NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300034414

3300034414: Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A4.3



Overview

Basic Information
IMG/M Taxon OID3300034414 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0142001 | Gp0401919 | Ga0373905
Sample NameUranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A4.3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size264342347
Sequencing Scaffolds32
Novel Protein Genes39
Associated Families37

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1
Not Available18
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium1
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RBG_13_43_81
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameUranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States
TypeEngineered
TaxonomyEngineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Oak Ridge, Tennessee
CoordinatesLat. (o)36.0103Long. (o)-84.2696Alt. (m)N/ADepth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002839Metagenome / Metatranscriptome527Y
F007586Metagenome / Metatranscriptome348Y
F008952Metagenome / Metatranscriptome325Y
F009540Metagenome / Metatranscriptome316Y
F017497Metagenome / Metatranscriptome240Y
F018517Metagenome / Metatranscriptome234Y
F020376Metagenome224Y
F020556Metagenome223Y
F020727Metagenome / Metatranscriptome222Y
F021446Metagenome / Metatranscriptome219Y
F024002Metagenome / Metatranscriptome208Y
F026359Metagenome / Metatranscriptome198Y
F029499Metagenome / Metatranscriptome188Y
F030577Metagenome / Metatranscriptome185Y
F034985Metagenome / Metatranscriptome173Y
F037436Metagenome / Metatranscriptome168Y
F038704Metagenome165Y
F038894Metagenome / Metatranscriptome165Y
F040696Metagenome161Y
F045952Metagenome152Y
F055835Metagenome138Y
F056130Metagenome / Metatranscriptome138Y
F067141Metagenome / Metatranscriptome126Y
F067888Metagenome125Y
F068393Metagenome124N
F077454Metagenome117Y
F084411Metagenome112Y
F085007Metagenome / Metatranscriptome111Y
F088154Metagenome109Y
F088270Metagenome109N
F092301Metagenome / Metatranscriptome107Y
F093160Metagenome / Metatranscriptome106Y
F094833Metagenome105N
F098464Metagenome103Y
F098764Metagenome103N
F103216Metagenome / Metatranscriptome101N
F104362Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0373905_003702All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1867Open in IMG/M
Ga0373905_009065All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1273Open in IMG/M
Ga0373905_012838Not Available1100Open in IMG/M
Ga0373905_022733All Organisms → cellular organisms → Archaea870Open in IMG/M
Ga0373905_024652Not Available843Open in IMG/M
Ga0373905_027925All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium802Open in IMG/M
Ga0373905_031684All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon763Open in IMG/M
