3300012991: Pig viral communities from oral cavity of healthy adult pig - Individual 0

Overview

Basic Information

• IMG/M Taxon OID: 3300012991
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0126266 | Gp0177336 | Ga0157148
• Sample Name: Pig viral communities from oral cavity of healthy adult pig - Individual 0
• Sequencing Status: Permanent Draft
• Sequencing Center: Autonomous University of Barcelona
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 180262498
• Sequencing Scaffolds: 18
• Novel Protein Genes: 19
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. tf2-5	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
Not Available	10
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctsUY14	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctjsp22	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Pig Viral Communities From Oral Cavities And Ears Of Healthy Adults Pigs From Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Oral Cavity → Unclassified → Pig Oral Cavity → Pig Viral Communities From Oral Cavities And Ears Of Healthy Adults Pigs From Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 56.0
  • Long. (^o): 10.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036964	Metagenome / Metatranscriptome	169	Y
F042737	Metagenome / Metatranscriptome	157	Y
F048702	Metagenome / Metatranscriptome	147	Y
F051611	Metagenome	143	Y
F053097	Metagenome / Metatranscriptome	141	Y
F057003	Metagenome / Metatranscriptome	137	Y
F066313	Metagenome	126	Y
F072949	Metagenome / Metatranscriptome	120	Y
F082887	Metagenome / Metatranscriptome	113	Y
F093056	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0157148_1000038	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. tf2-5	15105
Ga0157148_1000387	All Organisms → cellular organisms → Bacteria	5247
Ga0157148_1001172	All Organisms → Viruses → Predicted Viral	3344
Ga0157148_1001439	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	3070
Ga0157148_1002442	Not Available	2435
Ga0157148_1011678	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1292
Ga0157148_1019111	Not Available	1066
Ga0157148_1025677	All Organisms → cellular organisms → Bacteria → Terrabacteria group	951
Ga0157148_1031852	Not Available	876
Ga0157148_1032030	Not Available	874
Ga0157148_1045853	Not Available	758
Ga0157148_1045966	Not Available	757
Ga0157148_1047161	Not Available	750
Ga0157148_1060123	Not Available	682
Ga0157148_1060857	Not Available	679
Ga0157148_1065267	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctsUY14	661
Ga0157148_1070622	Not Available	641
Ga0157148_1090675	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctjsp22	581

