Sample 3300027664

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300027664

3300027664: Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - BGW Initial Compost (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300027664 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0000103 \| Gp0054749 \| Ga0207873
Sample Name	Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - BGW Initial Compost (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	535314072
Sequencing Scaffolds	28
Novel Protein Genes	28
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	11
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium	2
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → PVC group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Comparative Metagneomics Of Mesophilic And Thermophilic Cellulose-Adapted Consortia
Type	Engineered
Taxonomy	Engineered → Solid Waste → Feedstock → Composting → Unclassified → Feedstock Adapted Compost → Comparative Metagneomics Of Mesophilic And Thermophilic Cellulose-Adapted Consortia

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Berkeley, CA
Coordinates	Lat. (^o)	37.86971	Long. (^o)	-122.31414	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003605	Metagenome / Metatranscriptome	477	Y
F004655	Metagenome / Metatranscriptome	429	Y
F005073	Metagenome / Metatranscriptome	413	Y
F006745	Metagenome	365	Y
F009995	Metagenome / Metatranscriptome	310	Y
F012882	Metagenome / Metatranscriptome	276	Y
F016569	Metagenome / Metatranscriptome	246	Y
F018909	Metagenome / Metatranscriptome	232	Y
F020718	Metagenome / Metatranscriptome	222	Y
F024195	Metagenome / Metatranscriptome	207	Y
F026607	Metagenome / Metatranscriptome	197	Y
F026704	Metagenome / Metatranscriptome	197	Y
F029294	Metagenome	189	Y
F031917	Metagenome / Metatranscriptome	181	Y
F036417	Metagenome / Metatranscriptome	170	Y
F049584	Metagenome / Metatranscriptome	146	Y
F074317	Metagenome / Metatranscriptome	119	Y
F088555	Metagenome	109	N
F098955	Metagenome / Metatranscriptome	103	Y
F101252	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207873_1000655	All Organisms → cellular organisms → Bacteria	36872	Open in IMG/M
Ga0207873_1001814	All Organisms → cellular organisms → Bacteria	19363	Open in IMG/M
Ga0207873_1001967	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus	18052	Open in IMG/M
Ga0207873_1001987	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus	17908	Open in IMG/M
Ga0207873_1006070	All Organisms → cellular organisms → Bacteria	7151	Open in IMG/M
Ga0207873_1009257	All Organisms → cellular organisms → Bacteria	5115	Open in IMG/M
Ga0207873_1017619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium	3214	Open in IMG/M
Ga0207873_1022552	All Organisms → cellular organisms → Bacteria	2715	Open in IMG/M
Ga0207873_1026053	All Organisms → cellular organisms → Bacteria	2453	Open in IMG/M
Ga0207873_1036970	All Organisms → cellular organisms → Bacteria	1912	Open in IMG/M
Ga0207873_1046110	Not Available	1631	Open in IMG/M
Ga0207873_1049283	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1554	Open in IMG/M
Ga0207873_1061416	All Organisms → cellular organisms → Bacteria	1323	Open in IMG/M
Ga0207873_1062904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium	1300	Open in IMG/M
Ga0207873_1071423	Not Available	1186	Open in IMG/M
Ga0207873_1098290	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
Ga0207873_1102240	All Organisms → cellular organisms → Bacteria → PVC group	913	Open in IMG/M
Ga0207873_1106596	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	886	Open in IMG/M
Ga0207873_1111298	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	859	Open in IMG/M
Ga0207873_1129184	All Organisms → cellular organisms → Bacteria → Proteobacteria	773	Open in IMG/M
Ga0207873_1141639	Not Available	724	Open in IMG/M
Ga0207873_1156279	Not Available	675	Open in IMG/M
Ga0207873_1164396	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
Ga0207873_1166920	Not Available	645	Open in IMG/M
Ga0207873_1172858	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	629	Open in IMG/M
Ga0207873_1176778	Not Available	619	Open in IMG/M
Ga0207873_1191859	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
Ga0207873_1199068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	567	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207873_1000655	Ga0207873_100065519	F098955	MDPSAIPVFLAGPFPVLHSANVLEREAEVQLDVGLIIGGLPTILAATSFPLDETWERVEAALSSGDARLGVAGIPHQVESPLGELEIFPSAYIGLECANGERLILAHIRGLDPDQDPESYAREVIAALLNGQSPAELGELIED
Ga0207873_1001814	Ga0207873_10018147	F098955	MDSSAIPVFLAGPFPVLHTFRVQEIEQEVELDVALLISGIPTMLAATRFPLDDTWERIQRALSSGDARLGVAGMPHETQSITGTPEIFPSAYVGLECANGERLVLAHIKGSNREQESEAYARSVISAILEGKTPAELGEPIED
Ga0207873_1001967	Ga0207873_100196716	F024195	VSGDKIFNVLGAIVTVALVTTVVSRPTSAQVIKAMGDAFSGSIRAALGK
Ga0207873_1001987	Ga0207873_100198720	F024195	MGDKVFNVLGAIVTVALVTTIVSRPTSAQVIKSMGDAFAGSIRAALGK
Ga0207873_1006070	Ga0207873_10060703	F036417	MVYPARVPLRKRIPTVLVRLATDDGEVVFRARWNRSPLELQRNILFRLRRGAPLWFEDEWGHGLCFRPECVWAAMVDGR
Ga0207873_1009257	Ga0207873_10092574	F020718	MHESEIIPLRGEAVTLWRLARDREQLHCFLVEPPFGFWLGVERAGELVFSQTYHELDTALQQAEGLKSPLLVAGWTEVEDH
Ga0207873_1017619	Ga0207873_10176193	F018909	MRWVKTAIGAVIAISVIPVIAETVMKLTGTGGALEGTVAATLLELSPLVFVAGVLAYLFTATGTRSRD
Ga0207873_1022552	Ga0207873_10225521	F012882	ETSYFKAPDAVWVKLVIPTAPKGVGRDEFGPLESQTSIVVRR
Ga0207873_1026053	Ga0207873_10260532	F101252	MHGLDALLSDLEWRRLRRRVSRHPAEAMFLNCWTWLRIMVLRSISR
Ga0207873_1036970	Ga0207873_10369702	F098955	MDSSAIPVFLAGPFPVIYTYRVREAEREVELDVALLISGMPTMLAATRFPLDDTWERIRAALDSGDARLGVAGVPHEAESLFGTPEIFPSAYVGLECANGERLVLAHIRGSDREQQSESYARSVIAAILQGHTPADLGEPIDA
Ga0207873_1046110	Ga0207873_10461102	F026607	MLKRFVSTTLAVAFALSASVALAGTYVTGPLPPEFGGGFIPPDPAVLKNVQKASKEGAKLAASVEKCYAKGAANFSKGKATGVDTCLNDPSKGVLPKYIAKVEKIASKAPGLPPCAGVPGSSGALIASLVQGFNSLVYCQSPSGAFVDGTATF
Ga0207873_1049283	Ga0207873_10492832	F016569	EMSRIYWKNVHNRAGEYFYTAMCGYHFSKSDDGTYSATTPNMVMGVNDKTDRAALGGRYSSQFLERNFDPQYFSLRSLSRLSD
Ga0207873_1061416	Ga0207873_10614162	F098955	MDPSAIPVFLAGPFPVLHSANVLDREAEVQLDVGLIIGGLPTILAATSFPLDETWERVEAALSSGDARLGVAGIPHQVESEIGETEVFPSAYVGLECANGERLILAHIRGPDRKQDPEAYAREVIAALLNGQTPA
Ga0207873_1062904	Ga0207873_10629043	F018909	MRWVKTAIGAVIAISVIPIIAQTVADLTGAGGALEGTVAATLLDLAPLVFVAGVLAYLFTATGDRRRN
Ga0207873_1071423	Ga0207873_10714231	F012882	ETSYFKAPDAVWVKLVIPTAPKGVGRDEFGPLDSQTSIVVRR
Ga0207873_1098290	Ga0207873_10982902	F088555	MAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNADADVQIHYALDQNGQPGTYQTNLQLPDGDYQTPVPVWVKVTFAPTTEPTLRTDLRHHLQWLEAIAG
Ga0207873_1102240	Ga0207873_11022401	F029294	MKQETGETRDAIVEADEKRIQKILDANNHRKDPYWIVIFAKPAKGCVDGKPTLIKHIKPYAVKPAPQVGMIIGEVNNQKGEILWDVNMPQIPFDFDALRALGAEEANDVVVETTSIPGAYLTR
Ga0207873_1106596	Ga0207873_11065963	F049584	MHQIGIVGLSYRHASTDEVARFSIPKADVPARLPELREALGVSELIYL
Ga0207873_1111298	Ga0207873_11112981	F004655	MSQLQILSPVALGPSDVRTLNAPLATLAGKRLGIRRDHTWRSFEVFADKLAELARERLGVADVVMFDPESRIGTPERESARVAEFAREVDAAVVGLGT
Ga0207873_1129184	Ga0207873_11291842	F005073	MTPGTLYLVLLLALFVAGIASLFYFGWLRRREKPPPGVKPLPRDDDWD
Ga0207873_1141639	Ga0207873_11416392	F006745	VTTRSGRTFERGRRTSSAVLIYVIVLVALQVFLITVAAEALLDDDEALAWATAINSVVLAGAAAAFLRYLRP
Ga0207873_1156279	Ga0207873_11562792	F088555	MALRMYFDETVSSLVRDDISPTLGSPDTYEGPGAGGTVERKLYIYSDNFQRTYSQVQLTSLNADAQVQLHYALDNNGSPGTWQTRVDLPDGDYRTPYPIWVRVTFAPTDEPTLRTDLRHWLQWLEAIAG
Ga0207873_1164396	Ga0207873_11643962	F026704	MPSWGYDVDENAIRFSNYFHVLRELVHLHAGWLALEPDFERKYALGDHLHDDARSLSKIKRRLYELRHPSDYPGAPGERLRALLDELAAQDSPGDYRDFAYGVVKPTLAAALRIHLRELDPVVDEPSLR
Ga0207873_1166920	Ga0207873_11669201	F009995	MVKVCDCFPQLKEITEAREQRYRANPDKPAPEGPQSTVEVKVTSIGHLNELVECKNSGHKFIIS
Ga0207873_1172858	Ga0207873_11728582	F003605	MAVGDAARDAGYPLVPETGEDGRVRWGAREINRARDFIAQVKALIPTGKAGYRSAAGISSGTANPSGGADGDIYFKIIT
Ga0207873_1176778	Ga0207873_11767781	F018909	MKWVKTAIGAVIAISVIPIIAETVMTLTGAGGALEGTVAATLLDLAPLVFVAGVLAYLFTATGTRGRD
Ga0207873_1191859	Ga0207873_11918591	F074317	MAFPVRTCALIGKFADPRVAESVAALLPHLQARQVRVLVSED
Ga0207873_1199068	Ga0207873_11990682	F031917	MSDGVADLKLAHLVELSKLGPRCRELEQEIATWLREHDVVFAGRTIPFVLMPHFISPAQQRAIRRAVGCLSAVLDRL

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