Metagenome / Metatranscriptome Family F072949

Overview

Basic Information

• Family ID: F072949
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 120
• Average Sequence Length: 51 residues
• Representative Sequence: MAKRKPVVNKVVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAAKYAI
• Number of Associated Samples: 44
• Number of Associated Scaffolds: 119

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 82.50 %
• % of genes near scaffold ends (potentially truncated): 18.33 %
• % of genes from short scaffolds (< 2000 bps): 42.50 %
• Associated GOLD sequencing projects: 39
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (73.333 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen (59.167 % of family members)
• Environment Ontology (ENVO): Unclassified (100.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut (64.167 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 26.58%
  β-sheet: 0.00%
  Coil/Unstructured: 73.42%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF06941	NT5C	14.29
PF14207	DpnD-PcfM	4.20
PF00436	SSB	3.36
PF04545	Sigma70_r4	2.52
PF00877	NLPC_P60	1.68
PF00692	dUTPase	1.68
PF13479	AAA_24	0.84
PF02719	Polysacc_synt_2	0.84
PF12850	Metallophos_2	0.84
PF07021	MetW	0.84
PF10881	DUF2726	0.84
PF08275	Toprim_N	0.84
PF10127	RlaP	0.84
PF01471	PG_binding_1	0.84
PF09414	RNA_ligase	0.84
PF01832	Glucosaminidase	0.84
PF14579	HHH_6	0.84
PF13385	Laminin_G_3	0.84
PF00535	Glycos_transf_2	0.84
PF09643	YopX	0.84
PF10145	PhageMin_Tail	0.84
PF08239	SH3_3	0.84
PF00149	Metallophos	0.84

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG4502	5'(3')-deoxyribonucleotidase	Nucleotide transport and metabolism [F]	14.29
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	3.36
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	3.36
COG0451	Nucleoside-diphosphate-sugar epimerase	Cell wall/membrane/envelope biogenesis [M]	1.68
COG0702	Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains	General function prediction only [R]	1.68
COG0717	dCTP deaminase	Nucleotide transport and metabolism [F]	1.68
COG0756	dUTP pyrophosphatase (dUTPase)	Defense mechanisms [V]	1.68
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	1.68
COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	Cell wall/membrane/envelope biogenesis [M]	1.68
COG0358	DNA primase (bacterial type)	Replication, recombination and repair [L]	0.84
COG1087	UDP-glucose 4-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.84
COG1088	dTDP-D-glucose 4,6-dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.84
COG1089	GDP-D-mannose dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.84
COG1091	dTDP-4-dehydrorhamnose reductase	Cell wall/membrane/envelope biogenesis [M]	0.84

