NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F088270

Metagenome Family F088270

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088270
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 40 residues
Representative Sequence MIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILF
Number of Associated Samples 34
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 5.71 %
% of genes near scaffold ends (potentially truncated) 16.51 %
% of genes from short scaffolds (< 2000 bps) 71.56 %
Associated GOLD sequencing projects 30
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (68.807 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment
(29.358 % of family members)
Environment Ontology (ENVO) Unclassified
(42.202 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(33.028 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90
1TB_LI09_3DRAFT_11240621
2Ga0079306_11879081
3Ga0105095_100251385
4Ga0105095_100268753
5Ga0105095_100307385
6Ga0105095_100437133
7Ga0105095_100549333
8Ga0105095_101050851
9Ga0105095_101074421
10Ga0105095_101253624
11Ga0105095_101273713
12Ga0105095_101847082
13Ga0105095_102026011
14Ga0105095_102865221
15Ga0105095_103203641
16Ga0105095_103517972
17Ga0105095_103879022
18Ga0105095_106620742
19Ga0105095_106857852
20Ga0105090_103276641
21Ga0105106_105418451
22Ga0105107_103751462
23Ga0105094_104880161
24Ga0105094_105425122
25Ga0105100_104970481
26Ga0105100_105133882
27Ga0105101_100684432
28Ga0105101_101944111
29Ga0105101_102861142
30Ga0105101_103146742
31Ga0105101_103726272
32Ga0136847_102865512
33Ga0136847_110810952
34Ga0136847_126447467
35Ga0136847_128751891
36Ga0137347_10923481
37Ga0153915_100684942
38Ga0153915_100750373
39Ga0153915_101466552
40Ga0153915_103340572
41Ga0153915_106630832
42Ga0153915_107446922
43Ga0153915_111847001
44Ga0153915_112482131
45Ga0153915_114726642
46Ga0153915_119952532
47Ga0153915_126339181
48Ga0153915_128688561
49Ga0153915_131703621
50Ga0153915_132452611
51Ga0153915_134812072
52Ga0153915_135566671
53Ga0153916_102170061
54Ga0153916_105200711
55Ga0153916_106153601
56Ga0153916_108500022
57Ga0153916_118270451
58Ga0153916_127509681
59Ga0075352_12430882
60Ga0184631_100951292
61Ga0209521_103857021
62Ga0209642_100496892
63Ga0209286_13133423
64Ga0209592_11436322
65Ga0209592_12353152
66Ga0214474_10804441
67Ga0256868_101431341
68Ga0299915_100183443
69Ga0299915_100639553
70Ga0299915_101875221
71Ga0299915_108126911
72Ga0299915_108167772
73Ga0315290_101090354
74Ga0315297_100505124
75Ga0315297_101978811
76Ga0315297_116091412
77Ga0315295_101477371
78Ga0315295_110351912
79Ga0315281_101156892
80Ga0315281_101773924
81Ga0315281_101792261
82Ga0315286_107085022
83Ga0315275_100989853
84Ga0315273_100230131
