Metagenome Family F084411

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F084411
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	64 residues
Representative Sequence	MAAALVAGLLAAGCGGGGSSPAATTPPPSGGDDPAKLVVLDSGNFEALVLAMPRPSLVKFQSPT
Number of Associated Samples	71
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.90 %
% of genes near scaffold ends (potentially truncated)	30.36 %
% of genes from short scaffolds (< 2000 bps)	80.36 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (76.786 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (29.464 % of family members)
Environment Ontology (ENVO)	Unclassified (41.964 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (50.893 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 17.39% β-sheet: 0.00% Coil/Unstructured: 82.61%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00085	Thioredoxin	50.00
PF07670	Gate	8.04
PF04685	DUF608	3.57
PF00246	Peptidase_M14	3.57
PF00270	DEAD	2.68
PF13231	PMT_2	1.79
PF14534	DUF4440	1.79
PF12801	Fer4_5	1.79
PF00005	ABC_tran	1.79
PF02405	MlaE	0.89
PF13649	Methyltransf_25	0.89
PF13472	Lipase_GDSL_2	0.89
PF07676	PD40	0.89
PF00795	CN_hydrolase	0.89
PF13561	adh_short_C2	0.89
PF01850	PIN	0.89
PF07690	MFS_1	0.89
PF13180	PDZ_2	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG4354	Uncharacterized conserved protein, contains GBA2_N and DUF608 domains	Function unknown [S]	3.57
COG0767	Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.79 %
Unclassified	root	N/A	23.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.79 %
Unclassified	root	N/A	23.21 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.79 %
Unclassified	root	N/A	23.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.21 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	20.54 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	6.25 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	5.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.21 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	20.54 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.57 %
Candidatus Latescibacteria	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria	3.57 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.79 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.21 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	20.54 %
unclassified Candidatus Latescibacteria	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria	3.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.68 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.79 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Acidobacteria bacterium RBG_16_70_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_16_70_10	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.21 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	20.54 %
Candidatus Latescibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	3.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.68 %
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1.79 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Acidobacteria bacterium RBG_16_70_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_16_70_10	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.21 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	20.54 %
Candidatus Latescibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	3.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.68 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1.79 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Acidobacteria bacterium RBG_16_70_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_16_70_10	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.21 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	20.54 %
Candidatus Latescibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	3.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.68 %
Prevotellaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1.79 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Acidobacteria bacterium RBG_16_70_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_16_70_10	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.21 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	20.54 %