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.33 %
All Organisms	root	All Organisms	26.67 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.33 %
cellular organisms	root	All Organisms → cellular organisms	15.83 %
Viruses	superkingdom	All Organisms → Viruses	10.83 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.33 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	15.00 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	5.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.00 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.83 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.33 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	10.83 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	5.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.00 %
Candidatus Thermoplasmatota	phylum	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota	0.83 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.33 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	10.83 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	5.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.00 %
Thermoplasmata	class	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata	0.83 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.33 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.00 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples	2.50 %
unclassified Thermoplasmata	no rank	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata	0.83 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.83 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.33 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	5.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.00 %
Firmicutes bacterium CAG:884	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:884	2.50 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.83 %
Thermoplasmata archaeon	species	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	0.83 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2061766007|rumenHiSeq_NODE_4160180_len_55798_cov_0_761138	Not Available	55848
2061766007|rumenHiSeq_NODE_4177190_len_112620_cov_0_653152	Not Available	112670
3300000302|Cc83DRAFT_1000986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4623
3300003523|DRAFT_10051486	Not Available	2872
3300009869|Ga0130078_12225075	Not Available	626
3300009869|Ga0130078_13082114	Not Available	566
3300009869|Ga0130078_13613304	Not Available	849
3300009871|Ga0130077_13433515	Not Available	709
3300009872|Ga0130079_10198805	Not Available	2230
3300009872|Ga0130079_10598877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:884	2629
3300009872|Ga0130079_13560152	Not Available	539
3300012007|Ga0120382_1003106	Not Available	7226
3300012007|Ga0120382_1003106	Not Available	7226
3300012973|Ga0123351_1285802	Not Available	613
3300012979|Ga0123348_10002604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	11881
3300012979|Ga0123348_10498587	Not Available	673
3300012979|Ga0123348_10759677	Not Available	546
3300012983|Ga0123349_10000820	Not Available	27824
3300012983|Ga0123349_10014251	Not Available	5644
3300012983|Ga0123349_10279101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1150
3300012983|Ga0123349_10686415	Not Available	720
3300012983|Ga0123349_11076248	Not Available	575
3300012991|Ga0157148_1060123	Not Available	682
3300014826|Ga0120386_1064056	Not Available	833
3300021254|Ga0223824_10121665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2374
3300021254|Ga0223824_10427581	Not Available	1113
3300021255|Ga0223825_12683325	Not Available	136489
3300021256|Ga0223826_10081046	All Organisms → Viruses → Predicted Viral	2957
3300021256|Ga0223826_11103181	Not Available	535
3300021387|Ga0223845_10880840	Not Available	1717
3300021399|Ga0224415_10971271	Not Available	627
3300021400|Ga0224422_10578068	All Organisms → Viruses → Predicted Viral	3174
3300021400|Ga0224422_11085565	Not Available	11084
3300021400|Ga0224422_12064460	Not Available	1166
3300021400|Ga0224422_12694120	All Organisms → Viruses → Predicted Viral	2859
3300021426|Ga0224482_10000099	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	132386
3300023026|Ga0233364_1009565	Not Available	965
3300023026|Ga0233364_1022954	Not Available	597
3300023051|Ga0233379_1017428	Not Available	971
3300024345|Ga0255062_10140500	All Organisms → Viruses → Predicted Viral	1128
3300026549|Ga0256404_1020943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	6927
3300028591|Ga0247611_10000176	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	131615