85Ga0315273_101166674
86Ga0315273_102780481
87Ga0316624_100151044
88Ga0316624_100205015
89Ga0316624_101040423
90Ga0316624_101239191
91Ga0316624_101522562
92Ga0316624_102770362
93Ga0316624_103750871
94Ga0316624_111269281
95Ga0316624_113374811
96Ga0316624_117396561
97Ga0299912_101594635
98Ga0299912_102396351
99Ga0299912_102494522
100Ga0299912_112993392
101Ga0299912_113402751
102Ga0316628_1002670603
103Ga0316628_1003829952
104Ga0316628_1005437782
105Ga0316628_1008892613
106Ga0316628_1010629643
107Ga0316628_1013574882
108Ga0373907_090267_433_570
109Ga0373905_041093_494_667
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 8.33%    β-sheet: 0.00%    Coil/Unstructured: 91.67%
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Variant

5101520253035MIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILFSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
68.8%31.2%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Sediment
Sediment
Freshwater Sediment
Freshwater Wetlands
Groundwater
Soil
Groundwater Sediment
Soil
Soil
Soil
Soil
Natural And Restored Wetlands
Soil
Deep Subsurface
Sediment Slurry
29.4%12.8%3.7%20.2%5.5%5.5%14.7%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
TB_LI09_3DRAFT_112406213300000229GroundwaterPLTLALSLRGRGDYNWFLPLEGGGLGEGEMSILF*
Ga0079306_118790813300007959Deep SubsurfaceMIPLTLALSLRGRGDYSWFLPIEVRLRRLVRTQADSPRRAEERGGLGEGEMSILFCDR*
Ga0105095_1002513853300009053Freshwater SedimentMIPLTLALSLRGRGDCSWFLPLEGGGLGEGEMSILF*
Ga0105095_1002687533300009053Freshwater SedimentMIPLTLAPSLQGRGDYSWFLPLEGGALREGEMSILF*
Ga0105095_1003073853300009053Freshwater SedimentMIPLTLALSLRGRGDYSWVLPLEGGGLGEGEISILF*
Ga0105095_1004371333300009053Freshwater SedimentMIPLTLALSLRGRGDFSWFLPLEGGGLGEGEISILF*
Ga0105095_1005493333300009053Freshwater SedimentMIPLTLPLSLQGRGDYSCFLPLEGGGLGEGEISILF*
Ga0105095_1010508513300009053Freshwater SedimentMIPLTLALSLRGRGDYSWFLPLEGGGLGEGEISILF
Ga0105095_1010744213300009053Freshwater SedimentMIPLTLALSLRGRGDYSLFLPLEGGGLGEGEMSILF*
Ga0105095_1012536243300009053Freshwater SedimentMIPLTLALSLQGRGDYNWFLPLEGGGLGEGEISILL*
Ga0105095_1012737133300009053Freshwater SedimentMIPLTLALSLRGRGDYSWFLPLEGRLRRLVRTQADSPRRAEERGGL
Ga0105095_1018470823300009053Freshwater SedimentMIPLTLALSLRGRGDYSWFLPHEGRLKRLAEERGGLGEGEISILF*
Ga0105095_1020260113300009053Freshwater SedimentMIPLTLALSLQGRGDYSWFLPVEGRLKRLAGERGGLGEGEISILF*
Ga0105095_1028652213300009053Freshwater SedimentMIPLTLPLSLQGRGDYSWSLPLEGGGLGEGEISILF*
Ga0105095_1032036413300009053Freshwater SedimentMIPLTLALSLQGRGEYSWFLPLEGGGLGEGEISILL*
Ga0105095_1035179723300009053Freshwater SedimentMIPLTLALSLRGRGDYSWFLSIEGSLKRLVRTQAASPRRAEE*
Ga0105095_1038790223300009053Freshwater SedimentMIPLTLALSLRGRGDYGCFLPLEGRLRRLAEERGGLEEGEMSILF*