Candidatus Latescibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	3.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.68 %
Prevotella	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1.79 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Acidobacteria bacterium RBG_16_70_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_16_70_10	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.21 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	20.54 %
Candidatus Latescibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	3.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.68 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → environmental samples	1.79 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Acidobacteria bacterium RBG_16_70_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_16_70_10	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.21 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	20.54 %
Candidatus Latescibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	3.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.68 %
Prevotella sp. CAG:1124	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → environmental samples → Prevotella sp. CAG:1124	1.79 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Acidobacteria bacterium RBG_16_70_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_16_70_10	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_101502763	Not Available	610	Open in IMG/M
3300001213\|JGIcombinedJ13530_108122401	Not Available	581	Open in IMG/M
3300004282\|Ga0066599_100153027	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1189	Open in IMG/M
3300004779\|Ga0062380_10094234	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300004781\|Ga0062379_10099218	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300005836\|Ga0074470_11465485	All Organisms → cellular organisms → Bacteria → Proteobacteria	9877	Open in IMG/M
3300006224\|Ga0079037_101417422	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300006224\|Ga0079037_101629059	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300006224\|Ga0079037_101790987	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300009078\|Ga0105106_10042420	All Organisms → cellular organisms → Bacteria	3366	Open in IMG/M
3300009085\|Ga0105103_10226303	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300009091\|Ga0102851_10137778	All Organisms → cellular organisms → Bacteria	2196	Open in IMG/M
3300009091\|Ga0102851_10645013	Not Available	1113	Open in IMG/M
3300009091\|Ga0102851_11124256	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300009091\|Ga0102851_12129245	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300009111\|Ga0115026_10454269	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	942	Open in IMG/M
3300009111\|Ga0115026_10526615	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300009131\|Ga0115027_10251520	Not Available	1160	Open in IMG/M
3300009131\|Ga0115027_10906380	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300009166\|Ga0105100_10533084	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300009167\|Ga0113563_10080939	All Organisms → cellular organisms → Bacteria	2895	Open in IMG/M
3300009169\|Ga0105097_10098683	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1596	Open in IMG/M
3300009170\|Ga0105096_10555260	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	601	Open in IMG/M
3300009179\|Ga0115028_11966820	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	514	Open in IMG/M
3300010412\|Ga0136852_11039401	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	779	Open in IMG/M
3300011402\|Ga0137356_1089402	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	584	Open in IMG/M
3300011408\|Ga0137460_1103194	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	563	Open in IMG/M
3300011413\|Ga0137333_1041599	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1037	Open in IMG/M
