Basic Information | |
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Family ID | F088270 |
Family Type | Metagenome |
Number of Sequences | 109 |
Average Sequence Length | 40 residues |
Representative Sequence | MIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILF |
Number of Associated Samples | 34 |
Number of Associated Scaffolds | 109 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 5.71 % |
% of genes near scaffold ends (potentially truncated) | 16.51 % |
% of genes from short scaffolds (< 2000 bps) | 71.56 % |
Associated GOLD sequencing projects | 30 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (68.807 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment (29.358 % of family members) |
Environment Ontology (ENVO) | Unclassified (42.202 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (33.028 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 8.33% β-sheet: 0.00% Coil/Unstructured: 91.67% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Sediment Freshwater Sediment Freshwater Wetlands Groundwater Soil Groundwater Sediment Soil Soil Soil Soil Natural And Restored Wetlands Soil Deep Subsurface Sediment Slurry |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
TB_LI09_3DRAFT_11240621 | 3300000229 | Groundwater | PLTLALSLRGRGDYNWFLPLEGGGLGEGEMSILF* |
Ga0079306_11879081 | 3300007959 | Deep Subsurface | MIPLTLALSLRGRGDYSWFLPIEVRLRRLVRTQADSPRRAEERGGLGEGEMSILFCDR* |
Ga0105095_100251385 | 3300009053 | Freshwater Sediment | MIPLTLALSLRGRGDCSWFLPLEGGGLGEGEMSILF* |
Ga0105095_100268753 | 3300009053 | Freshwater Sediment | MIPLTLAPSLQGRGDYSWFLPLEGGALREGEMSILF* |
Ga0105095_100307385 | 3300009053 | Freshwater Sediment | MIPLTLALSLRGRGDYSWVLPLEGGGLGEGEISILF* |
Ga0105095_100437133 | 3300009053 | Freshwater Sediment | MIPLTLALSLRGRGDFSWFLPLEGGGLGEGEISILF* |
Ga0105095_100549333 | 3300009053 | Freshwater Sediment | MIPLTLPLSLQGRGDYSCFLPLEGGGLGEGEISILF* |
Ga0105095_101050851 | 3300009053 | Freshwater Sediment | MIPLTLALSLRGRGDYSWFLPLEGGGLGEGEISILF |
Ga0105095_101074421 | 3300009053 | Freshwater Sediment | MIPLTLALSLRGRGDYSLFLPLEGGGLGEGEMSILF* |
Ga0105095_101253624 | 3300009053 | Freshwater Sediment | MIPLTLALSLQGRGDYNWFLPLEGGGLGEGEISILL* |
Ga0105095_101273713 | 3300009053 | Freshwater Sediment | MIPLTLALSLRGRGDYSWFLPLEGRLRRLVRTQADSPRRAEERGGL |
Ga0105095_101847082 | 3300009053 | Freshwater Sediment | MIPLTLALSLRGRGDYSWFLPHEGRLKRLAEERGGLGEGEISILF* |
Ga0105095_102026011 | 3300009053 | Freshwater Sediment | MIPLTLALSLQGRGDYSWFLPVEGRLKRLAGERGGLGEGEISILF* |
Ga0105095_102865221 | 3300009053 | Freshwater Sediment | MIPLTLPLSLQGRGDYSWSLPLEGGGLGEGEISILF* |
Ga0105095_103203641 | 3300009053 | Freshwater Sediment | MIPLTLALSLQGRGEYSWFLPLEGGGLGEGEISILL* |
Ga0105095_103517972 | 3300009053 | Freshwater Sediment | MIPLTLALSLRGRGDYSWFLSIEGSLKRLVRTQAASPRRAEE* |
Ga0105095_103879022 | 3300009053 | Freshwater Sediment | MIPLTLALSLRGRGDYGCFLPLEGRLRRLAEERGGLEEGEMSILF* |
Ga0105095_106620742 | 3300009053 | Freshwater Sediment | MIPLTLALSLQGRGDYSWFLPLEGGGLGEGEISILL* |
