NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009869

3300009869: Cow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Corn Stover. Combined Assembly of Gp0148673, Gp0148674



Overview

Basic Information
IMG/M Taxon OID3300009869 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0120393 | Gp0148673 | Ga0130078
Sample NameCow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Corn Stover. Combined Assembly of Gp0148673, Gp0148674
Sequencing StatusPermanent Draft
Sequencing CenterU.S. Department of Energy (DOE)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size1736297801
Sequencing Scaffolds819
Novel Protein Genes885
Associated Families260

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available701
All Organisms → cellular organisms → Eukaryota → Eukaryota incertae sedis → Palpitomonas → Palpitomonas bilix15
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Archamoebae → Mastigamoebida → Entamoebidae → Entamoeba12
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum7
All Organisms → cellular organisms → Eukaryota31
All Organisms → cellular organisms → Eukaryota → Apusozoa → Apusomonadidae → Thecamonas → Thecamonas trahens1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.10
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Metschnikowiaceae → Clavispora → Clavispora lusitaniae → Clavispora lusitaniae ATCC 427201
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum1
All Organisms → Viruses → Predicted Viral5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Litostomatea → Trichostomatia → Entodiniomorphida → Ophryoscolecidae → Entodinium → Entodinium caudatum2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Mucoromycotina → Endogonomycetes → Endogonales → Endogonaceae → Jimgerdemannia → Jimgerdemannia flammicorona2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae → Chlamydomonas → Chlamydomonas reinhardtii1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Piroplasmida → Theileriidae → Theileria → Theileria annulata4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.7
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Archamoebae → Mastigamoebida → Mastigamoebidae → Mastigamoeba → Mastigamoeba balamuthi3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae1
All Organisms → cellular organisms → Eukaryota → Amoebozoa2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera subtropica1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctnPP241
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Saprolegniales → Saprolegniaceae → Saprolegnia → Saprolegnia parasitica1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Conoidasida → Coccidia → Eucoccidiorida → Eimeriorina → Cryptosporidiidae → Cryptosporidium → Cryptosporidium parvum1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCow Rumen Metatranscriptome
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Cow Rumen Metatranscriptome

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUniversity of Illinois at Urbana - Champaign, Illinois, USA
CoordinatesLat. (o)40.096Long. (o)-88.2315Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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