3300011414\|Ga0137442_1159638	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	504	Open in IMG/M
3300012039\|Ga0137421_1259468	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	502	Open in IMG/M
3300012160\|Ga0137349_1018551	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1083	Open in IMG/M
3300012166\|Ga0137350_1112618	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	551	Open in IMG/M
3300012964\|Ga0153916_10368067	All Organisms → cellular organisms → Bacteria	1490	Open in IMG/M
3300013315\|Ga0173609_10255599	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300014264\|Ga0075308_1104803	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300014867\|Ga0180076_1009669	All Organisms → cellular organisms → Bacteria	1489	Open in IMG/M
3300014871\|Ga0180095_1008128	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1502	Open in IMG/M
3300014874\|Ga0180084_1007004	All Organisms → cellular organisms → Bacteria	1862	Open in IMG/M
3300014875\|Ga0180083_1003819	All Organisms → cellular organisms → Bacteria	2230	Open in IMG/M
3300015256\|Ga0180073_1095742	Not Available	638	Open in IMG/M
3300015257\|Ga0180067_1025458	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300018059\|Ga0184615_10054667	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_16_70_10	2223	Open in IMG/M
3300021090\|Ga0210377_10011287	All Organisms → cellular organisms → Bacteria	6877	Open in IMG/M
3300021090\|Ga0210377_10565662	Not Available	646	Open in IMG/M
3300027713\|Ga0209286_1047643	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → environmental samples → Prevotella sp. CAG:1124	1607	Open in IMG/M
3300027831\|Ga0209797_10045994	All Organisms → cellular organisms → Bacteria	1955	Open in IMG/M
3300027831\|Ga0209797_10160742	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300027841\|Ga0209262_10531602	Not Available	572	Open in IMG/M
3300027877\|Ga0209293_10080702	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300027887\|Ga0208980_10368576	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300027890\|Ga0209496_10016170	All Organisms → cellular organisms → Bacteria	2257	Open in IMG/M
3300027900\|Ga0209253_10011013	All Organisms → cellular organisms → Bacteria	7767	Open in IMG/M
3300030613\|Ga0299915_10236956	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300031834\|Ga0315290_10716569	Not Available	861	Open in IMG/M
3300031997\|Ga0315278_10047225	All Organisms → cellular organisms → Bacteria	4210	Open in IMG/M
3300031997\|Ga0315278_11114570	Not Available	779	Open in IMG/M
3300032143\|Ga0315292_10302342	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	1332	Open in IMG/M
3300032163\|Ga0315281_12258894	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	514	Open in IMG/M
3300032164\|Ga0315283_10306285	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	1723	Open in IMG/M
3300032164\|Ga0315283_11199749	Not Available	792	Open in IMG/M
3300032164\|Ga0315283_11636826	Not Available	654	Open in IMG/M
3300032173\|Ga0315268_12246510	Not Available	559	Open in IMG/M
3300032275\|Ga0315270_10752117	Not Available	640	Open in IMG/M
3300032342\|Ga0315286_10462027	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1326	Open in IMG/M
3300032397\|Ga0315287_10238779	Not Available	2130	Open in IMG/M
3300032397\|Ga0315287_10698307	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1198	Open in IMG/M
3300032397\|Ga0315287_12100625	Not Available	619	Open in IMG/M
3300032401\|Ga0315275_11057084	Not Available	890	Open in IMG/M
3300032516\|Ga0315273_10051305	All Organisms → cellular organisms → Bacteria	5576	Open in IMG/M
3300032516\|Ga0315273_11026918	All Organisms → cellular organisms → Bacteria → Acidobacteria	1053	Open in IMG/M
3300032516\|Ga0315273_13184519	Not Available	508	Open in IMG/M
3300033408\|Ga0316605_11826831	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300033408\|Ga0316605_11886178	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	581	Open in IMG/M
3300033408\|Ga0316605_12301407	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	524	Open in IMG/M
3300033413\|Ga0316603_11221149	Not Available	712	Open in IMG/M