Ga0373905_032895Not Available751Open in IMG/M
Ga0373905_036327All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium723Open in IMG/M
Ga0373905_040595Not Available691Open in IMG/M
Ga0373905_041093All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RBG_13_43_8688Open in IMG/M
Ga0373905_041711All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium684Open in IMG/M
Ga0373905_046171All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes658Open in IMG/M
Ga0373905_049017Not Available643Open in IMG/M
Ga0373905_050026Not Available638Open in IMG/M
Ga0373905_050093All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium638Open in IMG/M
Ga0373905_055728All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium612Open in IMG/M
Ga0373905_061573Not Available589Open in IMG/M
Ga0373905_065936Not Available574Open in IMG/M
Ga0373905_068517All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium566Open in IMG/M
Ga0373905_072692All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia553Open in IMG/M
Ga0373905_073864Not Available550Open in IMG/M
Ga0373905_074999Not Available547Open in IMG/M
Ga0373905_075311Not Available546Open in IMG/M
Ga0373905_079387Not Available535Open in IMG/M
Ga0373905_082924Not Available527Open in IMG/M
Ga0373905_083893Not Available524Open in IMG/M
Ga0373905_086805Not Available518Open in IMG/M
Ga0373905_087098Not Available517Open in IMG/M
Ga0373905_088243Not Available515Open in IMG/M
Ga0373905_090640All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria510Open in IMG/M
Ga0373905_094221Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0373905_003702Ga0373905_003702_188_589F020376MDGKRGTVHDRWVQRTEAAYRRMFEGKSQEELVTLTQRESMAVLIGKELAEFLLEEHVALDPAAQPTEASATRCPKCGQPGARAVQEDEGLSERRVTTRAGDLRVRRERWHCAKCRIVFFSAGRSAGSGDGRL
Ga0373905_009065Ga0373905_009065_1_183F094833MKLLTKEEKILNDGLEKVSEKKDNMDWISSLAFLNSIGCSPFWAKVKLALSLAYYRITAF
Ga0373905_012838Ga0373905_012838_244_648F021446MKTLSIALMAAFMLVLAATSTGQAQSAEDIYNDPSPGGKYVYRGCNLAQVIFIRGDKLSEINELTLIIEVQGSPPLRLTFPILAKRQEGNKLILDYQWPPAGDTYEATIIGGSLINRKTKGYLAGIREELFTRE
Ga0373905_022733Ga0373905_022733_154_870F056130VRRLKTLPFLGHRGAVSYTVSAIIMTATTVALVLVAFFYAYQVLDKQRGMSEFEVAKKSILAFDDALENVAWKPGATRSTRFTADYGYVQLLPNANSMSISAIVDGQLKPLSNGTYPGSTAVIKYWLSTNFVSFEPNYESYILGNSSSVISSSIDPYGRSAIRQQAGWVTISLDYRVRTMRTAVIKVNGVDTNYVDIWVIRVSTVVSTAWSYVHDFDLLARTMSVRTASYGPYNVSTQS
Ga0373905_024652Ga0373905_024652_98_547F068393MPPEELRKMKIEIEKEKPKAIENALKAFDSCPDWLWCPSSATAYREDPIDDSGVSEEGAIWKVLQGYSRPLEEIFTRYGLSVGLPMVPDATITDYPLKVPYRFLEDHALKELNIAVGEAHEGFCRAKRDVEVLERELKETEALEKFESA
Ga0373905_027925Ga0373905_027925_47_403F024002MTAMVALIPMAAKGSGSAYLDGAHDPQMIAGQPMGFSISRAVLTENIRNLKAARWSHPLCGLRNRFGCSIEGTDDLGQVQPTDMQIDGGRGGRSVAKKHLDMMEARSRFNQVSGETVP
