3300022652: Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_3 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300022652
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132838 | Gp0267152 | Ga0232059
• Sample Name: Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_3 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 115528742
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anaerobic Ammonium Oxidizing Microbial Communities From Anammox Membrane Bioreactor (Mbr) In Uc Berkley, California, United States
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Bioreactor Biomass → Anaerobic Ammonium Oxidizing Microbial Communities From Anammox Membrane Bioreactor (Mbr) In Uc Berkley, California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 37.8719
  • Long. (^o): -122.2585
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F041060	Metagenome / Metatranscriptome	160	Y
F091427	Metagenome / Metatranscriptome	107	Y
F099502	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0232059_1042497	Not Available	817
Ga0232059_1089300	All Organisms → cellular organisms → Bacteria	745
Ga0232059_1213360	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	626

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0232059_1042497	Ga0232059_10424971	F000344	MRPRSAPAALSGVGEHTARESESAQCCAAGKERVANAHPH
Ga0232059_1089300	Ga0232059_10893002	F099502	GDSNMTKQTNADQESAIGAILGWGGLGLFALWFAWQVGSPLIIGEKWANKQNDAIEVVKNMKPNGTESLYDMIRAFSLKAKENDFFVGEFSWSAIQREGPEYEVTLLWTEGQAKKVAIWRVNLDNKEIRPQGEAAGLPQRLAAGPPAKGSTPK
Ga0232059_1213360	Ga0232059_12133602	F091427	MLILGVYYAGISTTISLINLLATRRTLSIPGLRNRRILMPFISITILLMLRALAVITPVLGSAMLMLALDR
Ga0232059_1257506	Ga0232059_12575061	F041060	MRPNTPLAVENGVGKLAALPGAKCQHGKESVAHSHP