3300033413\|Ga0316603_11757337	Not Available	587	Open in IMG/M
3300033413\|Ga0316603_11780149	Not Available	583	Open in IMG/M
3300033414\|Ga0316619_10158916	All Organisms → cellular organisms → Bacteria	1567	Open in IMG/M
3300033414\|Ga0316619_10632830	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	894	Open in IMG/M
3300033414\|Ga0316619_10849679	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300033416\|Ga0316622_100106391	All Organisms → cellular organisms → Bacteria	2828	Open in IMG/M
3300033416\|Ga0316622_100148607	All Organisms → cellular organisms → Bacteria	2437	Open in IMG/M
3300033416\|Ga0316622_100191829	All Organisms → cellular organisms → Bacteria	2170	Open in IMG/M
3300033416\|Ga0316622_100658802	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300033416\|Ga0316622_102037182	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	666	Open in IMG/M
3300033416\|Ga0316622_102109603	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	654	Open in IMG/M
3300033416\|Ga0316622_102205308	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	638	Open in IMG/M
3300033416\|Ga0316622_102466813	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300033418\|Ga0316625_100166969	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → environmental samples → Prevotella sp. CAG:1124	1388	Open in IMG/M
3300033419\|Ga0316601_101866245	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300033419\|Ga0316601_102345954	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	537	Open in IMG/M
3300033433\|Ga0326726_10670390	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1000	Open in IMG/M
3300033433\|Ga0326726_11143914	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300033485\|Ga0316626_10776901	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	839	Open in IMG/M
3300033485\|Ga0316626_11052548	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300033485\|Ga0316626_11083880	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300033486\|Ga0316624_10694572	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300033489\|Ga0299912_10369752	All Organisms → cellular organisms → Bacteria	1183	Open in IMG/M
3300033513\|Ga0316628_100165424	All Organisms → cellular organisms → Bacteria	2611	Open in IMG/M
3300033521\|Ga0316616_100111914	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2452	Open in IMG/M
3300033521\|Ga0316616_100287231	All Organisms → cellular organisms → Bacteria	1731	Open in IMG/M
3300033521\|Ga0316616_101595903	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	850	Open in IMG/M
3300033557\|Ga0316617_100298824	All Organisms → cellular organisms → Bacteria	1361	Open in IMG/M
3300034081\|Ga0373911_076060	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	600	Open in IMG/M
3300034147\|Ga0364925_0024012	All Organisms → cellular organisms → Bacteria → Proteobacteria	1962	Open in IMG/M
3300034191\|Ga0373909_0169236	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	683	Open in IMG/M
3300034414\|Ga0373905_040595	Not Available	691	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.43%
Engineered	Engineered	3.57%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	61.61%
Terrestrial	Environmental → Terrestrial	34.82%
Bioremediation	Engineered → Bioremediation	2.68%
Wastewater	Engineered → Wastewater	0.89%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	44.64%
Soil	Environmental → Terrestrial → Soil	32.14%
Sediment	Environmental → Aquatic → Sediment	14.29%
Marine	Environmental → Aquatic → Marine	2.68%
Metal	Engineered → Bioremediation → Metal	2.68%
Peat	Environmental → Terrestrial → Peat	1.79%
Floodplain	Environmental → Terrestrial → Floodplain	0.89%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.89%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	30.36%
Lake	Environmental → Aquatic → Freshwater → Lake	16.07%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	14.29%
Sediment	Environmental → Aquatic → Freshwater → Sediment	13.39%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.50%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.68%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	2.68%
