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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029057 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0127429 | Gp0193676 | Ga0169682 |
| Sample Name | Human fecal microbial communities from mother in Denmark - 383_M |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 150610821 |
| Sequencing Scaffolds | 17 |
| Novel Protein Genes | 17 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 1 |
| All Organisms → cellular organisms → Bacteria | 4 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp. | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctsf32 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Denmark | |||||||
| Coordinates | Lat. (o) | 55.678 | Long. (o) | 12.531 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013656 | Metagenome | 269 | Y |
| F042936 | Metagenome | 157 | N |
| F048702 | Metagenome / Metatranscriptome | 147 | Y |
| F055715 | Metagenome | 138 | N |
| F071325 | Metagenome | 122 | N |
| F072949 | Metagenome / Metatranscriptome | 120 | Y |
| F076190 | Metagenome | 118 | Y |
| F078693 | Metagenome | 116 | N |
| F087336 | Metagenome | 110 | N |
| F088914 | Metagenome | 109 | N |
| F088921 | Metagenome | 109 | N |
| F097172 | Metagenome / Metatranscriptome | 104 | Y |
| F099451 | Metagenome | 103 | N |
| F101355 | Metagenome | 102 | N |
| F105374 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0169682_100616 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides | 25686 | Open in IMG/M |
| Ga0169682_101268 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 14559 | Open in IMG/M |
| Ga0169682_101610 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 11979 | Open in IMG/M |
| Ga0169682_101669 | All Organisms → cellular organisms → Bacteria | 11651 | Open in IMG/M |
| Ga0169682_103146 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 6502 | Open in IMG/M |
| Ga0169682_103183 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 6441 | Open in IMG/M |
| Ga0169682_105046 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 4199 | Open in IMG/M |
| Ga0169682_105552 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3877 | Open in IMG/M |
| Ga0169682_105879 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 3676 | Open in IMG/M |
| Ga0169682_106422 | All Organisms → cellular organisms → Bacteria | 3398 | Open in IMG/M |
| Ga0169682_107562 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2943 | Open in IMG/M |
| Ga0169682_108045 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp. | 2785 | Open in IMG/M |
| Ga0169682_110060 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctsf32 | 2306 | Open in IMG/M |
| Ga0169682_111923 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2016 | Open in IMG/M |
| Ga0169682_115203 | All Organisms → cellular organisms → Bacteria | 1646 | Open in IMG/M |
| Ga0169682_116109 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74 | 1570 | Open in IMG/M |
| Ga0169682_119582 | All Organisms → cellular organisms → Bacteria | 1336 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0169682_100616 | Ga0169682_10061652 | F099451 | MDIKNVGQLRKVIENLSDDYTIEMRVRRTLSDEELRGCLYPYPYDTEYLTLEFDGIGVSDKVLCLGVTSKQQE |
| Ga0169682_101268 | Ga0169682_10126821 | F013656 | MSKIYKEPNKSETETTINVLYSENVFSIYTNKVNLQKQLNKLLGKPTKEYKIKRSIVGSSWEISLDDKIRISRLVLKANIFELYEKG |
| Ga0169682_101610 | Ga0169682_1016108 | F105374 | MKKRVALLVALCIWKVVAAQTPYGEMPELFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP |
| Ga0169682_101669 | Ga0169682_1016695 | F097172 | MKKNVLKKLMCAVLATACVATAVVPAMADDVITAEAATKKVTSVYKYHLEGYDKKGNDLFYSKTSFYNDLNSLPAIKTGKTTINVPAVTASVKSLSKEKDNPCYRSFLKFKAPKTGKYVITCTNLQGTDTQSVKILQNIYFDKVIKNGKKYGTESISVYTIGDYDTLYENNYLARLRTILDNYKAEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQIYVFVIDNRGMAKAVPPYFTTHGSNEQSCLWGGNYLKAYSFDMNIEYKK |
| Ga0169682_103146 | Ga0169682_1031465 | F097172 | MKKTMLKKLMCAVLTAACVATAVVPAMADDVVTAEAATKSVTSVYKYHLEGYDKNGYPVSGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGKPEYVTYVKFKAPKTGKYVVTLDNLQGTDDKTLRCMMYCDFYQISRTGKKYCLTSIEDSDTVGKYDTLYENNYLARLRTILNNYKAEHPEYTDVIEETYIDYTDYVNKRPVNKIKFTTKLKKGRTYVFSVDNIGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK |
| Ga0169682_103183 | Ga0169682_10318311 | F072949 | MAKRKNNNVAKVLVDKNAAQFARTAANLARKGKTNKKLGRNPKAKKYAIA |
| Ga0169682_105046 | Ga0169682_1050462 | F087336 | MVCFLTGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP |
| Ga0169682_105552 | Ga0169682_1055521 | F078693 | MVRAPVRGAKRFYIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVETEKS |
| Ga0169682_105879 | Ga0169682_1058796 | F101355 | MIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRRSYFFKSFVTEMSIFICMHKCLAQTGRLRSSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA |
| Ga0169682_106422 | Ga0169682_1064222 | F042936 | MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVHFRSRLRGK |
| Ga0169682_107562 | Ga0169682_1075621 | F071325 | FRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL |
| Ga0169682_108045 | Ga0169682_1080452 | F097172 | MKKNVFKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHIDGYNKNGYPASYSKASFYKDLNSLPAVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKSVKEGKKYKLEYLYPDTVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYEYQKDFVNKYPVAKDKFTTKLKKGQTYVFVIDNSLGKTTCKPYFTTHGYNEQSCLYNTNYLKAYSFDMNIEYKK |
| Ga0169682_110060 | Ga0169682_1100601 | F048702 | MDKRVNKKTKEELQQYLMWRRRGSVVLAKKGKGAKYNRQKIKVKNYTWE |
| Ga0169682_111923 | Ga0169682_1119233 | F088914 | VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDSLFSVPYTPKENRKNPGKFIAFSAWYAAKALEIGVK |
| Ga0169682_115203 | Ga0169682_1152031 | F055715 | LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKLCDKISELI |
| Ga0169682_116109 | Ga0169682_1161092 | F088921 | LGATIRLYKIGTGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKREKYINGEIYGEKNQIIVANKSAKIRDKMRSK |
| Ga0169682_119582 | Ga0169682_1195822 | F076190 | KNVFTAASRVSGRVWSLVRITVPNGLKYVKIGVEKPQNNSLYPYFQREPL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |