVRHALFPVLALGASGAASFPTLFSTASGVFGLVAGPSSASPSLNFE*
Ga0103750_1016757	Ga0103750_10167571	F009934	MRPVTPLAVENSVGKPAANLAPNVGMGKRAWRTPTPTLS
Ga0103750_1016834	Ga0103750_10168342	F000203	KWGMGVRQALFPGLALGAKLAASFPTLFSTASGVIGLVAGPSSSLRALDFE*
Ga0103750_1020502	Ga0103750_10205021	F042865	MSLRVPDYETFLGADDFNKRIWWQFMQSVVNDLPLNGNVAPENIVRANKSCLYIQSTGGTAVLWFNPNGNGSATGWIVK*
Ga0103750_1021073	Ga0103750_10210731	F052619	VNRRARQDKTPVNSQTGILMKCPVYRPVYKFSRNVEARYDISTNGIAAELGAFTFSLDALPSYTDFTNLFDMYRITRIEVCFQPEYTELTDAALVSNAVNCYFNTAIDLVDASPPVNVDDLLQYQQLESTSITKQHVRKWNPTILMGGNIPCSCWLPTSNPSESHYALKYAIPPTGVAMTFRSRVRVHLEFANVN*IFLTPPLIHCLLYCLVNNEN
Ga0103750_1021448	Ga0103750_10214481	F052619	KSAVNRRARQDKTPVNSQTGIVMRCPVYRPVYKFSRVVESVYDIPTNGIAAAVGAFDFRLDVLPAYTDFTSLFDMYRITSIEVCYQPEYTELTDAALVSNAVNVYFNTAIDIADVSAPANVDEVLQYQQLASTPITKQHVRKWTPTILMGGNVPCSCWLPTSNPSERHYALKYGIPPTGVAMTFRSRVRFHLEFANVN*
Ga0103750_1022279	Ga0103750_10222791	F001679	MSWRQEAKKGVEDCDKLGGLVKRELIPRFPNRRGVNS*
Ga0103750_1024143	Ga0103750_10241431	F014467	MKKTTTAVVATIAALALGSSALATMQLQKEYKAKDPKANCASCHTEKMPKKDKADLNDLGKKVKAAKGADGKYDWSKV*
Ga0103750_1024957	Ga0103750_10249571	F014836	VAPRNMRVFLYLALVAIIFGTVECSCPAVQGYCPQEMIYQGCHCFHEWNDANRVGNWTFPENWLQLYEPAWVSFVSIAGDNTVTVDVERRVNELYVGPNRWDTTRLVIDEDLTIVYDDVPVISAVRGYRLPNGVVRLVIQGKGFGFVSDDIQVTVHEYYEIDGDSNVEDREEFVYDCQHVTLTYRDAKIECNIAPTRPMPYTLTVQVAANGMVTDHQFLSKYIE*
Ga0103750_1025964	Ga0103750_10259641	F030999	KMNWSLIILGLVALSSVAIADNSYLIFAPKLFKVGWENQLSVFIASAPQPVEVKYILTVGPKRVEGKITVNAGETRNATLALPSDFPVGPGELIMVATGGLRFEERRDLIVYDNRHVILVQTSASTYRPGDMMDIRVVVTTDELIPVEKGEVLIEIYDAALKLIGRFPQMLIKSGITETVRYPISEHSNIGTWLISATVSNSTSSLEVLVAEPITKAFDLKAIFQ
Ga0103750_1028843	Ga0103750_10288431	F098810	MSVQHRFWWRVVRKYEGDEMWVPILRLAFVHSNGAISLKQGLPHQRKSYRVIQRGLRRYLGLKVSPTRAQQLANEALAHAVFAFYRRALPSNVDRSTVILRLTAVITEGRREKDKTRRVKEKGVHRVADEVHLWLPPKYAGDSADRPNPEPE
Ga0103750_1031428	Ga0103750_10314281	F061786	RMGANNTKGLYYCETIYPPENGISCIPPEKLEKAIKKGLIPPKPADDEEDLDGDMDEIIDKCIKEVWTHYDPKAVGFINKKQTQKFFQDALDLVALRKGVKEKDLFQGRPKGPAFEAAFKKVNTSGDGKVNYEQFEEFINSYDLDEAVALVTGGDTEVSIDTTKVELVDNSSLPAGGGPVKGKIQYRDYSALED*
Ga0103750_1032294	Ga0103750_10322941	F026814	LLVLAFVSAVLASTPLHPRWPASFSTTAIVHFGDRPRPDFTRWFYSKNQNIDRLDGLSEFAGELYFATRFFNHNQQREYAVFYQRDSSVQCYTRAITNPLPQPNFSNFTYIGQALINYVPVYHWAHRRGNDLFQFYDTQDTRQPVRFDAEQRGRPAIQINYSEFDSGSQSPNIFTIPSQILAICTPTQNNNAFSVGF*
Ga0103750_1032534	Ga0103750_10325342	F058934	MRQFSYPNSQFTTILGGASIGWKLNVYNTGTTDKASIYSNLAQTTPTANPVIADADGFLASFYWTGTIDVVLTDENDNIIDSANGIQDLVSTINAVVVAGNISLPYGAASGSGDTITATLPITSDFSDGGMFIVRANAANTGAANTPNLQVNSYASRRIKKIGGVALI
Ga0103750_1033353	Ga0103750_10333531	F051952	MPEFPRQTIAPDHFTTTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEEACILFLSFEKMVQKMSQHEAYRAKYGPEIFIFRAVLTGLEDVVSANPLDRLERMREVYGFYQGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKHKPKAFVGKGYGDHGTAKDMAYDGSPSWQEVAMADTN
Ga0103750_1033361	Ga0103750_10333611	F051952	MPKNPRQTIAPDHFTSTALSESSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTN
Ga0103750_1042307	Ga0103750_10423071	F056539	ARMNCKVAIFLLACLSVVSCQLVLLNPPGRGFVGDNARHAPCGITPTTTGNTVAWEQGTVREIEVQILGAGGGGVIEDRYSCVLQGGESNPIEPLFPIEGALKVQVPDWDFQIYRLHVRLPSFVCRGDTTMQLIYSTENGQEYFQCQDIILTYSSSSTLVASLVASIIFVVLVVL*
Ga0103750_1042376	Ga0103750_10423761	F011154	SYPEGIRLLLCISTGGRLGRSPEGDRPNERRRKAGQSERPNREGHAASAGPVKTFREVGGVKNDTADLWTKGNLRVKRRDPWHRANALSQAAAVPALSGEDADPKTQTCLDLVRKPVAQPPVQAS*