Pond	Environmental → Aquatic → Freshwater → Pond	1.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.79%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.89%
Mine Water	Engineered → Wastewater → Industrial Wastewater → Mine Water	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	30.36%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	16.07%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	14.29%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	13.39%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	12.50%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	2.68%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	2.68%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.79%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.89%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.89%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.89%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	29.46%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	16.07%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	11.61%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	8.04%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	6.25%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	5.36%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	3.57%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	2.68%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	2.68%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.79%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	1.79%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.79%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.89%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.89%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.89%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.89%
Sediment	Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified → Sediment	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300004781	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare2Fresh	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300010412	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10	Environmental	Open in IMG/M
3300011402	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT830_2	Environmental	Open in IMG/M
3300011408	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT723_2	Environmental	Open in IMG/M
3300011413	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2	Environmental	Open in IMG/M
3300011414	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2	Environmental	Open in IMG/M
3300012039	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT534_2	Environmental	Open in IMG/M
3300012160	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2	Environmental	Open in IMG/M
3300012166	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT660_2	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300013315	Sediment microbial communities from Acid Mine Drainage holding pond in Pittsburgh, PA, USA - 1B	Engineered	Open in IMG/M
3300014264	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D2_rd	Environmental	Open in IMG/M
3300014867	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT433_16_10D	Environmental	Open in IMG/M
3300014871	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_1Da	Environmental	Open in IMG/M
3300014874	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_2_16_10D	Environmental	Open in IMG/M
3300014875	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_1_16_10D	Environmental	Open in IMG/M
3300015256	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT333_16_10D	Environmental	Open in IMG/M
3300015257	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_10D	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027841	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300030613	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034081	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.3	Engineered	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034191	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.1	Engineered	Open in IMG/M