3300028591|Ga0247611_10040425	Not Available	4771
3300028591|Ga0247611_10111658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2836
3300028591|Ga0247611_10134866	Not Available	2582
3300028591|Ga0247611_10959459	Not Available	882
3300028591|Ga0247611_11220484	Not Available	755
3300028797|Ga0265301_10000106	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	136014
3300028797|Ga0265301_10000118	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	125690
3300028797|Ga0265301_10000121	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	125215
3300028797|Ga0265301_10000135	Not Available	119593
3300028797|Ga0265301_10000150	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	111499
3300028797|Ga0265301_10000168	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	105241
3300028797|Ga0265301_10000385	Not Available	65834
3300028797|Ga0265301_10001897	Not Available	25854
3300028797|Ga0265301_10002083	Not Available	24120
3300028797|Ga0265301_10002090	Not Available	24064
3300028797|Ga0265301_10003996	Not Available	15118
3300028797|Ga0265301_10004600	Not Available	13875
3300028797|Ga0265301_10008008	Not Available	9804
3300028797|Ga0265301_10018871	Not Available	5737
3300028797|Ga0265301_10024506	Not Available	4903
3300028797|Ga0265301_10029901	All Organisms → Viruses → Predicted Viral	4370
3300028797|Ga0265301_10070837	Not Available	2675
3300028797|Ga0265301_10079490	Not Available	2512
3300028797|Ga0265301_10125415	Not Available	1955
3300028797|Ga0265301_10196113	Not Available	1531
3300028797|Ga0265301_10393668	Not Available	1035
3300028805|Ga0247608_10003386	Not Available	18647
3300028805|Ga0247608_10007029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	11680
3300028805|Ga0247608_10009044	All Organisms → cellular organisms → Bacteria	9959
3300028805|Ga0247608_10024426	Not Available	5627
3300028832|Ga0265298_10001832	Not Available	30925
3300028832|Ga0265298_10003275	Not Available	21588
3300028832|Ga0265298_10005394	Not Available	16068
3300028833|Ga0247610_10130762	Not Available	2533
3300028833|Ga0247610_10733907	Not Available	1020
3300028886|Ga0256407_10003188	Not Available	29727
3300028886|Ga0256407_10011281	Not Available	12399
3300028887|Ga0265299_10009068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8793
3300028887|Ga0265299_10010836	Not Available	7955
3300028887|Ga0265299_10704498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	852
3300028887|Ga0265299_11720607	Not Available	503
3300028914|Ga0265300_10011156	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	6520
3300028914|Ga0265300_10013482	Not Available	5834
3300028914|Ga0265300_10565721	Not Available	776
3300029057|Ga0169682_103183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	6441
3300030772|Ga0061013_10071333	Not Available	2230
3300030772|Ga0061013_10234524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:884	2629
3300030772|Ga0061013_12473730	Not Available	909
3300030772|Ga0061013_12488809	Not Available	574
3300030772|Ga0061013_12873522	Not Available	1019
3300030772|Ga0061013_12881906	Not Available	686
3300031085|Ga0061018_12887387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:884	782
3300031085|Ga0061018_13433515	Not Available	709
3300031760|Ga0326513_10002640	Not Available	13192
3300031760|Ga0326513_10003604	All Organisms → cellular organisms → Bacteria	11211
3300031760|Ga0326513_10010017	Not Available	6742
3300031760|Ga0326513_10011490	All Organisms → cellular organisms → Bacteria	6318
3300031760|Ga0326513_10013730	All Organisms → cellular organisms → Bacteria	5833
3300031760|Ga0326513_10151332	Not Available	1968
3300031760|Ga0326513_10461328	Not Available	1142
3300031760|Ga0326513_11178536	Not Available	669
3300031867|Ga0326511_10005076	Not Available	10420
3300031867|Ga0326511_10234374	Not Available	1771
3300031867|Ga0326511_10802345	Not Available	929
3300031867|Ga0326511_11847608	Not Available	549
3300031992|Ga0310694_10278943	All Organisms → Viruses → Predicted Viral	1711
3300031993|Ga0310696_10047373	Not Available	4747
3300031993|Ga0310696_12095937	Not Available	551
3300031993|Ga0310696_12101666	Not Available	550
3300031998|Ga0310786_12398301	Not Available	523
3300032007|Ga0310695_10008479	All Organisms → cellular organisms → Bacteria	15871
3300032030|Ga0310697_10448564	Not Available	1341
3300032038|Ga0326512_10000644	Not Available	29927
3300032636|Ga0352980_1007793	Not Available	671
3300033463|Ga0310690_10093956	Not Available	3440
3300033463|Ga0310690_10103826	Not Available	3262
3300033463|Ga0310690_10428356	Not Available	1502
3300033463|Ga0310690_12254300	Not Available	571

