3300023026: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C2

Overview

Basic Information

• IMG/M Taxon OID: 3300023026
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272167 | Ga0233364
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 66299665
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051611	Metagenome	143	Y
F072921	Metagenome / Metatranscriptome	120	Y
F072949	Metagenome / Metatranscriptome	120	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233364_1004225	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1512
Ga0233364_1004895	Not Available	1399
Ga0233364_1006429	Not Available	1205
Ga0233364_1007419	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1110
Ga0233364_1009565	Not Available	965
Ga0233364_1022954	Not Available	597

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233364_1004225	Ga0233364_10042252	F072921	MKKQMTLSTDRKSASEGEYLDIRWECNACPDSLYLSVDSGYQQYSIAVADNGSTRLAMGRSKGKTTISLIGVISGKKVTESVEIRIRNRKESRKTKAPLSVRMKAFGEKMQAKWYVFRAQCKYWWLSQKKWQKALWIALLVLWLGMLIASFGNKPEPKASSDQVQTAYLMR
Ga0233364_1004895	Ga0233364_10048952	F072921	MKKKMKLSTDRKSASEGEYIEIRWACDACPDSLYLSIDSERTQYSIAVSDSGTTRIPVPKSNGKMTVKLIGVISGKKVIESVDVRVKSNKRARSKAPLSSRMKMFGEKMKAKWYVFRANIKYWWLSQKKWQKALWIALLALWLGMLVSSIGRKPEVTISTDQVQTAYLVR
Ga0233364_1006429	Ga0233364_10064292	F051611	MVKDKVTKEDLMKFNVGDQKVFTLPNYGKARSAQSYANQLKKATMGTENPMEFKAVVGDPIPGSGQ
Ga0233364_1007419	Ga0233364_10074193	F072921	QQLHMQMKKILSLTTDRKSASEGEFIEIRWNCDACPDSLLLTIDSGYKCDTIAVADSGSTRIMMSRSKGKTVVSLKAVISGKKVTESVDIRIKNSKNTTSGTTPGISKTKIWKEKIVAKWYVFRAQMKYWWLSQKKWQKALWITLLALWLGMMIASFANDPKPEISSGQIQTAACRPSFDNQHTQAYFPEVVRVTRAAP
Ga0233364_1009565	Ga0233364_10095652	F072949	MAKRPMKTTKAVVDKNATQFIRTAANLARKGKTNKKLHGRNANPKAIKYA
Ga0233364_1022954	Ga0233364_10229543	F072949	MAKRKMQMTKVVVDKNAAQFERTAANLARKGKTNKKLGRNPKAKKYAK