Ga0105095_1066207423300009053Freshwater SedimentMIPLTLALSLQGRGDYSWFLPLEGGGLGEGEISILL*
Ga0105095_1068578523300009053Freshwater SedimentMSPLTLALSLRGRGDYNWFLPLEGGGLGEGEMSILF*
Ga0105090_1032766413300009075Freshwater SedimentMNPLTLALSRKGRGDCSWFLPLEGGGLGEGETIPLLH*
Ga0105106_1054184513300009078Freshwater SedimentMIPLTLALSLRGRGDYSWFLPLEGGGLGEGEISILFLDC*
Ga0105107_1037514623300009087Freshwater SedimentMIPLTLALSLHGRGDYSWLLPLEGGGLGEGEISILF*
Ga0105094_1048801613300009153Freshwater SedimentMIPLTLALSLRERGDYSWFLPLEGGGLGEGEMSILF*
Ga0105094_1054251223300009153Freshwater SedimentMIPLTLALSLRGRGDYSWLLPLEGGGLGEGEMSIYFETVNN
Ga0105100_1049704813300009166Freshwater SedimentMIPLTLALSLRGEGIIAGSSPLGGGRMGEGEMSILF*
Ga0105100_1051338823300009166Freshwater SedimentMIPLTLALSLRGRGDYSWFLPLEGGGLGEGEISILV*
Ga0105101_1006844323300009171Freshwater SedimentMIPLTLALSLQGRGDFSWFLPLEGRLRRLVRTQADSPRRAEERGGLGEGEMSILF*
Ga0105101_1019441113300009171Freshwater SedimentMIPLTLALSLRGRGDYSWFLPLEGGGLGEGEISILF*
Ga0105101_1028611423300009171Freshwater SedimentPLTLALSLQGRGDYSWFLPLEGGGLGEGEISILL*
Ga0105101_1031467423300009171Freshwater SedimentMISLTLALSLQGRGDYSWFLPLEGGGLGEGEISILF*
Ga0105101_1037262723300009171Freshwater SedimentMIPLTLALSLQGRGDYSWFLPLEGGGLGEGEMSILF*
Ga0136847_1028655123300010391Freshwater SedimentMIPLTLPLSLQGRGDYSWFLPLEGGGLGEGEMSILF*
Ga0136847_1108109523300010391Freshwater SedimentMIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILFWDR*
Ga0136847_1264474673300010391Freshwater SedimentMIPLTLALSLRGRGDYSSFLPIEGGGLGEGEMSILF*
Ga0136847_1287518913300010391Freshwater SedimentMIPLTLALSLRGRGDYIWFFPLEGRLRRLVRTQADSPRRAEERRGLGEGEMSMLF*
Ga0137347_109234813300012152SoilMIPLTLALSLRGRRDYSWFLPLEGGGLGEGELSILF*
Ga0153915_1006849423300012931Freshwater WetlandsMIPLTLALSLQGRGNYGWFLPLEGGGAGEGEISILF*
Ga0153915_1007503733300012931Freshwater WetlandsMIPLTLALSLRGRGDYNWFLPLGGGLGEGEMSILF*
Ga0153915_1014665523300012931Freshwater WetlandsMIPLTLALSLRGRGDYSWFLTLEEGGLGEGEISILF*
Ga0153915_1033405723300012931Freshwater WetlandsMIPLTLALSLQGRGDYSWFLPLEGGGLGEGEISILF*
Ga0153915_1066308323300012931Freshwater WetlandsMIPLTLALSLRGRGDYSWFLPHEGGGLGEGEMLILF*
Ga0153915_1074469223300012931Freshwater WetlandsMIPLTLALSLRGRGDYSLFLPLEGGGLGEGEMSILL*
Ga0153915_1118470013300012931Freshwater WetlandsIPLTLALSLQGRGDYSWFLPLEGGGLGEGEISILF*
Ga0153915_1124821313300012931Freshwater WetlandsMIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILFWNRY*
Ga0153915_1147266423300012931Freshwater WetlandsMIPLTLALSLQGRWDYSWFLPLEGGGLGEGEISTLF*
Ga0153915_1199525323300012931Freshwater WetlandsPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILF*
Ga0153915_1263391813300012931Freshwater WetlandsMSPLTLALSLRGRWDYSWFLALEGRLRRLAEERRGLGEGEMSILL*