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Class

Habitat	Taxonomy	Distribution
Mammals	Host-Associated → Mammals	98.33%
Human	Host-Associated → Human	0.83%
Birds	Host-Associated → Birds	0.83%

Category

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Mammals → Digestive System	98.33%
Digestive System	Host-Associated → Human → Digestive System	0.83%
Digestive System	Host-Associated → Birds → Digestive System	0.83%

Type

Habitat	Taxonomy	Distribution
Foregut	Host-Associated → Mammals → Digestive System → Foregut	87.50%
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	10.00%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.83%
Oral Cavity	Host-Associated → Mammals → Digestive System → Oral Cavity	0.83%
Ceca	Host-Associated → Birds → Digestive System → Ceca	0.83%

Subtype

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	80.00%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal	10.00%
Unclassified	Host-Associated → Mammals → Digestive System → Foregut → Unclassified	7.50%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.83%
Unclassified	Host-Associated → Mammals → Digestive System → Oral Cavity → Unclassified	0.83%
Unclassified	Host-Associated → Birds → Digestive System → Ceca → Unclassified	0.83%

Habitat

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	59.17%
Cattle And Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen	10.00%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal	7.50%
Fungi-Associated Bovine Rumen	Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen	7.50%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	5.83%
Elk Feces	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces	2.50%
Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen	2.50%
Bovine Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen	1.67%
Human Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated	0.83%
Camel Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Camel Rumen	0.83%
Pig Oral Cavity	Host-Associated → Mammals → Digestive System → Oral Cavity → Unclassified → Pig Oral Cavity	0.83%
Chicken Cecum	Host-Associated → Birds → Digestive System → Ceca → Unclassified → Chicken Cecum	0.83%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2061766007	Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470	Host-Associated
3300000302	CECUM_8-3	Host-Associated
3300003523	Camel rumen microbial communities from Jandagh-Isfahan, Iran - Sample 1	Host-Associated
3300009869	Cow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Corn Stover. Combined Assembly of Gp0148673, Gp0148674	Host-Associated
3300009871	Cow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Rumen Fluid.Combined Assembly of Gp0148671, Gp0148672	Host-Associated
3300009872	Cow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Switchgrass. Combined Assembly of Gp0148675, Gp0148676	Host-Associated
3300012007	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1009	Host-Associated
3300012973	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Day 36 Metagenome	Host-Associated
3300012979	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung B1 Day 1 Metagenome	Host-Associated
3300012983	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C2 Day 2 Metagenome	Host-Associated
3300012991	Pig viral communities from oral cavity of healthy adult pig - Individual 0	Host-Associated
3300014826	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1366	Host-Associated
3300021254	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated
3300021255	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated
3300021256	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated
3300021387	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated
3300021399	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly	Host-Associated
3300021400	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly	Host-Associated
3300021426	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated
3300023026	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C2	Host-Associated
3300023051	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung F1	Host-Associated
3300024345	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 RNA GHGhigh gp2 (Metagenome Metatranscriptome)	Host-Associated
3300026549	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_01	Host-Associated
3300028591	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2	Host-Associated
3300028797	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04	Host-Associated
3300028805	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2	Host-Associated
3300028832	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_01	Host-Associated
3300028833	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2	Host-Associated
3300028886	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04	Host-Associated
3300028887	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02	Host-Associated
3300028914	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03	Host-Associated
3300029057	Human fecal microbial communities from mother in Denmark - 383_M	Host-Associated
3300030772	Coassembly of Cow X Switchgrass	Host-Associated
3300031085	Coassembly of Cow X and Y Rumen Fluid	Host-Associated
3300031760	Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518	Host-Associated
3300031867	Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518	Host-Associated
3300031992	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2 (v2)	Host-Associated
3300031993	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02 (v2)	Host-Associated
3300031998	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03 (v2)	Host-Associated
3300032007	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04 (v2)	Host-Associated
3300032030	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2 (v2)	Host-Associated
3300032038	Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518	Host-Associated
3300032636	Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-2 switchgrass (Eukaryote Metatranscriptome)	Host-Associated
3300033463	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04 (v2)	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
_HiSeq_05855170	2061766007	Bovine Rumen	MAKRPMKTTKAVVDKNAAQFIRTAANLARKGKTNKKLHGRNANPKAIKYA
_HiSeq_27169550	2061766007	Bovine Rumen	MAKRKVTVNKVVVDKNAAQFMRTAANLARKGKTNKKLHGRHANPKALKYDMGV
Cc83DRAFT_10009865	3300000302	Chicken Cecum	MAKKRNNKVAKVVVDKNAAQFMRTAQNLARKGKTNKKLNGRNANPRAKKYAIA*
DRAFT_100514863	3300003523	Camel Rumen	MSKRKVQVKKMVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAIKYAI*
Ga0130078_122250752	3300009869	Rumen	MSKRKVQVKKMVVDKNAAQFMRTAANLARKGKTNKKLRGRNANPKAIKYAI*
Ga0130078_130821141	3300009869	Rumen	MAKRKPVVNKVVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAAKYAI*
Ga0130078_136133042	3300009869	Rumen	MAKRKVTVNKVVVDKNAAQFMRTAANLARKGKTNKKLHGRHANPKALKYDMGV*
Ga0130077_134335151	3300009871	Rumen	MAKRKVQVKKVVVDKNQAQFIRTAANLARKGKTNKKLHGRNANPKAAKYAI*
Ga0130079_101988052	3300009872	Rumen	MAKRKVQVKKVVVDKNQAQFIRTAANLARKGKTNKKLHGRNANPRAAKYAI*
Ga0130079_105988774	3300009872	Rumen	MAKNRGAKKPTVVVDKNAAQFIRTAANLARKGKTNKKLNGKNANLKARKYAHNI*