Ga0105095_106857852 | 3300009053 | Freshwater Sediment | MSPLTLALSLRGRGDYNWFLPLEGGGLGEGEMSILF* |
Ga0105090_103276641 | 3300009075 | Freshwater Sediment | MNPLTLALSRKGRGDCSWFLPLEGGGLGEGETIPLLH* |
Ga0105106_105418451 | 3300009078 | Freshwater Sediment | MIPLTLALSLRGRGDYSWFLPLEGGGLGEGEISILFLDC* |
Ga0105107_103751462 | 3300009087 | Freshwater Sediment | MIPLTLALSLHGRGDYSWLLPLEGGGLGEGEISILF* |
Ga0105094_104880161 | 3300009153 | Freshwater Sediment | MIPLTLALSLRERGDYSWFLPLEGGGLGEGEMSILF* |
Ga0105094_105425122 | 3300009153 | Freshwater Sediment | MIPLTLALSLRGRGDYSWLLPLEGGGLGEGEMSIYFETVNN |
Ga0105100_104970481 | 3300009166 | Freshwater Sediment | MIPLTLALSLRGEGIIAGSSPLGGGRMGEGEMSILF* |
Ga0105100_105133882 | 3300009166 | Freshwater Sediment | MIPLTLALSLRGRGDYSWFLPLEGGGLGEGEISILV* |
Ga0105101_100684432 | 3300009171 | Freshwater Sediment | MIPLTLALSLQGRGDFSWFLPLEGRLRRLVRTQADSPRRAEERGGLGEGEMSILF* |
Ga0105101_101944111 | 3300009171 | Freshwater Sediment | MIPLTLALSLRGRGDYSWFLPLEGGGLGEGEISILF* |
Ga0105101_102861142 | 3300009171 | Freshwater Sediment | PLTLALSLQGRGDYSWFLPLEGGGLGEGEISILL* |
Ga0105101_103146742 | 3300009171 | Freshwater Sediment | MISLTLALSLQGRGDYSWFLPLEGGGLGEGEISILF* |
Ga0105101_103726272 | 3300009171 | Freshwater Sediment | MIPLTLALSLQGRGDYSWFLPLEGGGLGEGEMSILF* |
Ga0136847_102865512 | 3300010391 | Freshwater Sediment | MIPLTLPLSLQGRGDYSWFLPLEGGGLGEGEMSILF* |
Ga0136847_110810952 | 3300010391 | Freshwater Sediment | MIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILFWDR* |
Ga0136847_126447467 | 3300010391 | Freshwater Sediment | MIPLTLALSLRGRGDYSSFLPIEGGGLGEGEMSILF* |
Ga0136847_128751891 | 3300010391 | Freshwater Sediment | MIPLTLALSLRGRGDYIWFFPLEGRLRRLVRTQADSPRRAEERRGLGEGEMSMLF* |
Ga0137347_10923481 | 3300012152 | Soil | MIPLTLALSLRGRRDYSWFLPLEGGGLGEGELSILF* |
Ga0153915_100684942 | 3300012931 | Freshwater Wetlands | MIPLTLALSLQGRGNYGWFLPLEGGGAGEGEISILF* |
Ga0153915_100750373 | 3300012931 | Freshwater Wetlands | MIPLTLALSLRGRGDYNWFLPLGGGLGEGEMSILF* |
Ga0153915_101466552 | 3300012931 | Freshwater Wetlands | MIPLTLALSLRGRGDYSWFLTLEEGGLGEGEISILF* |
Ga0153915_103340572 | 3300012931 | Freshwater Wetlands | MIPLTLALSLQGRGDYSWFLPLEGGGLGEGEISILF* |
Ga0153915_106630832 | 3300012931 | Freshwater Wetlands | MIPLTLALSLRGRGDYSWFLPHEGGGLGEGEMLILF* |
Ga0153915_107446922 | 3300012931 | Freshwater Wetlands | MIPLTLALSLRGRGDYSLFLPLEGGGLGEGEMSILL* |
Ga0153915_111847001 | 3300012931 | Freshwater Wetlands | IPLTLALSLQGRGDYSWFLPLEGGGLGEGEISILF* |
Ga0153915_112482131 | 3300012931 | Freshwater Wetlands | MIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILFWNRY* |
Ga0153915_114726642 | 3300012931 | Freshwater Wetlands | MIPLTLALSLQGRWDYSWFLPLEGGGLGEGEISTLF* |
Ga0153915_119952532 | 3300012931 | Freshwater Wetlands | PLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILF* |
Ga0153915_126339181 | 3300012931 | Freshwater Wetlands | MSPLTLALSLRGRWDYSWFLALEGRLRRLAEERRGLGEGEMSILL* |