Ga0153915_1286885613300012931Freshwater WetlandsTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEISILL*
Ga0153915_1317036213300012931Freshwater WetlandsMIPLTLALSLRGRGDYSWFLALEGGGLGEGENVNTSLRLLICSVIPLY
Ga0153915_1324526113300012931Freshwater WetlandsLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEISILF*
Ga0153915_1348120723300012931Freshwater WetlandsMIPLTLALSLRGRGDYSWFLPLEGGGLGEVEMTILF*
Ga0153915_1355666713300012931Freshwater WetlandsMIPLTLALSLRGRGDYNWFLPLEGRGLGEGEMSILF*
Ga0153916_1021700613300012964Freshwater WetlandsMIPLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEISILF*
Ga0153916_1052007113300012964Freshwater WetlandsMIPLTLALSLRGRGDYSCFLPLEGGGLGEGEMSILF*
Ga0153916_1061536013300012964Freshwater WetlandsMIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILFWNR*
Ga0153916_1085000223300012964Freshwater WetlandsMIPLTLALSLRGRGDYSWFLTLEGGGLGEGEISILF*
Ga0153916_1182704513300012964Freshwater WetlandsMIPLTLALSLRGRGDYSWFLPLEGRLRRLVRTQADSPRRAEERGGLGEGEMSILF*
Ga0153916_1275096813300012964Freshwater WetlandsMIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILF*
Ga0075352_124308823300014324Natural And Restored WetlandsVNLSIPLTLALSLQGRGDYSWFLPLEGGGLGEGEMSILF*
Ga0184631_1009512923300018070Groundwater SedimentMIPLTLALSLQGRGDYRWFLPIEGRLRRLAKERGGLGEGEMSILF
Ga0209521_1038570213300025164SoilMIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILF
Ga0209642_1004968923300025167SoilMIPLTLALSLRGRGDYRWFLPLEGGALGEGEMSILF
Ga0209286_131334233300027713Freshwater SedimentMIPLTLALSLQGRGDYSWFLPLEGGGLGEGEISILF
Ga0209592_114363223300027731Freshwater SedimentMIPLTLALSLQGRGEYSWFLPLEGGGLGEGEISILL
Ga0209592_123531523300027731Freshwater SedimentMIPLTLALSLRGRGDFSWFLPLEGGGLGEGEISILF
Ga0214474_108044413300027740SoilMIPLTLALSLQGRGDYSWLLPFEGRLRRLAEERGGLGEGEMSILFWNR
Ga0256868_1014313413300027811SoilGRGDYSWFLPLEGRLRRLVRTQADSPRRAEERGGLREGEMSILF
Ga0299915_1001834433300030613SoilMIPLTLALSSPGERDYSWSLPLEGRLRRLVRTQADSPRRAEERGGLGEGKMSILF
Ga0299915_1006395533300030613SoilMIPLTLALSLQGRGDYSWLLPFEGRLRRLAEERGGLGEGEMSILF
Ga0299915_1018752213300030613SoilMIPLIFALSLQGRGDYSWLLPLEGRLRRLAEERGGLGEGEMSILF
Ga0299915_1081269113300030613SoilMIPLTLALSLQGRGDYSWFLPLEGRLRRLVRTQADSPRRAEERGGLREGKMSI
Ga0299915_1081677723300030613SoilMIPLTLALSLRVRVDYSWFLPIEGRLRRLVRTQADSPRRAEERGGLGEGGMSILF
Ga0315290_1010903543300031834SedimentMIPLTLALSLQGRGDYIWSLPLEGGGLGKGEMSILF
Ga0315297_1005051243300031873SedimentMIPLTLALSLRGRGDYSWLLPLEGGGLGEGEMSILF
Ga0315297_1019788113300031873SedimentMITLTLALSLRGRGDYSWFLPIEGGGLGEGEMSILF
Ga0315297_1160914123300031873SedimentMTPLTLALSLQGRGDYSWFLPLEGGGLGEGEMSILF
Ga0315295_1014773713300032156SedimentMIPLTLALSLRGRGDYSWFLLIEGGGLGEGKMSILF