Ga0130079_135601522	3300009872	Rumen	MIIMAKRKIVNKPVIDKNAAQFARTAANLARKGKTNKKLHGKNANAKAMKYNIA*
Ga0120382_10031063	3300012007	Sheep Rumen	VVDIMAKRKVQVNKMVVDKNAAQFMRTAQNLAKKGKTNKKLRGRNANAKALKYNIAVA*
Ga0120382_10031065	3300012007	Sheep Rumen	MAKRRISTPKVVVDKNAAQFMRTAQNLARKGKTNKKLKGRNANPKAAKYAIV*
Ga0123351_12858022	3300012973	Fecal	MAKRKSSSIGKVVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPRALKYNIEK*
Ga0123348_100026049	3300012979	Fecal	VINMAKRKMQMTKVVVDKNAAQFERTAANLARKGKTNKKLGRNPKAKKYAK*
Ga0123348_104985871	3300012979	Fecal	MELIIMAKRKVQVAKVVVDKNAAQFARTAANLAKKGKTNKKLNRNPKAKKYAVVV*
Ga0123348_107596772	3300012979	Fecal	MAKRRIQTVKVVVDKNAAQFERTAANLARKGKTNKKLGRNPKAAKYAR*
Ga0123349_1000082022	3300012983	Fecal	MAKRPMKTTKAVVDKNATQFIRTAANLARKGKTNKKLHGRNANPKAIKYA*
Ga0123349_100142514	3300012983	Fecal	MAKRRNNVAKVLVDKNAAQFERTAANLARKGKTNKKLGRNPKAAKYAK*
Ga0123349_102791014	3300012983	Fecal	MAKRKNNIVKVAVDKNAAQFERTAANLARKGKTNKKLNRNPKARKYAR*
Ga0123349_106864153	3300012983	Fecal	MKGVIIMAKRKGKVVNKVVVDKNAAQFMRTAQNLYKKGKTNKKLKGRNANPKAMKY
Ga0123349_110762481	3300012983	Fecal	MAKRKVNVAKVVVDKNAAQFERTAANLARKGKTNKKLGRNPRAKKYAK*
Ga0157148_10601231	3300012991	Pig Oral Cavity	MTKRKVVNKVVVDKNAAQFMRTAQNLARKGKTNKKLHGRNANPKAQKYAI*
Ga0120386_10640562	3300014826	Sheep Rumen	MAKRRISTPKVVVDKNAAQFMRTAQNLARKGKTNKKLKGRNANPKAAKYAIV
Ga0223824_101216651	3300021254	Cattle And Sheep Rumen	MAKRKSVTNKVVVDKNAAQFMRTAANLARKGKTNKKLHGRNANA
Ga0223824_104275811	3300021254	Cattle And Sheep Rumen	MAKRKSVTNKVVVDKNAAQFMRTAANLARKGKTNKKLHGRNVNAKAIKYAI
Ga0223825_1268332599	3300021255	Cattle And Sheep Rumen	MAKRKSVVNKIVVDKNAAQFMRTAENLARKGKTNKKLHGRNANLKATKYAK
Ga0223826_100810461	3300021256	Cattle And Sheep Rumen	MAKRKSVVNKIVVDKNAAQFMRTAENLARKGKTNKKLHGRNANLKAKKYDIAIA
Ga0223826_111031812	3300021256	Cattle And Sheep Rumen	MAKRKSVVNKVVVDKNAAQFMRTAQNLARKGKTNKTLHGRNA
Ga0223845_108808405	3300021387	Cattle And Sheep Rumen	KVVVDKNAAQFMRTAQNLARKGKTNKKLHGRNANPKAAKYAK
Ga0224415_109712712	3300021399	Cattle And Sheep Rumen	TMAKSKKVVNKIVVDKNAAQFMRTAANLARKGKTKTKLHGRNANLKAQKYAI
Ga0224422_105780686	3300021400	Cattle And Sheep Rumen	MAKRKSVVNKIVVDKNAAQFMRTAENLARKGKTNKKLHGRNANPKAAKYAK
Ga0224422_1108556513	3300021400	Cattle And Sheep Rumen	MAKRKIVNKPVIDKNVAQFMRTAANLARKGKTNKKLHGKNANAKAMKYNIA
Ga0224422_120644602	3300021400	Cattle And Sheep Rumen	MAKRKVVNKIVVDKNAAQFMRTAQNLARKGKTNKKLHGRNANPKAQKYAI
Ga0224422_126941201	3300021400	Cattle And Sheep Rumen	MAKRKVVNKVVVDKNAAQFMRTAQNLARKGKTNKKLHGRNANPKAQKYAI
Ga0224482_10000099172	3300021426	Cattle And Sheep Rumen	MAKRKSVVNKVVVDKNAAQFMRTAQNLARKGKTNKKLHGRNANPKAAKYAK
Ga0233364_10095652	3300023026	Elk Feces	MAKRPMKTTKAVVDKNATQFIRTAANLARKGKTNKKLHGRNANPKAIKYA
Ga0233364_10229543	3300023026	Elk Feces	MAKRKMQMTKVVVDKNAAQFERTAANLARKGKTNKKLGRNPKAKKYAK
Ga0233379_10174282	3300023051	Elk Feces	MAKRKVQTAKVVVDKNAAQFARTAANLARKGKTNKKLGRNPKAKKYAI
Ga0255062_101405003	3300024345	Rumen	MAKRKVTVNKVVVDKNAAQFIRTAANLARKGKTNKKLHGRNANPKAAKYAI
Ga0256404_10209437	3300026549	Rumen	MAKRNSVVNKVVVDKNAAQFMRTAENLARKGKTNKKLHGRNANLKAAKYAK
Ga0247611_100001767	3300028591	Rumen	MAKRKPITNKIVVDKNAAQFMRTAANLKRKGKTNKKLHGRNANPRALKYA
Ga0247611_100404255	3300028591	Rumen	MAKKPVKVVTKIVDKNAAQFMRTAANLARKGKTNKKLNGRNANPKAAKYAI
Ga0247611_101116583	3300028591	Rumen	MAKRKSVVNKIVVDKNAAQFIRTAQNLARKGKTNKKLTGKNANLKAKKYAI
Ga0247611_101348664	3300028591	Rumen	MAKRNSVVNKIVVDKNAAQFMRTAENLARKGKTNKKLHGRNANPKAQKYAI
Ga0247611_109594591	3300028591	Rumen	MAKRKVTVNKVVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAAKYAI
Ga0247611_112204842	3300028591	Rumen	YCNKGKGKVITMAKKNSVVNKVVVDKNAAQFMRTAENLARKGKTNKKLHGRNANPKAAKYAK
Ga0265301_1000010699	3300028797	Rumen	MSKKRVQVKKVVIDKNAAQFIRTAANLARKGKTNKKLHGRNANPKAIKYAI
Ga0265301_1000011883	3300028797	Rumen	MAKRKVQVKKPIVDKNAAQFMRTAANLARKGKTNKKLNGRNANLKAKKYALA
Ga0265301_1000012134	3300028797	Rumen	MAQRKKSVAKAIVDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAMKYNIA
Ga0265301_10000135139	3300028797	Rumen	MAQRKKVVSKPVVDKNAMQFIRTAANLARKGKTNKKLKSNLKAKKYAI
Ga0265301_1000015076	3300028797	Rumen	MAKRKPTVSKIVVDKNSAQFMRTAANLARKGKTNKKLHGRNANPRAAKYAI
Ga0265301_100001686	3300028797	Rumen	MAKRKPVVQKVVVDKNAKQFMRTALNLARKGKTNKKLHGRNANPKAMKYNIA
Ga0265301_1000038525	3300028797	Rumen	MAKRRPVVNKIVVDKNAAQFMRTAQNLARKGKTNKKLKGRNANPKALKYNIAIA
Ga0265301_1000189720	3300028797	Rumen	MAQKRKVATPKVVVDKNAAQFMRTAQNLARKGKTNKKLRGRNANPKALKYAI
Ga0265301_1000208316	3300028797	Rumen	MAKTKKSVNKVVVDKNAMQFIRTANNLARKGKTNKKLRGRNANPKAMKYNIA
Ga0265301_1000209041	3300028797	Rumen	MAKRKVSVSKVAVDKNMAQFMRTAGNLARKGKTNKKLHGKNANLKAIKYAIN
Ga0265301_1000399613	3300028797	Rumen	MAKRKSVVNKMVVDKNAAQFMRTAENLARKGKTNKKLHGRNANPKAAKYAK
Ga0265301_1000460014	3300028797	Rumen	MAKRRPVVNKIVVDKNAAQFARTAANLKRKGKTNKKLHGRNANPRAIKYAL
Ga0265301_1000800813	3300028797	Rumen	MAKRKNVVQKVVVDKNAAQFMRTAQNLAKKGKTNKKLRGRNANAKALKYNIVVA
Ga0265301_100188715	3300028797	Rumen	MAKRKVSVSKVAVDKNMAQFMRTAGNLARKGKTNKKLHGKNANLKAIKYAVI
Ga0265301_100245067	3300028797	Rumen	MAKRKVVNKISIDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAMKYNIA
Ga0265301_100299013	3300028797	Rumen	MAKRNSVVNKIVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAAKYAK
Ga0265301_100708371	3300028797	Rumen	MAKRRNVKKEVKVIDKNAAQFMRTAQNLLKKGKTNKKLNRNPRTMKYNIA
Ga0265301_100794904	3300028797	Rumen	MAKSKKVIKTLVDKNAAQFIRTANNLARKGKTNKKLKGRNANPKAMKYNIA
Ga0265301_101254153	3300028797	Rumen	MAKRNSVVNKIVVDKNAVQFMRTAANLARKGKTNKKLHGRNANPKAAKYAK
Ga0265301_101961132	3300028797	Rumen	MAKRRVQVQKVVVDKNAAQFMRTAQNLAKKGKTNKKLRGRNANAKALKYNIAVA
Ga0265301_103936681	3300028797	Rumen	MAQKRKVATPKVVVDKNAAQFMRTAQNLAKKGKTNKKLRGRNANPKALKYNIAVA
Ga0247608_1000338622	3300028805	Rumen	MAKRNSVVNKIVVDKNAAQFMRTAENLAKKGKTNKKLHGRNANPKAQKYAI
Ga0247608_1000702918	3300028805	Rumen	MAKRKSVVNKIVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAAKYAK
Ga0247608_100090444	3300028805	Rumen	MAKGKISVSKVAVDKNMAQFMRTAGNLARKGKTNKKLHGKNANLKAIKYAVI
Ga0247608_100244262	3300028805	Rumen	MAKRKVVNKITVDKNAAQFMRTAANLARKGKTNKKLRGRNANLKALKYAI
Ga0265298_1000183218	3300028832	Rumen	MAKRKPTVNKIVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAAKYAI
Ga0265298_100032755	3300028832	Rumen	MAKSKKVIKTLVDKNAAQFIRTANNLARKGKTNKKLRGRNANPKAMKYNIA
Ga0265298_1000539422	3300028832	Rumen	MAKRKAIVNKVVVDKNAAQFERTAANLKRKGKTNKKLHGRNANPKALKYAI
Ga0247610_101307625	3300028833	Rumen	KMKKRKITNKIVVDKNAAQFMRTAANLARKGKTNKKLKGRNANAKAIKYAI
Ga0247610_107339072	3300028833	Rumen	MAKRNSVVNKIVVDKNAAQFMRTAENLARKGKTNKKLHGRNANPKAAKYAK
Ga0256407_100031889	3300028886	Rumen	MAKRKGKVVNKVVVDKNAAQFMRTAQNLYKKGKTNKKLKGRNANPKAMKYNIA
Ga0256407_1001128113	3300028886	Rumen	MAKKKSVVNKIVVDKNAVQFMRTAENLARKGKTNKKLHGRNANPKAAKYAK
Ga0265299_100090684	3300028887	Rumen	MAKRKPVVNKVVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAAKYAI
Ga0265299_1001083614	3300028887	Rumen	MAKRRTNVNRVVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPRAAKYAI
Ga0265299_107044981	3300028887	Rumen	MAKRKSVVNKMVVDKNAAQFMRTAENLARKGKTNKKLHGRNANPKAAK
Ga0265299_117206072	3300028887	Rumen	KKVIKTLVDKNAAQFIRTANNLARKGKTNKKLRGRNANPKAMKYNIA
Ga0265300_100111562	3300028914	Rumen	MAKRKPVVQKIVVDKNAAQFMRTAQNLARKGKTNKKLKGRNANPKALKYNIAIA
Ga0265300_100134829	3300028914	Rumen	MAKRNNVKKEVKVIDKNAAQFMRTAQNLFKKGKTNKKLNRNPRAMKYNIA
Ga0265300_105657212	3300028914	Rumen	KVVSKVVVDKNAAQFMRTAANLSRKGKTNKKLHGRNANPRALKYDIA
Ga0169682_10318311	3300029057	Human Host-Associated	MAKRKNNNVAKVLVDKNAAQFARTAANLARKGKTNKKLGRNPKAKKYAIA
Ga0061013_100713334	3300030772	Fungi-Associated Bovine Rumen	MLXRVNEMAKRKVQVKKVVVDKNQAQFIRTAANLARKGKTNKKLHGRNANPRAAKYAI
Ga0061013_102345244	3300030772	Fungi-Associated Bovine Rumen	MAKNRGAKKPTVVVDKNAAQFIRTAANLARKGKTNKKLNGKNANLKARKYAHNI
Ga0061013_124737301	3300030772	Fungi-Associated Bovine Rumen	MSKRKVQVKKMVVDKNAAQFMRTAANLARKGKTNKKLRGRNANPKAIKYAI
Ga0061013_124888091	3300030772	Fungi-Associated Bovine Rumen	MAKRPMKTTKAIVDKNAAQFIRTAANLARKGKTNKKLHGRNAN
Ga0061013_128735222	3300030772	Fungi-Associated Bovine Rumen	MSKRKVQVKKMVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAIKYAI
Ga0061013_128819061	3300030772	Fungi-Associated Bovine Rumen	MAKRKNIKVAKVVVDKNAAQFMRTAANLARKGKTNKKLHGRNAN
Ga0061018_128873873	3300031085	Fungi-Associated Bovine Rumen	MAKNRGAKKPTVVVDKNAAQFIRTAANLARKGKTNKKL
Ga0061018_134335151	3300031085	Fungi-Associated Bovine Rumen	MLXRVNEMAKRKVQVKKVVVDKNQAQFIRTAANLARKGKTNKKLHGRNANPKAAKYAI
Ga0326513_100026401	3300031760	Rumen	MAKRKVSVKKVAVDKNQAQFMRTAANLARKGKTNKKLHGRNANPRAAKYAI
Ga0326513_100036049	3300031760	Rumen	MAKRKPVVNKVVVDKNAAQFMRTAENLARKGKTNKKLHGRNANPKAAKYAK
Ga0326513_100100171	3300031760	Rumen	MAKRKSVVNKIVVDKNAAQFMRTAQNLTRKGKTNKKLHGRNANPKAQKYAI
Ga0326513_100114901	3300031760	Rumen	VIVMSKRKVQVKKMVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAIKYAI
Ga0326513_100137302	3300031760	Rumen	MSKRVQVKKAVIDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAIKYAI
Ga0326513_101513321	3300031760	Rumen	RVITMAKRPVKVNKVVVDKNAAQFMRTAQNLAKKGKTNKKLRGRNANPKALKYNIAIA
Ga0326513_104613281	3300031760	Rumen	MAKRRNVVQKVVVDKNAAQFMRTAENLARKGKTNKKLNGRNANLKA
Ga0326513_111785361	3300031760	Rumen	MAKRKVNVVNKVVADKNAAQFMRTAANLARKGKTNKKLHGRNANPKAAKYAI
Ga0326511_100050764	3300031867	Rumen	MAKRKPVVNKIVVDKNAAQFMRTAQNLARKGKTNKKLHGRNANPKAIKYA
Ga0326511_102343742	3300031867	Rumen	MAKRRNVVQKVVVDKNAVQFMRTAQNLAKKGKTNKKLRGRNANAKALKYNIAVA
Ga0326511_108023451	3300031867	Rumen	MAKRKSVVNKVVVDKNAAQFMRTAENLARKGKTNKKLHGRNANPKAAKYAK
Ga0326511_118476082	3300031867	Rumen	MAKRPMKVVKTIVDKNAVQFTRTAQNLFNKGKTNKKLRGRNANPKAMKYDLGVMPI
Ga0310694_102789432	3300031992	Rumen	MKKRKITNKIVVDKNAAQFMRTAANLARKGKTNKKLRGRTANAKAIKYAI
Ga0310696_100473734	3300031993	Rumen	MAKRRPKAQKVVVDKNAAQFMRTAQNLAKKGKTNKKLRGRNANAKALKYNIAVA
Ga0310696_120959371	3300031993	Rumen	MAKRRKVVSKVVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPRALKYDIA
Ga0310696_121016662	3300031993	Rumen	MAKRKSVVNKVVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAAKYAK
Ga0310786_123983012	3300031998	Rumen	MAKTRKSVNKVVVDKNAMQFIRTANNLARKGKTNKKLRGRNANPKAMKYNIA
Ga0310695_1000847910	3300032007	Rumen	MKGVIIMAKRKGKVVNKVAVDKNAAQFMRTAQNLYKKGKTNKKLKGRNANPKAMKYNIA
Ga0310697_104485642	3300032030	Rumen	MAKRKVTVNKVAVDKNAAQFMRTAANLARKGKTNKKLHGRNANPKAAKYAI
Ga0326512_1000064423	3300032038	Rumen	MAKRKVSVKKVVVDKNAAQFMRTAANLIRKGKTNKKLHGKNANPRAIKYA
Ga0352980_10077931	3300032636	Fungi-Associated Bovine Rumen	MAKRKNIKVAKVVVDKNAAQFMRTAANLARKGKTNKKLHG
Ga0310690_100939568	3300033463	Rumen	MAKRKVSVSKVAVDKNMAQFMRTAGNLARKGKTNKKLH
Ga0310690_101038261	3300033463	Rumen	VSVSKVAVDKNMAQFMRTAGNLARKGKTNKKLHGKNANLKAIKYAVI
Ga0310690_104283562	3300033463	Rumen	MLWRVNEMSKRRKPVVNKVVVDKNAAQFMRTAANLARKGKTNKKLNGRNKNLKAAKYAM
Ga0310690_122543001	3300033463	Rumen	MANKKNRGKVQKVVVDKNAAQFMRTAQNLFKKGKTNKKLKGRNANPKALKYAIY