3300034414	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A4.3	Engineered	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1015027631	3300001213	Wetland	VRRMAAALVTGLLAAGCGGGGSSPTAPAPSPSASGDPAQLVVLDASNFDALALSASRPSLVKFQSPT*
JGIcombinedJ13530_1081224011	3300001213	Wetland	VRRLAAALVTGLLAAGCGGGGSSPVATTPSSPGGGDPAKLVVLDSGNFEALALS
Ga0066599_1001530272	3300004282	Freshwater	MAAALVAVLLATGCGGGGSSPAAATPPSSGGGDPAKLVVLDSGNFEALALSVSRPSLVKFQSPT*
Ga0062380_100942343	3300004779	Wetland Sediment	RRRAAVLVAALVAAGCGGGGSSPASTTPPLSGGGDPAKLVVLDSGNFDGLVLAAPRPSLVKFQSPT*
Ga0062379_100992181	3300004781	Wetland Sediment	RSLRANLRVHGDGGLGVRRRAAVLVAALVAAGCGGGGSSPASTTPPLSGGGDPAKLVVLDSGNFDGLVLAAPRPSLVKFQSPT*
Ga0074470_114654854	3300005836	Sediment (Intertidal)	LAAALVAGLLAAGCGGGVSSPVASTPPSSGGGDGAGLVVLDSGNFDALALSVSRPSLVKFQSPT*
Ga0079037_1014174221	3300006224	Freshwater Wetlands	RRANLSCRGKEGPRVKRMAATLVAGLLAAACGGGGSSPAAPTPPSAGGGDATKLVVLDSGNFEALALAPARPSLVKFQSPT*
Ga0079037_1016290592	3300006224	Freshwater Wetlands	VRRWSAFLAVAALLAAGCGGGRTSSPTSPATPSGDSSKLVVLDSGNFDTLVLAAPRPSLVKFQSPT*
Ga0079037_1017909871	3300006224	Freshwater Wetlands	VRRRATVMAVAGLLAAACGGGGGSSSPTAPPVSGGGASKLVVLDSGNFDSLVLAAPRPS
Ga0105106_100424203	3300009078	Freshwater Sediment	VLVASLLAGGCDGGSSSPTTPPSGGDETSKLVVLDSGNFDARVLAAPQPSLVKFQSPT*
Ga0105103_102263032	3300009085	Freshwater Sediment	VRRTAAALVAALLAAGCGGGGSSPVAATPSSPGSGDPSRLVVLDSGTFDALVLATPRPSVVKFQSPT*
Ga0102851_101377783	3300009091	Freshwater Wetlands	VSRRAATALVAALLAMACGGGGRSSPPTSATPPASGGDASKLVVLESTTFDALVLAAPRPSLVKFQSPT*
Ga0102851_106331072	3300009091	Freshwater Wetlands	MALGAALLGVACGGGGSSSSTTPTAPTAPSGSTPTKLVVLDAGNFDAVVLAGPRPSLVKFQSPT*
Ga0102851_106450131	3300009091	Freshwater Wetlands	VKRMAATLVAGLLAAACGGGGSSPAAPTPPSAGGGDATKLVVLDSGNFEALALAP
Ga0102851_111242562	3300009091	Freshwater Wetlands	LAAATVAVLLAAGCGGGGTSSPTTPATPTPPAGDATKLVVLDSGNFDALVLGMARPSLVKFQSPT*
Ga0102851_121292453	3300009091	Freshwater Wetlands	GCGGGGTSSPTASATPTPSAGDATKLLVLDSSNFDTLVLAAPRPSLVKFQSPT*
Ga0115026_104542692	3300009111	Wetland	MVVAAGLLAAACGGGGGFSSPTTPAASGGSSSKLVVLDSGNFDSLVLAAPRPSLVKFQSPT*
Ga0115026_105266153	3300009111	Wetland	MVAVAALLGVRCGGGGSSATSPTTPSAGGGDSSSKLVVLDSGNFDTLVLAPARPSLVEFQSPT*
Ga0115027_102515202	3300009131	Wetland	VRRMAATLVAGLLAAACGGGGSSPAAPTPPSAGGGDATKLVVLDSGNFEALALAPARPSLVKFQSPT*
Ga0115027_109063803	3300009131	Wetland	ALVAVLLSAGCGGGGSSPVATTPPASGGGDPAKLVVLDAGNFDALVLATPRPTLVKFQSPT*
Ga0105100_105330842	3300009166	Freshwater Sediment	VLVASLLAGGCDGGSSSPTTPPSGGDETSKHVVLDSGNFDARVLAAPQPSLVKFQSPT*
Ga0113563_100809394	3300009167	Freshwater Wetlands	VATLVAGLLAAACGGGGSSPAAPTPPSAGGGDATKLVVLDSGNFEALALAPARPSLVKFQSPT*
Ga0105097_100986831	3300009169	Freshwater Sediment	WLVAALLAAGCGGGGSSPASTTPPPSGGGDPSRLVVLDSGTFDALVLATPRPSVVKFQSPT*
Ga0105096_105552601	3300009170	Freshwater Sediment	GGSVRRVAAALVAVLLAAGCGGGGSSPVATTPPSSGGGDPAKLVVLDSGTFDALVLATPRPSVVKFQSPT*
Ga0115028_119668203	3300009179	Wetland	ALVAALLAVACGGRSSPTTSTTPPAPGGDSSKLVVLDSTTFDALVLAAPRPSLVKFQSPT
Ga0136852_110394012	3300010412	Mangrove Sediment	VGLRATAVLAAGLLATGCGGGGSSSPTAPSSPAGGASKLVVLDSGNFGSLVLASPRPSLVKFQSPT*
Ga0137356_10894022	3300011402	Soil	MAAALVAGLLAAGCGGGASSPAATTPPSSGEGDPAKLVVLDSGNFEALVLAMPRPSLVKFQSPT*
Ga0137460_11031942	3300011408	Soil	MAAALVVALLASGCGGGGSSPAATTPPSSGGDDPAKLVVLDSGNFEGLVLAIPRPSLVKFQSPT*
Ga0137333_10415991	3300011413	Soil	RMAAALVAGLLAAGCGGGGSSPAATTPPSSGEGDPAKLVVLDSGNFEALVLAMPRPSLVKFQSPT*
Ga0137442_11596382	3300011414	Soil	MAAALVAGLLGAGCGGGGSSPAATTPPSSGGDDPAKLVVLDSGNFEALVLAMPRPSLVKFQSPT*
Ga0137421_12594682	3300012039	Soil	LVAGLLAAGCGGGGSSPAATTPPSSGGDDPAKLVVLDSGNFEALVLAMPRPSLVKFQSPT
Ga0137349_10185512	3300012160	Soil	MAAALVAGLLAAGCGGGGSSPAATTPPPSGGDDPAKLVVLDSGNFEALVLAMPRPSLVKFQSPT*
Ga0137350_11126182	3300012166	Soil	MAAALVAGLLAAGCGGGGSSPAATTPPSSGEGDPAKLVVLDSGDFEALVLAMPRPSLVKFQSPT*
Ga0153916_103680672	3300012964	Freshwater Wetlands	VGVRRRAAIVAVAALLGVRCGGGGSSATSPTTPSAGGGDSSSKLVVLDSGNFDTLVLAVARPSLVEFQSPT*
Ga0173609_102555992	3300013315	Sediment	MAAALVAALLATGFGGGGSSPAAATPPSSGGGDPAKLVVLDSGNFEALALSVSRPSLVKFQSPT*