Ga0153915_128688561 | 3300012931 | Freshwater Wetlands | TLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEISILL* |
Ga0153915_131703621 | 3300012931 | Freshwater Wetlands | MIPLTLALSLRGRGDYSWFLALEGGGLGEGENVNTSLRLLICSVIPLY |
Ga0153915_132452611 | 3300012931 | Freshwater Wetlands | LQGRGDYSWFLPLEGRLRRLAEERGGLGEGEISILF* |
Ga0153915_134812072 | 3300012931 | Freshwater Wetlands | MIPLTLALSLRGRGDYSWFLPLEGGGLGEVEMTILF* |
Ga0153915_135566671 | 3300012931 | Freshwater Wetlands | MIPLTLALSLRGRGDYNWFLPLEGRGLGEGEMSILF* |
Ga0153916_102170061 | 3300012964 | Freshwater Wetlands | MIPLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEISILF* |
Ga0153916_105200711 | 3300012964 | Freshwater Wetlands | MIPLTLALSLRGRGDYSCFLPLEGGGLGEGEMSILF* |
Ga0153916_106153601 | 3300012964 | Freshwater Wetlands | MIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILFWNR* |
Ga0153916_108500022 | 3300012964 | Freshwater Wetlands | MIPLTLALSLRGRGDYSWFLTLEGGGLGEGEISILF* |
Ga0153916_118270451 | 3300012964 | Freshwater Wetlands | MIPLTLALSLRGRGDYSWFLPLEGRLRRLVRTQADSPRRAEERGGLGEGEMSILF* |
Ga0153916_127509681 | 3300012964 | Freshwater Wetlands | MIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILF* |
Ga0075352_12430882 | 3300014324 | Natural And Restored Wetlands | VNLSIPLTLALSLQGRGDYSWFLPLEGGGLGEGEMSILF* |
Ga0184631_100951292 | 3300018070 | Groundwater Sediment | MIPLTLALSLQGRGDYRWFLPIEGRLRRLAKERGGLGEGEMSILF |
Ga0209521_103857021 | 3300025164 | Soil | MIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILF |
Ga0209642_100496892 | 3300025167 | Soil | MIPLTLALSLRGRGDYRWFLPLEGGALGEGEMSILF |
Ga0209286_13133423 | 3300027713 | Freshwater Sediment | MIPLTLALSLQGRGDYSWFLPLEGGGLGEGEISILF |
Ga0209592_11436322 | 3300027731 | Freshwater Sediment | MIPLTLALSLQGRGEYSWFLPLEGGGLGEGEISILL |
Ga0209592_12353152 | 3300027731 | Freshwater Sediment | MIPLTLALSLRGRGDFSWFLPLEGGGLGEGEISILF |
Ga0214474_10804441 | 3300027740 | Soil | MIPLTLALSLQGRGDYSWLLPFEGRLRRLAEERGGLGEGEMSILFWNR |
Ga0256868_101431341 | 3300027811 | Soil | GRGDYSWFLPLEGRLRRLVRTQADSPRRAEERGGLREGEMSILF |
Ga0299915_100183443 | 3300030613 | Soil | MIPLTLALSSPGERDYSWSLPLEGRLRRLVRTQADSPRRAEERGGLGEGKMSILF |
Ga0299915_100639553 | 3300030613 | Soil | MIPLTLALSLQGRGDYSWLLPFEGRLRRLAEERGGLGEGEMSILF |
Ga0299915_101875221 | 3300030613 | Soil | MIPLIFALSLQGRGDYSWLLPLEGRLRRLAEERGGLGEGEMSILF |
Ga0299915_108126911 | 3300030613 | Soil | MIPLTLALSLQGRGDYSWFLPLEGRLRRLVRTQADSPRRAEERGGLREGKMSI |
Ga0299915_108167772 | 3300030613 | Soil | MIPLTLALSLRVRVDYSWFLPIEGRLRRLVRTQADSPRRAEERGGLGEGGMSILF |
Ga0315290_101090354 | 3300031834 | Sediment | MIPLTLALSLQGRGDYIWSLPLEGGGLGKGEMSILF |
Ga0315297_100505124 | 3300031873 | Sediment | MIPLTLALSLRGRGDYSWLLPLEGGGLGEGEMSILF |
Ga0315297_101978811 | 3300031873 | Sediment | MITLTLALSLRGRGDYSWFLPIEGGGLGEGEMSILF |
Ga0315297_116091412 | 3300031873 | Sediment | MTPLTLALSLQGRGDYSWFLPLEGGGLGEGEMSILF |
Ga0315295_101477371 | 3300032156 | Sediment | MIPLTLALSLRGRGDYSWFLLIEGGGLGEGKMSILF |