Ga0373905_031684Ga0373905_031684_1_693F098464MPSHHVQRRVALVLILFLVSQATDLSFAVSALDSVSRAADINAPQWREASPTRVIISSTADWGRILFDDLNGTNSNGLRIKTVIDSGWLEGRDSDDQLYAGRKFAWPDTEYDKIVVRKGDMVAFFKGLNDFHYTEVYADLILEVNIDLPRVNIWLMTGGNGTTSFEIVSQDTGGTMWRDIIVANGETQQVKRVMTPQPFFRPGRTESSVVVTWLSIVILFMILLNFPILET
Ga0373905_032895Ga0373905_032895_68_751F017497VRQASPAALRLSVWAYAHLLRAYPASFRAEFGGEMALLFSDCCRDEWRSAGPAGVCRLLARAALDTLVSAPPLWAERLEETMKGHSADRRWGFWLADHGLAMGGLALLAVGAATSWWAMSLGWAALAIAFFAWVAEADGLLALPRLGRVAIRTGGLEPPLAFKVRRGERVLFFFCEEDLERGGWSDVYTVLDRPKGTDGFEPCYSLPPAAIPSGWSLRGRVPVDDLRF
Ga0373905_036327Ga0373905_036327_388_627F026359MVMRLEELPKMYGPETLSLMDRALEQAWRELKRRGNVVDANAARSRLTTTIVALASVGETDSAKLKRFALNASSGASGL
Ga0373905_040595Ga0373905_040595_192_392F084411MRRWSAFLAVAALLAAGCGGGGTSSPTSPATPSGDPSKLVVLDSGNFDTLVLAAPRPSLVKFQSPT
Ga0373905_041093Ga0373905_041093_494_667F088270MIPLTLALSLRGRGDYRWFLPLEGRLRRLAEERGGLGEGEMSYYFETVNKCITRNRT
Ga0373905_041711Ga0373905_041711_51_683F018517MKILLVLAVVLSVLSVPQITLAQSTPPTEMAVRVTEARKANAALMRQYSWTSRTEVIDQGQVKDVRIDAVNYGPGGQLQRSTLNDQSAPLPLGFLRRRIAEHERQKVETYLTGLRDLFEQYTLPTAGKVQDFLNKATASGPDASGLFEMTGRNVVLLGDTFSLWLNPRTRHPQRIQVATTFQGDPVNLTATFNTPPSGLNYVAYAEVTVPA
Ga0373905_043093Ga0373905_043093_3_578F104362MLAWIGLQSGDVDGTIRELSHPLLAPSFSCGDLSPFEQAVLSLSLRAWEGLPPERLDAYPPVKAGMCGGKVLLTALWEAEEMRGEVSRATKVSDVAARRFPSDEGAAALEMKMVGALLRAGQDREALARALTLPERYGPGSMWAQTQPSPVRVNAVAEMAGMLKNLFERKFDEGIRSGERSAMSSAAVLMGE
Ga0373905_046171Ga0373905_046171_421_657F038894AANYLLGLATLLQVPQVDPQAEKQKSCDLAKQEATLLDEAEKALTAGQSANPEVAARNLGIIAKYKPRAASMIKAYCK
Ga0373905_049017Ga0373905_049017_238_633F040696MDLSKNTSDFFTAENGRKSSFGLGTKDTEDVPVTLEDVFEEEADAAIADAHGVGGPVIDVLAVEEIVLEFLLSDQIGGFAVELGEHADGAGVGLLSPFPFAIELKSLDRFVIPLCLHDTSPFSVRIDFPFQ
Ga0373905_050026Ga0373905_050026_49_606F085007LSTTRNAWNWLVLIVFVGIVAVMDYVLLNYLMSHGLEAKSYPIQLGNNQLSIPLLSLTFAGVIIVAIAAWRYMSSTMSISALKEMSELETIRMLRAAGVAIFFFSVVLFGPYIVGASGFWTQMSSIGRAVPQLAGPIQGLLSSIQPAMSLDTLTKLAVSQNTAAAALVAVSGLIGYLQRRIRRPR
Ga0373905_050093Ga0373905_050093_1_342F007586MRRTSEKGEGKLGGLIFLVVVLVGALAAWNVAPAYFDHYDFVDKVNEICRMPKYRFRGSGDDGVLKLLMEEVTKRKLQQWIGRESFTVNTTDYNRTIDLYYEREVEILPGWKKT
Ga0373905_051424Ga0373905_051424_209_631F034985VATRPEAAGRWRVGDGEEARLTPGAAAAAEVWSRGFLPLRVRSEGSFRLRPAFPGTAVTLGEDLYEVMSETELPEDGLVVYRLRAWPEGEVVRDRVVYGPAFVRAAEAERERARVRARARPWRFLLYPLVGLLPEEAQEQL
Ga0373905_053534Ga0373905_053534_62_481F098764MYGDGEPELLNWQVLKGTLRGIGLLHYFAGTSPEGVRLEYIAVIDLWAKKLIAIEPARWGELQAQWAWSDSGVVVVDPQGVPSRVEVRDGAQTRVATYERPAHLKRIKRVSRPILPRFSYRPARRMMPFRYGFNPYAFR
Ga0373905_055728Ga0373905_055728_226_612F092301MSTKKRLITRMALWTGTVLVVALLAAGAALALLHSHRLNWEAEQKAERQQVVERSRTYLGELAKRIDKLPVDPTLVGEIESRYFEERASGPLSVWAMGTSGQFLFGVPKETFSRLNAVYDREITPRLTE
Ga0373905_057538Ga0373905_057538_2_604F020556HIVVPTAPRPAPPAGDRGVRRVEIGPPDPGFGFGRFTRVELRGRSFVVLTEAVTEPRFTVTTVVTERGVPLRKVESAFPHPLAREDDRDTIRRQLDLQHDDTLQRLDELLLDPSPRRVVWSDQSRSVEAGVLAWAISVVAQLAETQAGTDETARQLRLTHEKALVEDDALRAFQITPFGRVVVDPQHAGRVARRAVRAVAG
