3300032636: Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-2 switchgrass (Eukaryote Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300032636
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085735 | Gp0095240 | Ga0352980
• Sample Name: Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-2 switchgrass (Eukaryote Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64052562
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	2
Not Available	8
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Zizaniinae → Zizania → Zizania palustris	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Litostomatea → Trichostomatia → Entodiniomorphida → Ophryoscolecidae → Entodinium → Entodinium caudatum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Illinois
• Coordinates
  • Lat. (^o): 40.102108
  • Long. (^o): -88.227299
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004661	Metagenome / Metatranscriptome	428	Y
F006970	Metagenome / Metatranscriptome	361	Y
F008062	Metagenome / Metatranscriptome	340	Y
F017083	Metagenome / Metatranscriptome	242	Y
F019573	Metagenome / Metatranscriptome	229	Y
F030337	Metagenome / Metatranscriptome	185	N
F030954	Metagenome / Metatranscriptome	183	Y
F037523	Metagenome / Metatranscriptome	167	N
F072949	Metagenome / Metatranscriptome	120	Y
F094710	Metagenome / Metatranscriptome	105	N
F096417	Metagenome / Metatranscriptome	104	N
F098413	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0352980_1004798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	994
Ga0352980_1007793	Not Available	671
Ga0352980_1011858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	514
Ga0352980_1026432	Not Available	890
Ga0352980_1030503	Not Available	684
Ga0352980_1031159	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Zizaniinae → Zizania → Zizania palustris	951
Ga0352980_1031160	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Zizaniinae → Zizania → Zizania palustris	870
Ga0352980_1035197	Not Available	611
Ga0352980_1038104	Not Available	510
Ga0352980_1042777	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Litostomatea → Trichostomatia → Entodiniomorphida → Ophryoscolecidae → Entodinium → Entodinium caudatum	589
Ga0352980_1044952	Not Available	700
Ga0352980_1065484	Not Available	538
Ga0352980_1103661	Not Available	522

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0352980_1004798	Ga0352980_10047981	F037523	LLLSKRETSNKEDSLEVIPKQKRMVFRGKTTKRLKVPEDRNVLKMILPSLVRFLDDKFLEHKQWAMDSLLNKWRAEKFAKLYKIFSNKTINPPKRDLVDLMKAEYLYMNGLGASNCDLFKLLRRYWIRMVCSNMYGPSRVYKTLYLIKMIMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKGDKNASVVKEFERLATRMGIFTNEDYNNPNEENFCEKINKKYVFQPMQVLLEREGPSQFFCSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRIEKRY
Ga0352980_1007793	Ga0352980_10077931	F072949	MAKRKNIKVAKVVVDKNAAQFMRTAANLARKGKTNKKLHG
Ga0352980_1008508	Ga0352980_10085081	F098413	QGDMSSLGPNIFPAQPGQLPPEAYQSQTPTVRTLPPKIVKNTLPPQYKTNTLPPKVVTTRLQPIFPPGTAPQAF
Ga0352980_1011858	Ga0352980_10118581	F030337	ELVRKWRFSAFIQSISRKKLELMYKNLHVSYLQMANELFGEKSTKNASVVKEFERLVTKMGIFTNEDYNSVNEENFCEKITKKYVFQPMPLLLEKEGPTQFFASGIEIEDSGENNEDYYVDQELGGETIGKYKQETNKSSSKADKNSSRLSKY
Ga0352980_1026432	Ga0352980_10264321	F004661	AIEILGMEKEAPQIQPINQLFIAAVPRPENIVQKTGEVVLEAKPRPENIVQKSSEVVLEAKPRPENIVQNTSEIVLDAKERPENVLEQRDAIEILGMEKEPLQLQAINQLIIYAVPRPENIVQKTSEVVLEAKERPQNIVQNIHEIVLEAKERPENVFEQRDAIEILGMEKEPLQLQPINQLIIEAVPRPENEPQKTSEVLLEAKLRPENLVQRSGELEIAAQERPENVLEQRDAIEILGMEKEPLQLQAINQLIIYAVPRPENIVQKTSEVVLEAKERPQNIVQNINEIVLEAKE
Ga0352980_1030503	Ga0352980_10305031	F008062	FFVVLLLALGFVSSKRLRDIPVDQIYDGVVHLFKGLAETEEAKCAAVLTNNKAQILEIINAAIAEVKAGTPIETAVQNAALKLMGIDGLVSECNVLAMPAIITKFTTKEGLVEIFQTLIDNIDEVYSYGEKIKEGIQNKDYNAAAEALGHILAIALDFHVNL
Ga0352980_1031159	Ga0352980_10311591	F017083	MKLYLKVIGCSCYTCLPRTAPAAAQSARKTAAPGTGTGAPQMDQRLLTNTWPKQCTIISI
Ga0352980_1031160	Ga0352980_10311601	F017083	MKLYLKVIGCSCYTCLPRTAPAAAQSARKTAAPGTGTGAPQMDQRLLTNTWPKQ
Ga0352980_1035197	Ga0352980_10351971	F094710	FSINIGDEVLCRITSVKSKFIYTLINNKLIGRMDIENYQGNVEKIQKLIKETVGIRKMSVESRGSTNSDVTNNYPKELLIKAEVIDIIKLQNKLNDSELGIKKKKIKKLKIYKIVPQIDFNSIDIDSDENIKINSGLTNEPVSSNLDITGKEPNIGIISSIKPLNKYPILLKIKANLEEKLQIPFNEIPLNMLSDDGEIKYKL
Ga0352980_1038104	Ga0352980_10381041	F030954	SQYGQSFPQAGQPTYKEIARGVGIDPRELEAIKRVAFQVYQSGVRPMAKDISEGIKQQLGGEWFAFVNPAGDETYEFSLTRVKGTDFVSFVLNEDTKFQVCRIKAY
Ga0352980_1042777	Ga0352980_10427771	F019573	QDFGTQSVGGAEPLNLGPNIFPAQPGQLPPEAYQSQTPTVRTLPPKIVKNTLPPQYKTNTLPPKVVTTRLQPIFPPGSAPSALPQF
Ga0352980_1044952	Ga0352980_10449521	F096417	AIDLFLQNKGNEALCSAIEKFYEYRKFILNCFKMIKEICFSSEENKKKLKECGIEDKIKIAMEKCKPEDKIIKFEGKIAINNITYDKEKEKNKPYTPPNYQEIKSAKLIKSTLYDYITSGITVKGLNPKGKAKEFVLSFSPDLMKIYFHKPKTPLIPPKIKYTLETPITKIVKGHGTDLFKKAGGVFSKPPDKALCFSIIQDKLENEKKERSLNVICSNDKECEKIFGAIELG
Ga0352980_1065484	Ga0352980_10654841	F008062	FFVLLLALTAVSSFKLKEVPVDDIYAAVVALFKGMAETEEATCSQVLVNQKPKILEIVYAAIDEVKAGTAIETAIQNAAIKLMGVDGLVSECNVLAMPAIINKFSTEEGLIEIFQTLIDNIHEVYTYGEQIRDGIKNKDYNAAAEAAGHILSIALDFKVNL
Ga0352980_1103661	Ga0352980_11036611	F006970	MKKQVESDNPLLNKKIVKTTLKTHAYSTPWDQPQYKEQIVSNQKYSKIENVFDIPYLKHPPAYKQGDFFTRFNICVQKKKDLKKTLDDITKRYNDLMTFFNKELDKTFAGSPTQDQKNKMVEYFIKLLELYHESREIEHYDDIFSKEVEKNK