Ga0315295_110351912 | 3300032156 | Sediment | MIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSLLL |
Ga0315281_101156892 | 3300032163 | Sediment | MIPLTLALSLRGRGGYSWFLPLEGGGLGEGKMSILF |
Ga0315281_101773924 | 3300032163 | Sediment | MIPLTLALSLQGRGDYGWFLPLEGGGLGEGEMSILF |
Ga0315281_101792261 | 3300032163 | Sediment | MIPLTLALSLRGRGDYIWFLPLDGGGLGEGEMSILF |
Ga0315286_107085022 | 3300032342 | Sediment | MIPLPLALSLQGRGDYIWSLPLEGGGLGEGEMSILF |
Ga0315275_100989853 | 3300032401 | Sediment | MIPLTLALSLRGRGYYNRFLPPERGGLGEGEMSILF |
Ga0315273_100230131 | 3300032516 | Sediment | MIPLTLPLSLQGRGNYSWLLPLEGGGLGEGEMSILF |
Ga0315273_101166674 | 3300032516 | Sediment | MIPLTLALSLQGRGDYNWFLPLEGRLRRLVRTQADSPRRAEERGGLGEGEMSILF |
Ga0315273_102780481 | 3300032516 | Sediment | WFLPLEGSLRRLVRTQADSPRRAEERGGLGEGEMSILF |
Ga0316624_100151044 | 3300033486 | Soil | MIPLTLALSLRGRGDYSWFLPLEGRLKRLAEERGGLGEGEISMLF |
Ga0316624_100205015 | 3300033486 | Soil | MIPLTLALSLSLRGRGDYGWFLPLEGGGLGEGEMSILF |
Ga0316624_101040423 | 3300033486 | Soil | MIPLTLALSLQGRGDYSWFLPLEGGGLGEGEMSILF |
Ga0316624_101239191 | 3300033486 | Soil | MIPLTLALSLRGRGDYSWFLTLEEGGLGEGEISILF |
Ga0316624_101522562 | 3300033486 | Soil | MIPLTLALSLQGRWDYSWFLPLEGGGLGEGEISTLF |
Ga0316624_102770362 | 3300033486 | Soil | MIPLTLALSLRGRGDYSWFLPLEGGGLGEGEMSILFWNRY |
Ga0316624_103750871 | 3300033486 | Soil | VSPLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEMSILF |
Ga0316624_111269281 | 3300033486 | Soil | MIPLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEISILF |
Ga0316624_113374811 | 3300033486 | Soil | MIPLTRALSLRGRGDYSWFLPLEGRLRRLAEERGGLGEG |
Ga0316624_117396561 | 3300033486 | Soil | MIPLTLALSLRGRGDYRWFLPLEGGGLGEGEMSILF |
Ga0299912_101594635 | 3300033489 | Soil | MEMNINSLIIEKTEMIPLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLREGKMSILF |
Ga0299912_102396351 | 3300033489 | Soil | VIIHLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEMSI |
Ga0299912_102494522 | 3300033489 | Soil | MILLTLALSLRGRVDYSWFLPIEGRLRRLVRTQADSPRRAEERGGLGEGGMSILF |
Ga0299912_112993392 | 3300033489 | Soil | RGDYSWFLPLDGRLRRLARTQADSPRRAEERGGLGEAEMSILF |
Ga0299912_113402751 | 3300033489 | Soil | IPLIFALSLQGRGDYSWLLPLEGRLRRLAEERGGLGEGEMSILF |
Ga0316628_1002670603 | 3300033513 | Soil | MIPLTLALSLRGRGDYSWFLPHEGGGLGEGEMLILFLDR |
Ga0316628_1003829952 | 3300033513 | Soil | MIPLTLALSLQGRGNYGWFLPLEGGGLGEGEMSILF |
Ga0316628_1005437782 | 3300033513 | Soil | MIPLTLALSLQGRGDYSWFLPLERGGLGEGEISILF |
Ga0316628_1008892613 | 3300033513 | Soil | MIPLTLALSLRGRGDYSWFLPHEGGGLGEGEMLILF |
Ga0316628_1010629643 | 3300033513 | Soil | VSPLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEMSI |
Ga0316628_1013574882 | 3300033513 | Soil | MIPLTLALSLQGRGDYNWFLPLKGGGLGEGEMSILFFETVNN |
Ga0373907_090267_433_570 | 3300034388 | Sediment Slurry | MIPLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEMSILF |
Ga0373905_041093_494_667 | 3300034414 | Sediment Slurry | MIPLTLALSLRGRGDYRWFLPLEGRLRRLAEERGGLGEGEMSYYFETVNKCITRNRT |
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