Ga0373905_060685Ga0373905_060685_1_261F030577RFEEAARAYPSEAAEWLVLTGSFYQRFLDHPDQRPERARFFRDVLEGRGGFEVAARFRQEGWRRPGADEFLDPTIVVLRRSPATSR
Ga0373905_061573Ga0373905_061573_147_425F103216MAVMSRNKNHKAAFDWAEGETPLGEECFWARFDYLKLRETLEAIVSAMETTAKEDSPASEAEPASTLRLVVSNDRPEGEENPSADGPEPLPA
Ga0373905_064736Ga0373905_064736_228_578F067888KGELLVLARKLKASPGDFVGQQIKLHCRFGGFENKFLNDKNGPKFLSTYYIGLIAQSGKEMNEPLFDHLFISKKEAKEQGVYHLGVNDLITVYGIVNSAYNKEPWIEVYVVKKGWE
Ga0373905_065936Ga0373905_065936_2_574F040696CSIAATAKSRKEEAGVTVGEPIAAEEVEGGWGERDVSVLGALSTMDMDHHAGGVDIGDFEVETFVESEAAGIDGGEIGVILKGMDLGKNGSDFFTAENGREASFGLGTEDTEDVPVTLEDVFEEEANAAIADAHGIGGPVIEVLAVEEIILEFLFGDQIGGFGVELGEHADGAGVGLLSPFPLAVELKSLD
Ga0373905_066835Ga0373905_066835_251_571F038704MPADPLEVDWEGMVVAFESRSRRITHFFDRSTGDVVQVLEKDAARHSTMGADPRYAALPRDSGERSRGDLEDFAASCEDAGCRRDLSAALASEDFASAYRDALMRHP
Ga0373905_068517Ga0373905_068517_2_127F045952MPTAAKLMMSDEPPALMNGSVIPVTGRSETTTPMLMNAWRLI
Ga0373905_072692Ga0373905_072692_38_238F067141VVDGLAVLASSCMLADATAAGVQAILSKRDGFRLALDYVKNVPGVHGGLVVLGDRIGLTGNVEIAA
Ga0373905_073864Ga0373905_073864_235_519F020727MEKSMMKYQVLIKMTPGNGGEFWDAFKKMPTEPMKGVMIESSWSLFGYWDFVVFFKADSNENSLHFIGEILRGMPGIADTNTSPMTVLKEHKNQ
Ga0373905_074999Ga0373905_074999_230_412F037436MPEKQPKRPNNNAKALENWESEGGAPASDDRSTKRKRPRDLNQITKAQPLTDHKQKPKRT
Ga0373905_075311Ga0373905_075311_218_421F088154MDSWVLYGTVWFIVWVICLWLVWRMVDRKDLNRALWIILCIFFPVIILIVVALLPPKQRPEPPEMIQ
Ga0373905_079387Ga0373905_079387_19_459F055835MKKVILCLLAMGIVGFLGCSSRTELVKNANFPEITNNDYSTVYMFRESRLHGSAIAGPIQINGLYLFRIGNGDCVTFKIPTGQSEIVYVPETNRVKFVSERGKKYYFYLRVDAGKSDSDFRQLSAEEWNEKQKACNWVELKKEKGD
Ga0373905_082924Ga0373905_082924_1_504F093160VLSTIIHGNPVPGWWQPTCDANNYCGVRGVADLWPTASACYGIDDEAEEADKMAVDPDGNVYIIDDRYRVAKINGGTGKVDKVLAIPGYDCERSVPDGSTVVLRNTANNIAYMALGQGKLYVTSEQNTLTLIDPRYMTIKAKLTIPKAVELDAITTDPGLNRVYITDE
Ga0373905_083893Ga0373905_083893_143_523F009540LHGLAADVRDDEGRVKAVCAVPIPHCAQGFLVQADAGSGGGKLSLGIGARARVDEEDFHGTVGVGLKASLVRTWGSPIGTEPDLTYLGPELDLSVVRVNLSLGVLWRVSGHTGGSALFSWGLGFGL
Ga0373905_086805Ga0373905_086805_248_517F002839MGQRRYFEARGEESGEWLVLDAKRHPPRVICRCLGWSAPKNAALIVAALEAHDAELYAKFALEGSGRPDEPPAVKPSLPSGKAEPASAPK
Ga0373905_087098Ga0373905_087098_1_489F077454REDLARRKEQWIRRTEQGEDADRVRRELKLKLKTSSLPWLRQRYQAGGRKWSALLERRHGIATKGTAEVKAFLKKAKERDAQVTGAELCVQVWERFEIDLSLSRLNELLHAEGLSNAPGRPQKAAPPEMSSATEREVDNAGAFFPSGRVDRTGRTGGRAKRR
Ga0373905_088243Ga0373905_088243_396_503F029499MNDYDAYDAVVMGVLEPILVLSVMAVIAFLVRLSW
Ga0373905_090640Ga0373905_090640_1_138F008952MQRLLTEIEKVEIIECEWAKARAKNPKVVMRVDVQDETDESGKPRV
Ga0373905_094221Ga0373905_094221_126_500F020376MDGKAGTRHERWVQRTEAAYRRMFEGKSQEELVTLTQRENMAMLIAKELAAFVLEEHVASDSAAQPVEASTTCCPKCGQPGTPAVEGDEALPERTVTTRAGEIRVRRLRWRCGQCRIIFFSARRS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.