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0157148_1000038	Ga0157148_10000388	F066313	MSKKFNEWMSRKNNWFSAIGGETFTNAEVVYTHLGLIVFLIILGLVGNLE*
Ga0157148_1000387	Ga0157148_10003877	F057003	MANFIDVSSLTYSGKEAQEIFAKDIYDIDLRNYGVTYMDGVKGKTKIYSGDMGEAWQEYTCPFSPKGKVSLAESYIEPKAIKVNQENCYDTFWNTFLVDQTSISLAGGIPQTFADWYFDRLRKQMAKEYQEIAWQGDTAHTATTKTYLKVVDGWEKQLKAKAQKIDVTAFTVDNIVSQVEALIMKGLEKASAEDVPTDGYKVFMNYSDVKVLEVALGKLTVGNSANNIFGNYSKNADGTINVYGFQIVPTMMSRNKAVFGPARNLVLGYDTFDSHIQYKLIDMRETTLDNTFRVAAISNIAVGVVLPELFTILG*
Ga0157148_1001172	Ga0157148_10011721	F053097	NIMFDIQGSKIQLKTEDLAIPPFKDFYNKSKDKQDAIKKIEFIIWRYKWNTPYEAYPEKERTWRVAKDVFNDENYVPDADVQELAKRFNEF*
Ga0157148_1001439	Ga0157148_10014395	F053097	MFDIQGDKIKLSTEDLAIPPFKDHINAAKDTSTALKEIEYVIWLHKWNTPYEAYPIEERPRVVAKDVFNDEHYIPSEAVKNLEKRFVEF*
Ga0157148_1002442	Ga0157148_10024424	F036964	MKRRLKMISFLKIAFPALMVTGALGSLVVNIISKGDKATSLQWIGASLLYTALLFRNK*
Ga0157148_1011678	Ga0157148_10116781	F057003	MANFIDVSSLTYSGKEAQEIFAKDVYDIDLRNYGVTYMDGVKGKTKIYSGDMGEAWQEYTCPFSPKGKVSLAESFIEPKAIKVNQENCYDTFWNTFLVDQTSISLAGGIPQTFADWYFDRLRKQMAKEYQEIAWQGDTARTATTKNYLKVVDGWEKQLKAKAQKVTGETFTVDNIIGQVEALIMKGLEKANAEDVPTDGYKVFMNYGDVKVLEVALGKLSVGNSANQIFGNYSKNADGTINVYGFQVVPTMMSKNKAIFGPAMNLVLGYDTFDSHIEYKLIDMRETTLDNTFRVAAISNIAVGVVLPELFTILG*
Ga0157148_1019111	Ga0157148_10191112	F082887	MKKIKTIAKYTTNILGIIGAIITGINQVEGISIPYAVQIVGVISVVQGVIGVYLLKTKQQKRRFNYE*
Ga0157148_1025677	Ga0157148_10256772	F082887	VKKIKKIAKYATNILAIVSALIAGINGVEGITIPYAIQIVQVIAVVQGVIGTYLLGEKAVRTINKGE*
Ga0157148_1031852	Ga0157148_10318522	F042737	VKNAGGKVSIPELCEALNRAPRSVGANVTDLTKKGLAERQKEKDGEEEVTYVALVPGWEAAFDALEDK*
Ga0157148_1032030	Ga0157148_10320301	F042737	TEKSQTIFEYLKANGGRVSIEELANATGRSARSVGANVLDLQKKKLVVREKEEVEGADKPVAYAVLTDEGRNFVPSDDEE*
Ga0157148_1045853	Ga0157148_10458531	F042737	MEVFNYVKENGGRVSINELVEATGRAARSINANVTDLCKKALAVREKEAGEGEDAKEITYVVLTDEGKEFVPSED*
Ga0157148_1045966	Ga0157148_10459662	F051611	MIKDKVTKEDLLKFNVGDQKVFTLPTYGKARSAQSYANQMKKATMGTERPMEFKAVVGDPIPGNGQCSVTITRIS*
Ga0157148_1047161	Ga0157148_10471611	F093056	MKKRYQYWSKDGLVWTKWFDWNSDYMPELQKDDRRTFCRLKNEYSEV*
Ga0157148_1052712	Ga0157148_10527122	F053097	MFDIQGTKIKLSTDDLAIPPFKDYYNNAKDKTRALKDIEYVIWLYKWNSPYDAYPEKQRASVLGKDLYGDE*
Ga0157148_1060123	Ga0157148_10601231	F072949	MTKRKVVNKVVVDKNAAQFMRTAQNLARKGKTNKKLHGRNANPKAQKYAI*
Ga0157148_1060857	Ga0157148_10608572	F042737	MKLTEKSQSVFDYVKNAGGHVSIDEICNAIGRPSRSVGANVTDLQKKGLVEREKVEVEGAEKPVVYVNLTDAGATFVPSDDAE*
Ga0157148_1065267	Ga0157148_10652672	F036964	KRRLKMISFLKIVFPALMVTGAAGSLIVNICTKGDWPVSLQWFGAALLYTALLFRNK*
Ga0157148_1070622	Ga0157148_10706222	F048702	MEKFDKRMLKMNPEELQQYLAFKRKGSKVPSKKGKGSYDRKSFKKGVA*
Ga0157148_1090675	Ga0157148_10906753	F036964	MMIEKMLRILFPLLMVVGAIGSFIVEIARKGDWATALQWIGACLLYTALLFEI*