3300023051: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung F1

Overview

Basic Information

• IMG/M Taxon OID: 3300023051
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272182 | Ga0233379
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung F1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 125592333
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048702	Metagenome / Metatranscriptome	147	Y
F058575	Metagenome / Metatranscriptome	134	Y
F059515	Metagenome	133	Y
F059516	Metagenome	133	Y
F072921	Metagenome / Metatranscriptome	120	Y
F072949	Metagenome / Metatranscriptome	120	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233379_1017428	Not Available	971
Ga0233379_1017915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	958
Ga0233379_1033342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	702
Ga0233379_1064463	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233379_1007202	Ga0233379_10072021	F048702	VKIDKRIFKKEGEELQQYLHFRKRGGSVKPKKGKGSFDRKKFKKDIDN
Ga0233379_1017428	Ga0233379_10174282	F072949	MAKRKVQTAKVVVDKNAAQFARTAANLARKGKTNKKLGRNPKAKKYAI
Ga0233379_1017915	Ga0233379_10179152	F072921	MKSRLILTTDRKSASEGEYIEIRWACDACPDSLYLAIDSGCTQYSIAVSDSGTTRIPVPKSNGKMTVKLIGVISGKKVTESIDVRVKSTKKAGTKAPLSSRMKMFGEKMQAKWYVFRANMKYWWLSQKKWQKALWIALLVLWLGLLFSSIGRKPEVKVSSDKIQTAYIFS
Ga0233379_1033342	Ga0233379_10333421	F059515	QAIKIVGTLEVAESEDKPFTDMYGYEFNYKIVDATYTIIQADELSEDMALWQKIAETDVVSDIYRMYDYVNFLCAWNTYYVNSGTDENGNIVPGYYLYPTDAVYLITTDGAQYNYGYKDGYFDSIISKIEAVDPNAFADLVANVRSAEVLAQKALAELENEHYTSEKKYLEQFGTEDLVYTLTIGEELTAEMQMLYPAFANWLGSWEM
Ga0233379_1058583	Ga0233379_10585831	F058575	ILGTRLMNAAEYFEQGQELRRNRKFGEAINAFRAAAAAPDCTEDIKRRSLASVELIQEINGFVNTDLMNP
Ga0233379_1064463	Ga0233379_10644632	F059516	MRVDLLLKALPIMGYGYLGIFIVTIVIILVVSLLNKLTNKKDSK