Ga0315295_1103519123300032156SedimentMIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSLLL
Ga0315281_1011568923300032163SedimentMIPLTLALSLRGRGGYSWFLPLEGGGLGEGKMSILF
Ga0315281_1017739243300032163SedimentMIPLTLALSLQGRGDYGWFLPLEGGGLGEGEMSILF
Ga0315281_1017922613300032163SedimentMIPLTLALSLRGRGDYIWFLPLDGGGLGEGEMSILF
Ga0315286_1070850223300032342SedimentMIPLPLALSLQGRGDYIWSLPLEGGGLGEGEMSILF
Ga0315275_1009898533300032401SedimentMIPLTLALSLRGRGYYNRFLPPERGGLGEGEMSILF
Ga0315273_1002301313300032516SedimentMIPLTLPLSLQGRGNYSWLLPLEGGGLGEGEMSILF
Ga0315273_1011666743300032516SedimentMIPLTLALSLQGRGDYNWFLPLEGRLRRLVRTQADSPRRAEERGGLGEGEMSILF
Ga0315273_1027804813300032516SedimentWFLPLEGSLRRLVRTQADSPRRAEERGGLGEGEMSILF
Ga0316624_1001510443300033486SoilMIPLTLALSLRGRGDYSWFLPLEGRLKRLAEERGGLGEGEISMLF
Ga0316624_1002050153300033486SoilMIPLTLALSLSLRGRGDYGWFLPLEGGGLGEGEMSILF
Ga0316624_1010404233300033486SoilMIPLTLALSLQGRGDYSWFLPLEGGGLGEGEMSILF
Ga0316624_1012391913300033486SoilMIPLTLALSLRGRGDYSWFLTLEEGGLGEGEISILF
Ga0316624_1015225623300033486SoilMIPLTLALSLQGRWDYSWFLPLEGGGLGEGEISTLF
Ga0316624_1027703623300033486SoilMIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILFWNRY
Ga0316624_1037508713300033486SoilVSPLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEMSILF
Ga0316624_1112692813300033486SoilMIPLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEISILF
Ga0316624_1133748113300033486SoilMIPLTRALSLRGRGDYSWFLPLEGRLRRLAEERGGLGEG
Ga0316624_1173965613300033486SoilMIPLTLALSLRGRGDYRWFLPLEGGGLGEGEMSILF
Ga0299912_1015946353300033489SoilMEMNINSLIIEKTEMIPLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLREGKMSILF
Ga0299912_1023963513300033489SoilVIIHLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEMSI
Ga0299912_1024945223300033489SoilMILLTLALSLRGRVDYSWFLPIEGRLRRLVRTQADSPRRAEERGGLGEGGMSILF
Ga0299912_1129933923300033489SoilRGDYSWFLPLDGRLRRLARTQADSPRRAEERGGLGEAEMSILF
Ga0299912_1134027513300033489SoilIPLIFALSLQGRGDYSWLLPLEGRLRRLAEERGGLGEGEMSILF
Ga0316628_10026706033300033513SoilMIPLTLALSLRGRGDYSWFLPHEGGGLGEGEMLILFLDR
Ga0316628_10038299523300033513SoilMIPLTLALSLQGRGNYGWFLPLEGGGLGEGEMSILF
Ga0316628_10054377823300033513SoilMIPLTLALSLQGRGDYSWFLPLERGGLGEGEISILF
Ga0316628_10088926133300033513SoilMIPLTLALSLRGRGDYSWFLPHEGGGLGEGEMLILF
Ga0316628_10106296433300033513SoilVSPLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEMSI
Ga0316628_10135748823300033513SoilMIPLTLALSLQGRGDYNWFLPLKGGGLGEGEMSILFFETVNN
Ga0373907_090267_433_5703300034388Sediment SlurryMIPLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEMSILF
Ga0373905_041093_494_6673300034414Sediment SlurryMIPLTLALSLRGRGDYRWFLPLEGRLRRLAEERGGLGEGEMSYYFETVNKCITRNRT


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