Ga0075308_11048031	3300014264	Natural And Restored Wetlands	MAAGCGGGASSPGVTTSPSSGGDDASALVVLGSDDFEALVLAAPRPSLVEFQ
Ga0180076_10096691	3300014867	Soil	RVRRMAAALVAGLLAAGCGGGGSSPAATTPPPSGGDDPAKLVVLDSGNFEALVLAMPRPSLVKFQSPT*
Ga0180095_10081282	3300014871	Soil	MAAALVAGLLAAGCGGGASSPAATTPPSSGEGDPAKLVVLDSGNFEGLVLAIPRPSLVKFQSPT*
Ga0180084_10070043	3300014874	Soil	MAAALGAGLLAAGCGGGGSSPAATTPPSSGEGDPAKLVVLDSGNFEALVLAMPRPSLVKFQSPT*
Ga0180083_10038191	3300014875	Soil	VRRTAAALVAGLLAAGCGGGGSSPAATTPPSSGGDDPAKLVVLDSGNFEALVLAMPRPSLVKFQSPT*
Ga0180073_10957422	3300015256	Soil	VRRMAAALVAGLLAAGCGGGGSSPAATTPPPSGGDDPAKLVVLDSGNFEALVLAMPRPSLVKFQSPT*
Ga0180067_10254582	3300015257	Soil	MAAALVAGLLAAGCGGGGSSPAATTPPSSGEGDPAKLVVLDSGNFEALVLAMPRPSLVKFQSPT*
Ga0184615_100546673	3300018059	Groundwater Sediment	MAAALVTGLLAAGCGGGGSSPVATTPSSSGAGDPAKLVVLDSGNFEALALSVSRPSLVKFQSPT
Ga0210377_100112872	3300021090	Groundwater Sediment	VRRMAAALVAGLLAAGCGGGGSSPAATTPPSSGGDDPAKLVVLDSGNFEALVLAMPRPSLVKFQSPT
Ga0210377_105656621	3300021090	Groundwater Sediment	VRRQAAVLLAGLLAAGCGGGGSSPAAPTPSPSVGAGDPTKLVVLDSSNFEALALAVSRPSLVKFQSPT
Ga0209286_10476432	3300027713	Freshwater Sediment	VKRRARAVLVASLLAGGCDGGSSSPTTPPSGGDETSKLVVLDSGNFDARVLAAPQPSLVKFQSPT
Ga0209797_100459942	3300027831	Wetland Sediment	VRRMAAALVAGLLAAGCGGGGSSPVATTSPSAGGGDPAKLVVLDSSNFEELALAVARPSLVKFQSPT
Ga0209797_101607421	3300027831	Wetland Sediment	LVAAGCGGGGSSPASTTPPLSGGGDPAKLVVLDSGNFDGLVLAAPRPSLVKFQSPT
Ga0209262_105316022	3300027841	Freshwater	MAAALVAVLLAAGCGGGGSSPAAATPPSSGGGDPAKLVVLDSGNFETLALSVSRPSLVKFQSPT
Ga0209293_100807023	3300027877	Wetland	VSRRAATALVAALLAMACGGGGRSSPPTSATPPASGGDASKLVVLESTTFDALVLAAPRPSLVKFQSPT
Ga0208980_103685762	3300027887	Wetland	MMAVAGLMAAACGGGGGSSSPTTPPASVPSTSAPSKLVVLDSGNFDSLVLAAPRPSLVKFQSPT
Ga0209496_100161702	3300027890	Wetland	VRRGATALMAALLAVACGGGGGSSPTTPSTPASSPGSPSKLVVLDSGSFDALVLAGPRPSLVKFQSPT
Ga0209253_100110139	3300027900	Freshwater Lake Sediment	MAVALVVGLLAAGCGGGGSSPAAATPASSGGGDPAKLVVLDSGNFEALALAASRPSLVKFQSPT
Ga0299915_102369562	3300030613	Soil	LTRSVWMAVLAAALLAGGCGGGSRPTATATPAPGRSDPTKLVVLDSGNFDALVLSVPRPSLVKFQSPT
Ga0315290_107165692	3300031834	Sediment	MAAALVAVLLSAGCGGGGSSPVATTPPSSGGGDPAKLVVLDSGNFEALALALSRPSLVKFQSPT
Ga0315278_100472253	3300031997	Sediment	MAAARVAVLLAAGCGGGGSSPATTTPPSSGGGDPAKLVVLDSGNFETLALSVSRPSLVKFQSPT
Ga0315278_111145702	3300031997	Sediment	VRRMAAALVAVLLAAGCGGGGSSPAAATPPSSGGGDPAKLVVLDSGNFETLALSVSRPS
Ga0315292_103023422	3300032143	Sediment	MAAALVAVLLSAGCGGGGSSPVATTPPPSSGGGDPAKLVVLDSGNFEALALALSRPSLVKFQSPT
Ga0315281_122588942	3300032163	Sediment	MAAALVAVLLSAACGGGGSSPVATTPPSSGGGDPAKLIVLDSGNFEALALALSRPSLVKFQSPT
Ga0315283_103062853	3300032164	Sediment	MASALVAGLLAAGCGGGGSSPVASTPSSSGGGDPAKLVVLDSGNFDALALAVSRPSLVKFQSPT
Ga0315283_111997491	3300032164	Sediment	VRRMAAALVAVLLSAGCGGGGSSPVATTPPSSGGGDPAKLVVLDSGNFEALALALSRPSLVKFQSP
Ga0315283_116368262	3300032164	Sediment	MAAALVAVLLATGCGGGGSSPAAATPPSSGGGDPAKLVVLDSGNFEALALSVSRPSLVKFQSPT
Ga0315268_122465101	3300032173	Sediment	VRRMAAALVAVLLSAGCGGGGSSPAATTPSSSGGGDPAKLVVLDSGNFDALALAVSRPSLVK
Ga0315270_107521172	3300032275	Sediment	MAAALGAVLLSAGCGGGGSSPAASSPPLSGGGDPAKLIVLDSGNFDALALAVSRPSLVKFQSPT
Ga0315286_104620272	3300032342	Sediment	MAAALVAVLLSAGCGGGGSSPAASSPPLSGGGDPAKLIVLDSGNFDALALAVSRPSLVKFQSPT
Ga0315287_102387793	3300032397	Sediment	VRRMAAARVAVLLAAGCGGGGSSPATTTPPSSGGGDPAKLVVLDSGNFETLALSVSRPSLVK
Ga0315287_106983072	3300032397	Sediment	MAAALVAVLLSAGCGGGGSSPAATTPSSSGGGDPAKLVVLDSGNFDALALAVSRPSLVKFQSPT
Ga0315287_121006252	3300032397	Sediment	MASALVAGLLAAGCGGGGSSPVASTPSSSGGGDPAKLVVLDSGNFDALALAVSRPSLVKFQSPI
Ga0315275_110570842	3300032401	Sediment	MAAALVAGLLAAGCGGGGSSPVASTPSSSGGGDPAKLIVLDSGNFDALALAVSRPSLVKFQSPT
Ga0315273_100513056	3300032516	Sediment	MTAALVAVLLAAGCGGGGSSPAATTPPSSGGGDPAKLVVLDSGNFEALALALPRPSLVKFQSPT
Ga0315273_110269183	3300032516	Sediment	MAAALVAVLLATGCGGGGSSPAAATPPSSGGGDPAKLVVLDSGNFETLALSVSRPSLVKFQSPT
Ga0315273_131845192	3300032516	Sediment	MAAALVAVLLSAGCGGGGSSPVAATPPPSGGGDPAKLVVLDSGNFEALALALSRPSLVKFQSPT
Ga0316605_118268313	3300033408	Soil	AGCGGGGPGPTASSTPPSSGGGDPAKLAVLDSGNFDALVLAAPRPSLVKFQSPT
Ga0316605_118861782	3300033408	Soil	VSRRATTVLVAALLAVACGGGGRSSPTTSASPPASSGDSSKLVVLDSTTFDALVLAAPRPSLVKFQSPT
Ga0316605_123014071	3300033408	Soil	AACGGGGGSSSPTTPAASGGSSPKLVVLDSGNFDSLVLAAPRPSLVKFQSPT
Ga0316603_112211492	3300033413	Soil	VKRMAATLVAGLLAAACGGGGSSPAAPTPPSAGGGDATKLVVLDSGNFEALALAPARPSL
Ga0316603_117573372	3300033413	Soil	VRHGAAAVMAGLLALGCSGGGSSSPTTPPVPGPSTSPGSKLVVLDSGNFDSLVLAAPRPSLVKFQSPT
Ga0316603_117801492	3300033413	Soil	MAVLAAASLLAGCGGGDFPPAAPSTPAASPSKAVVLDSGNFDAIVLAAPRPSLVEFQSPT
Ga0316619_101589162	3300033414	Soil	LAAATVAVLLAAGCGGGGTSSPTTPATPTPPVADATKLVVLDSSTFDALVLGMARPSLVKFQSPT
Ga0316619_106328302	3300033414	Soil	VKRMAATLVAGLLAAACGGGGSSPAAPTPPSAGGGDATKLVVLDSGNFEALALAPARPSLVKFQSPT
Ga0316619_108496792	3300033414	Soil	LRRGLAAATVVALLAAGCGGGGTSSPTASATPTPSAGDATKLLVLDSSNFDTLVLAAPRPSLVKFQSPT
Ga0316622_1001063913	3300033416	Soil	VRRWSAFLAVAALLAAGCGGGGTSSPTSPATPSGDSSKLVVLDSGNFDTLVLAAPRPSLVKFQSPT
Ga0316622_1001486071	3300033416	Soil	VKRMAATLVAGLLAAACGGGGSSPAAPTPPSAGGGDATKLVVLDSGNFEALALAPARPS
Ga0316622_1001918293	3300033416	Soil	MMVATGLLAAACGGGGGSSSPTTPAASGGSSPKLVVLDSGNFDSLVLAAPRPSLVKFQSP
Ga0316622_1005441023	3300033416	Soil	MALGAALLGVACGGGGSSSSTTPTAPTAPSGSTSTKLVVLDAGNFDAVVLAGPRPSLVKFQSPT
Ga0316622_1006093953	3300033416	Soil	VGRRVVTAAVVALLAAGCGGGGTSPTTPSTSPGGGDASKVVVLESGNFGALVLAPARPSLVEFMLPT
Ga0316622_1006588022	3300033416	Soil	VVLAALLVAGCGGGGSSPASSTPPSSGGGDPAKLVVLEQGNFDALVLAAPRPSLVKFQSP
Ga0316622_1020371821	3300033416	Soil	VRRRAATMVAAGLLAAACGGGGGSSSPTTPAASGGSSSKLVVLDSGNFDSLVLAAPRPSLVKFQSPT
Ga0316622_1021096032	3300033416	Soil	VRRRATVMAVAGLLAAACGGGGGSSTPTTPSAPGAGAPKLVVLDSGNFDPLVLAAPRPSL
Ga0316622_1022053081	3300033416	Soil	AFGQGGRDVSRRATSALVAALLAVACGGRSSPTTSTTPPAPGGDSSKLVVLDSTTFDALVLAAPRPSLVKFQSPT
Ga0316622_1024668133	3300033416	Soil	LLAGGCGGGSSSPTTPPSGGDDASKLVVLDSGNFDARVLAAPQPSLVKFQSPT
Ga0316622_1033362021	3300033416	Soil	VTGVRRRVLAAAVALLAAGCGGGGSSSPTTPAAPTPSGDATKLIVLDSNTFDALVLGVARPSLVKFQSPT
Ga0316625_1001669691	3300033418	Soil	VSRRATSALVAALLAVACGGRSSPTTSTTPPAPGGDSSKLVVLDSTTFDALVLAAPRPSLVKFQSPT
Ga0316601_1018662452	3300033419	Soil	MMVATGLLAAACGGGGGSSSPTTPAASGGSSSKLVVLDSGNFDSLVLAAPRPSLVKFQSP
Ga0316601_1023459543	3300033419	Soil	AGCGGGGTSSPTSPATPSPGGDSSKLVVLDSGNFDTLVLAAPRPSLVKFQSPT
Ga0326726_106703902	3300033433	Peat Soil	VALVAGLLAAGCGGGGSSPAAAPPPASGGDAAKLVVLDSGNFEALVMAVARPSLVKFQSP
Ga0326726_111439142	3300033433	Peat Soil	VRQRATTALVAALLAAACGGGGTSSPTTPSTPVSSSSKLVALDSGNFDTLVLAAPRPSLVKFQSPT
Ga0316626_107769012	3300033485	Soil	MVVAAGLLAAACGGGGGSSSPTAPPASGGSASKLVVLDSGNFDSLVLAAPRPSLVKFQSP
Ga0316626_110525481	3300033485	Soil	EAARRSSGVRRWSAFLAVAALLAAGCGGGGTSSPTSPATPSPGGDSSKLVVLDSGNFDTLVLAAPRPSLVKFQSPT
Ga0316626_110838801	3300033485	Soil	TSALVAALLAVACGGRSSPTTSTTPPAPGGDSSKLVVLDSTTFDALVLAAPRPSLVKFQSPT
Ga0316626_120304751	3300033485	Soil	MALGAALLGVACGGGGSSSSTTPTAPTAPSGSTPTKLVVLDAMTFDALVLVAPRPSLVKFQSPT
Ga0316624_106945722	3300033486	Soil	LAAATVVALLAAGCGGGGTSSPTASATPTPSAGDATKLLVLDSSNFDTLVLAAPRPSLVKFQSPT
Ga0299912_103697522	3300033489	Soil	LRRGLAAATVAVLLAAGCGGGGTSSPTTPATPTPPVADATKLVVLDSGNFDALVLGMARPSLVKFQSPT
Ga0316628_1001654243	3300033513	Soil	VRRRVLAAAVALLAAGCGGGGSSSPTTPAAPTPSGDATKLIVLDSNTFDALVLGVARPSLVKFQSPT
Ga0316616_1001119142	3300033521	Soil	VSRRATSALVAALLAVACGGRSSPTTSTTPPAPGGDSSKLAVLDSTTFDALVLAAPRPSLVKFQSPT
Ga0316616_1002872314	3300033521	Soil	CRGKEGSRVRRMAATLVAGLLAAACGGGGSSPAAPTPPSAGGGDATKLVVLDSGNFEALALAPARPSLVKFQSPT
Ga0316616_1015959032	3300033521	Soil	MMVATGLLAAACGGGGGSSSPTTPAASGGSSLKLVVLDSGNFDSLVLAAPRPSLVKFQSP
Ga0316617_1002988241	3300033557	Soil	SRLHGTLALRGHGGPGLRGGLAAATVAVLLAAGCGGGGTSSPTTPATPTPPAGDATKLVVLDSGNFDALVLGMARPSLVKFQSPT
Ga0373911_076060_2_163	3300034081	Sediment Slurry	LAAGCGGGGTSSPTSPATPSGDPSKLVVLDSGNFDTLVLAAPRPSLVKFQSPT
Ga0364925_0024012_88_282	3300034147	Sediment	MAAALVAGLLAAGCGGGGSSPAATTPPSSGEGDPAKLVVLDSGNFEGLVLAIPRPSLVKFQSPT
Ga0373909_0169236_352_552	3300034191	Sediment Slurry	MRCWSAFLAVAALLAAGCGGGGTSSPTSPATPSGDPSKLVVLDSGNFDTLVLAAPRPSLVKFQSPT
Ga0373905_040595_192_392	3300034414	Sediment Slurry	MRRWSAFLAVAALLAAGCGGGGTSSPTSPATPSGDPSKLVVLDSGNFDTLVLAAPRPSLVKFQSPT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084411

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences